Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001559

Physical Location & Seq

Genomic Coordinates Forward (+)

28025937 .. 28027101

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1297400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGAGGCTGCTCCCAAGTCTCGAACCCGAGACCTACCGCTCATGGGCGAAGAAAAGGTATGCGATAACGGACATGAGGAAACTGGCAAATAGGATACAATTTGGTATACCAGAAGAGAGTTCCTTAGGGGATGGACTGGGTGAAGGTCATGGAATGCTTGGTCAGGCTGGGAGCGGCAAGCTGCGTGTATCAATGGGTCAGAGCAAACTTGCCGCAAAAGTTGCTAAGAAGTTCAAGGAAAAGCTTTACGGAAGCAGTGGTGCTACATCGGGACTAATTTCAAGTTTAGCGTGTACGCCTGTGCAGGGGATTGAGCTCTCGAATCCACAGGCTCATGCACACCAGCTTGGCGGTGGAGCTCAAAGCGCCTACTTCTCTGAGACGGGAACATTTTCAAGAACTGGGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Nop Prp31_C

Protein Analysis

139

Amino Acids

14.69

Weight (kDa)

9.76

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prp31_C	PF09785	17 - 110	7.9e-25	Prp31 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60170 AT1G70400 AT1G70400 AT1G70400
fragaria_vesca	FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710
malus_domestica	MD02G1186000.v1.1 MD15G1297200.v1.1 MD15G1297400.v1.1
prunus_persica	Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.6G220500_v2.0.a1 Prupe.6G220500_v2.0.a1
pyrus_communis	pycom02g15100
rosa_chinensis	RchiOBHm_Chr1g0315331 RchiOBHm_Chr2g0108041 RchiOBHm_Chr2g0132891 RchiOBHm_Chr2g0140521 RchiOBHm_Chr2g0166471 RchiOBHm_Chr7g0232501
rosa_laevigata	RLG00000017635 RLG00000027115
rosa_multiflora	Rmu_sc0001484.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053870 Rroxscaffold_1G00053900 Rroxscaffold_2G00135680 Rroxscaffold_2G00144490
rosa_rugosa	Rorug02G0149800 Rorug02G0633300 Rorug03G0334600 Rorug05G0127600
rosa_samantha	Rh1AG025700 Rh1BG171200 Rh2AG199000 Rh2BG211800 Rh2CG203600 Rh2CG295600 Rh2CG572100 Rh2DG206600 Rh2DG576900 Rh4DG178400
rosa_wichuraiana	Rw2G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	42, 177
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	4 cut(s)	40, 177, 216, 354
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	46, 308
AgsI	TTSAA	3 cut(s)	238, 285, 399
AluBI	AGCT	5 cut(s)	184, 247, 319, 349, 362
AluI	AGCT	5 cut(s)	184, 247, 319, 349, 362
Alw21I	GWGCWC	2 cut(s)	321, 364
Alw26I	GTCTC	3 cut(s)	26, 26, 377
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	10, 184
Asp700I	GAANNNNTTC	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	127
BanII	GRGCYC	2 cut(s)	321, 364
Bbv12I	GWGCWC	2 cut(s)	321, 364
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	90
BcoDI	GTCTC	3 cut(s)	26, 26, 377
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	4 cut(s)	11, 178, 185, 216
BlsI	GCNGC	4 cut(s)	12, 179, 186, 217
BmeT110I	CYCGRG	1 cut(s)	29
BmrI	ACTGGG	2 cut(s)	149, 414
BmuI	ACTGGG	2 cut(s)	149, 414
BsaI	GGTCTC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 308
Bse1I	ACTGG	3 cut(s)	90, 144, 409
Bse21I	CCTNAGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	46, 308
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	3 cut(s)	90, 144, 409
BseXI	GCAGC	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	326
BsiHKAI	GWGCWC	2 cut(s)	321, 364
BsiHKCI	CYCGRG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	46, 308
BsmAI	GTCTC	3 cut(s)	26, 26, 377
BsmBI	CGTCTC	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	288
BsmI	GAATGC	1 cut(s)	162
Bso31I	GGTCTC	1 cut(s)	26
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	321, 364
Bsp143I	GATC	1 cut(s)	411
BspACI	CCGC	4 cut(s)	40, 177, 216, 354
BspCNI	CTCAG	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	26
BsrBI	CCGCTC	2 cut(s)	42, 177
BsrI	ACTGG	3 cut(s)	90, 144, 409
BssMI	GATC	1 cut(s)	411
BssNAI	GTATAC	1 cut(s)	110
Bst1107I	GTATAC	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	127, 228, 381
BstF5I	GGATG	1 cut(s)	139
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	3 cut(s)	26, 26, 377
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 368
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	411
BstYI	RGATCY	1 cut(s)	411
BstZ17I	GTATAC	1 cut(s)	110
Bsu36I	CCTNAGG	1 cut(s)	127
BsuI	GTATCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	139
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	182
CfoI	GCGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	4 cut(s)	45, 76, 152, 338
CviJI	RGCY	8 cut(s)	10, 170, 184, 247, 319, 335, 349, 362
CviKI_1	RGCY	8 cut(s)	10, 170, 184, 247, 319, 335, 349, 362
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	3 cut(s)	127, 228, 381
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Ecl136II	GAGCTC	2 cut(s)	319, 362
Eco24I	GRGCYC	2 cut(s)	321, 364
Eco31I	GGTCTC	1 cut(s)	26
Eco53kI	GAGCTC	2 cut(s)	319, 362
Eco81I	CCTNAGG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	29
EcoICRI	GAGCTC	2 cut(s)	319, 362
EcoT38I	GRGCYC	2 cut(s)	321, 364
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	4 cut(s)	48, 79, 155, 341
FaiI	YATR	6 cut(s)	46, 63, 77, 110, 153, 339
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	4 cut(s)	44, 75, 151, 337
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	11, 178, 185, 216
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	2 cut(s)	321, 364
Fsp4HI	GCNGC	4 cut(s)	11, 178, 185, 216
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	4 cut(s)	11, 178, 185, 216
GsaI	CCCAGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	372
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	4 cut(s)	48, 79, 155, 341
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	110, 297
Hpy188I	TCNGA	3 cut(s)	204, 382, 416
Hpy188III	TCNNGA	4 cut(s)	23, 273, 322, 399
Hpy8I	GTNNAC	2 cut(s)	110, 297
HpyAV	CCTTC	1 cut(s)	140
HpyCH4V	TGCA	2 cut(s)	307, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 368
HpyF3I	CTNAG	3 cut(s)	127, 228, 381
Hsp92II	CATG	4 cut(s)	48, 79, 155, 341
HspAI	GCGC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	3 cut(s)	18, 174, 359
Lsp1109I	GCAGC	1 cut(s)	171
MalI	GATC	1 cut(s)	413
MbiI	CCGCTC	2 cut(s)	42, 177
MboI	GATC	1 cut(s)	411
MboII	GAAGA	2 cut(s)	64, 128
MflI	RGATCY	1 cut(s)	411
MhlI	GDGCHC	2 cut(s)	321, 364
MluCI	AATT	2 cut(s)	101, 279
MnlI	CCTC	2 cut(s)	72, 402
MroXI	GAANNNNTTC	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	224, 368
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	4 cut(s)	48, 79, 155, 341
PctI	GAATGC	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	12, 179, 186, 217
Psp124BI	GAGCTC	2 cut(s)	321, 364
PspFI	CCCAGC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	411
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SacI	GAGCTC	2 cut(s)	321, 364
SatI	GCNGC	4 cut(s)	11, 178, 185, 216
Sau3AI	GATC	1 cut(s)	411
SduI	GDGCHC	2 cut(s)	321, 364
SetI	ASST	8 cut(s)	38, 62, 151, 186, 249, 321, 351, 364
Sse9I	AATT	2 cut(s)	101, 279
SsiI	CCGC	4 cut(s)	40, 177, 216, 354
SstI	GAGCTC	2 cut(s)	321, 364
TaqI	TCGA	2 cut(s)	24, 323
TasI	AATT	2 cut(s)	101, 279
TauI	GCSGC	2 cut(s)	180, 218
TfiI	GAWTC	1 cut(s)	325
TscAI	CASTG	1 cut(s)	265
TseI	GCWGC	2 cut(s)	10, 184
TspGWI	ACGGA	2 cut(s)	86, 267
TspRI	CASTG	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	109
XmnI	GAANNNNTTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.