Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001559

Physical Location & Seq

Genomic Coordinates Reverse (-)

26531399 .. 26533460

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G70400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGACATGACAGAATTAAATACCCTTACCTACGATGATCTCGATAGTGTTTCAAAGCTACAAAAAAGTCGGAGATATGCTGATATAATGCAGCAAGTGGAAGAGGCTCTTGAAGGATCTGTATTAGAGTACAAGAAGCTAATCGTGGACTGCAAGCAGCTCTTAGTTGATATTGAGAATGAAATAGTCATCGTCCAAAACTTTATCCGTGACAAGTATAGAGTTAAGTTTCAAGAGCTTGAGTTGCTTGTTCCTCACCCAATCGATTATGCTCGTGTTGTGAAAAGAATTGGCAATGAGATGGATTTAAAACTTGTTGATCTTGAAGGCCTTCTTCCATCTGCTATGATCATGGTTCTTTTAGTTACTGCTTTAACCACAAAAGGGAACCAACTGCCAGAGGATGTTCTGCTAAAGACGATAGACGCTTGTGATCGGGCTCTGGATCTTGATTCCGCAAGGAAGAAGGTCCTTGAATTTGTTGATTGTTGCATTGTGTGTGTCACATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005687 GO:0005690 GO:0006139 GO:0006259 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009628 GO:0009791 GO:0009845 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015030 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0016569 GO:0016604 GO:0019219 GO:0019222 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070417 GO:0071011 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090351 GO:0097525 GO:0097526 GO:0120114 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Nop Prp31_C

Protein Analysis

170

Amino Acids

19.47

Weight (kDa)

4.68

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop	PF01798	54 - 163	9.8e-23	snoRNA binding domain, fibrillarin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60170 AT1G70400 AT1G70400 AT1G70400
fragaria_vesca	FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710
malus_domestica	MD02G1186000.v1.1 MD15G1297200.v1.1 MD15G1297400.v1.1
prunus_persica	Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.6G220500_v2.0.a1 Prupe.6G220500_v2.0.a1
pyrus_communis	pycom02g15100
rosa_chinensis	RchiOBHm_Chr1g0315331 RchiOBHm_Chr2g0108041 RchiOBHm_Chr2g0132891 RchiOBHm_Chr2g0140521 RchiOBHm_Chr2g0166471 RchiOBHm_Chr7g0232501
rosa_laevigata	RLG00000017635 RLG00000027115
rosa_multiflora	Rmu_sc0001484.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053870 Rroxscaffold_1G00053900 Rroxscaffold_2G00135680 Rroxscaffold_2G00144490
rosa_rugosa	Rorug02G0149800 Rorug02G0633300 Rorug03G0334600 Rorug05G0127600
rosa_samantha	Rh1AG025700 Rh1BG171200 Rh2AG199000 Rh2BG211800 Rh2CG203600 Rh2CG295600 Rh2CG572100 Rh2DG206600 Rh2DG576900 Rh4DG178400
rosa_wichuraiana	Rw2G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	2 cut(s)	124, 453
AcsI	RAATTY	1 cut(s)	476
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	5 cut(s)	54, 113, 233, 326, 476
AluBI	AGCT	4 cut(s)	58, 139, 160, 238
AluI	AGCT	4 cut(s)	58, 139, 160, 238
AlwI	GGATC	2 cut(s)	124, 453
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	2 cut(s)	91, 157
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	469
BanII	GRGCYC	1 cut(s)	442
BauI	CACGAG	1 cut(s)	273
BbvI	GCAGC	2 cut(s)	103, 169
BccI	CCATC	2 cut(s)	295, 346
BclI	TGATCA	1 cut(s)	348
BisI	GCNGC	2 cut(s)	92, 158
BlsI	GCNGC	2 cut(s)	93, 159
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	301
BseCI	ATCGAT	1 cut(s)	264
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	103, 169
BshFI	GGCC	1 cut(s)	330
BshVI	ATCGAT	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	384
BsnI	GGCC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	442
Bsp143I	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
BspACI	CCGC	1 cut(s)	456
BspANI	GGCC	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	124, 453
BsrDI	GCAATG	1 cut(s)	301
BssMI	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
BssSI	CACGAG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	6 cut(s)	40, 119, 322, 351, 436, 448
BstMBI	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstV1I	GCAGC	2 cut(s)	103, 169
BstX2I	RGATCY	2 cut(s)	116, 445
BstYI	RGATCY	2 cut(s)	116, 445
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	7, 352
CviJI	RGCY	7 cut(s)	58, 107, 139, 160, 238, 330, 440
CviKI_1	RGCY	7 cut(s)	58, 107, 139, 160, 238, 330, 440
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	1 cut(s)	163
DpnI	GATC	6 cut(s)	39, 118, 321, 350, 435, 447
DpnII	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
DraI	TTTAAA	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	469
EcoT38I	GRGCYC	1 cut(s)	442
FaeI	CATG	2 cut(s)	10, 355
FaiI	YATR	7 cut(s)	8, 78, 86, 219, 270, 347, 353
FalI	AAGNNNNNCTT	6 cut(s)	93, 125, 146, 178, 318, 350
FatI	CATG	2 cut(s)	6, 351
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	92, 158
FokI	GGATG	1 cut(s)	416
FriOI	GRGCYC	1 cut(s)	442
Fsp4HI	GCNGC	2 cut(s)	92, 158
GluI	GCNGC	2 cut(s)	92, 158
HaeIII	GGCC	1 cut(s)	330
HgaI	GACGC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	10, 355
HinfI	GANTC	1 cut(s)	452
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	6 cut(s)	41, 110, 233, 323, 443, 449
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	4 cut(s)	107, 320, 341, 460
HpyCH4V	TGCA	3 cut(s)	91, 153, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	10, 355
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
LpnPI	CCDG	2 cut(s)	411, 428
Lsp1109I	GCAGC	2 cut(s)	103, 169
MaeIII	GTNAC	3 cut(s)	209, 364, 502
MalI	GATC	6 cut(s)	39, 118, 321, 350, 435, 447
MboI	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
MboII	GAAGA	3 cut(s)	113, 326, 475
MflI	RGATCY	2 cut(s)	116, 445
MhlI	GDGCHC	1 cut(s)	442
MluCI	AATT	3 cut(s)	14, 288, 476
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	3 cut(s)	97, 264, 394
MroXI	GAANNNNTTC	1 cut(s)	330
MseI	TTAA	4 cut(s)	17, 225, 308, 374
MwoI	GCNNNNNNNGC	1 cut(s)	244
NdeII	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
NlaIII	CATG	2 cut(s)	10, 355
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	2 cut(s)	209, 502
PceI	AGGCCT	1 cut(s)	330
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	93, 159
PpuMI	RGGWCCY	1 cut(s)	469
Psp5II	RGGWCCY	1 cut(s)	469
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	469
PspPPI	RGGWCCY	1 cut(s)	469
PsuI	RGATCY	2 cut(s)	116, 445
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SaqAI	TTAA	4 cut(s)	17, 225, 308, 374
SatI	GCNGC	2 cut(s)	92, 158
Sau3AI	GATC	6 cut(s)	37, 116, 319, 348, 433, 445
Sau96I	GGNCC	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	442
SetI	ASST	6 cut(s)	32, 60, 141, 162, 240, 471
SinI	GGWCC	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	14, 288, 476
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	1 cut(s)	456
StuI	AGGCCT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	42, 264
TasI	AATT	3 cut(s)	14, 288, 476
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	4 cut(s)	17, 225, 308, 374
Tru9I	TTAA	4 cut(s)	17, 225, 308, 374
TseFI	GTSAC	2 cut(s)	209, 502
TseI	GCWGC	2 cut(s)	91, 157
Tsp45I	GTSAC	2 cut(s)	209, 502
TspDTI	ATGAA	1 cut(s)	195
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.