Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001559

Physical Location & Seq

Genomic Coordinates Reverse (-)

75148396 .. 75152593

Gene Structure 4198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00053900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGATGCAAACTCCATTTTGCCCCTGCGTGTTGTTTCTTGCTTCGACACCTACGTTGCTTCTCAGTGCTATCGTGTCTTTGCTACTTCACTCCACAGAGAGGTGGATAGTGAAGGAAGTGGTGCTGGGAATTGCGCATCCGCTCTTTTACTCGCATCTGAGGACTTTTGGCAATATCAGCTGCAATCGATTTGCGGGACCACCATCAGCTTTGATGATGCTGCACTTGCACAAATTCCTCAAGCAACCATCACAAGTTGGCACAATCCAGCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

9.96

Weight (kDa)

4.3

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60170 AT1G70400 AT1G70400 AT1G70400
fragaria_vesca	FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710
malus_domestica	MD02G1186000.v1.1 MD15G1297200.v1.1 MD15G1297400.v1.1
prunus_persica	Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.6G220500_v2.0.a1 Prupe.6G220500_v2.0.a1
pyrus_communis	pycom02g15100
rosa_chinensis	RchiOBHm_Chr1g0315331 RchiOBHm_Chr2g0108041 RchiOBHm_Chr2g0132891 RchiOBHm_Chr2g0140521 RchiOBHm_Chr2g0166471 RchiOBHm_Chr7g0232501
rosa_laevigata	RLG00000017635 RLG00000027115
rosa_multiflora	Rmu_sc0001484.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053870 Rroxscaffold_1G00053900 Rroxscaffold_2G00135680 Rroxscaffold_2G00144490
rosa_rugosa	Rorug02G0149800 Rorug02G0633300 Rorug03G0334600 Rorug05G0127600
rosa_samantha	Rh1AG025700 Rh1BG171200 Rh2AG199000 Rh2BG211800 Rh2CG203600 Rh2CG295600 Rh2CG572100 Rh2DG206600 Rh2DG576900 Rh4DG178400
rosa_wichuraiana	Rw2G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	136
AccBSI	CCGCTC	1 cut(s)	143
AciI	CCGC	2 cut(s)	141, 195
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	100
AluBI	AGCT	2 cut(s)	181, 210
AluI	AGCT	2 cut(s)	181, 210
ApeKI	GCWGC	2 cut(s)	181, 221
ApoI	RAATTY	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	168, 208
BccI	CCATC	2 cut(s)	212, 257
BisI	GCNGC	2 cut(s)	182, 222
BlsI	GCNGC	2 cut(s)	183, 223
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	199
BmsI	GCATC	3 cut(s)	146, 164, 208
BpuEI	CTTGAG	1 cut(s)	225
Bsa29I	ATCGAT	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	188
BseGI	GGATG	2 cut(s)	10, 137
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	77, 150
BseXI	GCAGC	2 cut(s)	168, 208
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	211
BspACI	CCGC	2 cut(s)	141, 195
BspCNI	CTCAG	2 cut(s)	76, 151
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	199
BsrBI	CCGCTC	1 cut(s)	143
BstDEI	CTNAG	2 cut(s)	63, 159
BstF5I	GGATG	2 cut(s)	10, 137
BstHHI	GCGC	1 cut(s)	137
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 227
BstV1I	GCAGC	2 cut(s)	168, 208
Bsu15I	ATCGAT	1 cut(s)	188
BsuTUI	ATCGAT	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	10, 137
BtsIMutI	CAGTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	188
CviJI	RGCY	2 cut(s)	181, 210
CviKI_1	RGCY	2 cut(s)	181, 210
DdeI	CTNAG	2 cut(s)	63, 159
Eco47I	GGWCC	1 cut(s)	198
FaqI	GGGAC	1 cut(s)	211
FauI	CCCGC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	182, 222
FokI	GGATG	2 cut(s)	17, 124
Fsp4HI	GCNGC	2 cut(s)	182, 222
FspI	TGCGCA	1 cut(s)	136
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	2 cut(s)	182, 222
GsaI	CCCAGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	8, 184, 224, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 227
HpyF3I	CTNAG	2 cut(s)	63, 159
HpySE526I	ACGT	1 cut(s)	54
HspAI	GCGC	1 cut(s)	135
LpnPI	CCDG	2 cut(s)	38, 111
Lsp1109I	GCAGC	2 cut(s)	168, 208
LweI	GCATC	3 cut(s)	146, 164, 208
MaeII	ACGT	1 cut(s)	54
MbiI	CCGCTC	1 cut(s)	143
MluCI	AATT	3 cut(s)	130, 234, 274
MnlI	CCTC	3 cut(s)	94, 154, 249
MseI	TTAA	1 cut(s)	277
MspA1I	CMGCKG	1 cut(s)	181
MwoI	GCNNNNNNNGC	2 cut(s)	178, 227
NlaIV	GGNNCC	1 cut(s)	199
NsbI	TGCGCA	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	183, 223
PspFI	CCCAGC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	277
SatI	GCNGC	2 cut(s)	182, 222
Sau96I	GGNCC	1 cut(s)	198
SetI	ASST	5 cut(s)	53, 57, 105, 183, 212
SfaNI	GCATC	3 cut(s)	146, 164, 208
SinI	GGWCC	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	240
SmoI	CTYRAG	1 cut(s)	240
Sse9I	AATT	3 cut(s)	130, 234, 274
SsiI	CCGC	2 cut(s)	141, 195
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	45, 188
TasI	AATT	3 cut(s)	130, 234, 274
Tru1I	TTAA	1 cut(s)	277
Tru9I	TTAA	1 cut(s)	277
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	2 cut(s)	181, 221
TspRI	CASTG	1 cut(s)	71
VpaK11BI	GGWCC	1 cut(s)	198
XapI	RAATTY	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.