Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001559

Physical Location & Seq

Genomic Coordinates Forward (+)

16897542 .. 16904416

Gene Structure 6875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1186000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGCGACACTTGCTGATTCATTTCTCGCAGACCTTGATGAACTATCTGACAATGAAGATGATATAATTGTTGAAGATGATGCTGATGCTGGAAATATGGAAGAAGATGTTGATGGGGACTTGGCTGATTTAGAAACACTTAATTACGATGATCTGGACAGTGTTTCAAAATTGCAGAAATCACAAAGATATACAGATATAATACAGAAAGTGGAAGGTGCATTGGAGAAGGGTTCTGATATGTCAAATCATGCAATAGTTTTGGAAGATGATCCGGAATACCAGCTGATTGTGGACTGTAATGCTTTGTCTGTTGACATTGAGAATGAAATTGTAATCATCCATAATTTTATTCGGGACAAGTATCGTCCAAAATTTCCGGAGCTGGAATCACTTGTGCATCATCCAATTGATTATGCTCGAGTTGTTAAGAAAATTGGAAATGAAATGGATGTTACCCTTGTTGATCTGGAGGGGCTTCTACCTTCAGCAATTATTATGGTTGTGTCAGTTACAGCATCAACTACAAGTGGCAAGCCGCTTCCAGAGGACGTCCTTGCGAAAATAGTTGAGGCATGCGATCGAGCCCTTGCTCTTGATTCAGCAAAGAAGATGGTGCTTGATTTTGTTGAAAGTAGAATGGGCTTTATTGCGCCAAATCTGTCTGCTATTGTTGGTAGTGCTGTTGCGGCAAAACTTATGGGGACGGCTGGGGGTCTCACATCCTTAGCTAAGATGCCAGCTTGTAATGTTCAGCTTCTTGGTGCTAAGAGAAAAAACCTTGCTGGGTTTTCCACTGCAACATCACACTTCCGCGTTGGTTATGTTGAGCAGACAGAAATATTTCAATCTACACCTCCTTCATTGAGGATGCGTGCTTGTCGGCTCTTGGCTGCAAAATCAACACTTGCAGCACGGGTGGATTCCACAAGAGGAGATCCATCTGGGAACACTGGAAGGGCATTCCGGGAAGAGATTCGTAAGAAAATTGAGAAATGGCAGGAGCCTCCTCCTGCAAAGCAACCTAAACCACTTCCAGTTCCTGATTCTGAACCTAAAAAGAAGAGAGGTGGTCGCCGACTAAGAAAGATGAAGGAAAGGTATGCGATAACGGACATGAGGAAACTGGCAAACAGGATGCAATTTGGTATACCAGAAGAGAGTTCGTTAGGGGATGGACTGGGTGAAGGGTATGGAATGCTTGGTCAGGCTGGGAGTGGCAAGCTGCGTGTATCAATGGGTCAGAGCAAACTTGCTGCAAAAGTTGCTAAGAAGTTCAAGGAAAAGAATTATGGAAGCAGTGGTGCTACATCTGGACTAACTTCAAGTTTGGCGTTTACGCCTGTGCAGGGTATTGAGCTTTCAAATCCACAGGCTCATGCGCAGCAGCTTGGCGGTGGAGCTCAAAGCACCTACTTCTCTGAGACGGGAACATTTTCAAAAATCAAGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Nop Prp31_C

Protein Analysis

486

Amino Acids

52.64

Weight (kDa)

5.75

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop	PF01798	104 - 332	6.6e-74	snoRNA binding domain, fibrillarin
Prp31_C	PF09785	339 - 457	2.5e-43	Prp31 C terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60170 AT1G70400 AT1G70400 AT1G70400
fragaria_vesca	FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710
malus_domestica	MD02G1186000.v1.1 MD15G1297200.v1.1 MD15G1297400.v1.1
prunus_persica	Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.6G220500_v2.0.a1 Prupe.6G220500_v2.0.a1
pyrus_communis	pycom02g15100
rosa_chinensis	RchiOBHm_Chr1g0315331 RchiOBHm_Chr2g0108041 RchiOBHm_Chr2g0132891 RchiOBHm_Chr2g0140521 RchiOBHm_Chr2g0166471 RchiOBHm_Chr7g0232501
rosa_laevigata	RLG00000017635 RLG00000027115
rosa_multiflora	Rmu_sc0001484.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053870 Rroxscaffold_1G00053900 Rroxscaffold_2G00135680 Rroxscaffold_2G00144490
rosa_rugosa	Rorug02G0149800 Rorug02G0633300 Rorug03G0334600 Rorug05G0127600
rosa_samantha	Rh1AG025700 Rh1BG171200 Rh2AG199000 Rh2BG211800 Rh2CG203600 Rh2CG295600 Rh2CG572100 Rh2DG206600 Rh2DG576900 Rh4DG178400
rosa_wichuraiana	Rw2G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	555
Acc16I	TGCGCA	1 cut(s)	1383
AccI	GTMKAC	1 cut(s)	1150
AccII	CGCG	1 cut(s)	816
AccIII	TCCGGA	2 cut(s)	274, 379
AciI	CCGC	4 cut(s)	539, 689, 814, 1395
AclWI	GGATC	2 cut(s)	266, 932
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	1349
AgsI	TTSAA	8 cut(s)	74, 168, 632, 848, 1279, 1326, 1365, 1440
AluBI	AGCT	9 cut(s)	286, 385, 731, 743, 757, 1225, 1360, 1390, 1403
AluI	AGCT	9 cut(s)	286, 385, 731, 743, 757, 1225, 1360, 1390, 1403
Alw21I	GWGCWC	1 cut(s)	1405
Alw26I	GTCTC	2 cut(s)	722, 1418
AlwI	GGATC	2 cut(s)	266, 932
AlwNI	CAGNNNCTG	1 cut(s)	1043
Ama87I	CYCGRG	1 cut(s)	420
Aor13HI	TCCGGA	2 cut(s)	274, 379
ApeKI	GCWGC	6 cut(s)	893, 911, 1225, 1256, 1384, 1387
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	3 cut(s)	843, 975, 1435
AspLEI	GCGC	2 cut(s)	655, 1384
AsuC2I	CCSGG	1 cut(s)	968
AsuHPI	GGTGA	1 cut(s)	1196
AvaI	CYCGRG	1 cut(s)	420
BanII	GRGCYC	2 cut(s)	589, 1405
Bbv12I	GWGCWC	1 cut(s)	1405
BbvI	GCAGC	6 cut(s)	880, 923, 1212, 1243, 1396, 1399
BccI	CCATC	4 cut(s)	107, 607, 949, 1169
BceAI	ACGGC	1 cut(s)	723
BcnI	CCSGG	1 cut(s)	968
BcoDI	GTCTC	2 cut(s)	722, 1418
BisI	GCNGC	8 cut(s)	539, 690, 894, 912, 1226, 1257, 1385, 1388
BlsI	GCNGC	8 cut(s)	540, 691, 895, 913, 1227, 1258, 1386, 1389
Bme1390I	CCNGG	1 cut(s)	968
BmeT110I	CYCGRG	1 cut(s)	420
BmiI	GGNNCC	1 cut(s)	1005
BmrFI	CCNGG	1 cut(s)	968
BmrI	ACTGGG	1 cut(s)	1190
BmsI	GCATC	7 cut(s)	70, 76, 409, 527, 726, 861, 1128
BmuI	ACTGGG	1 cut(s)	1190
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	968
BsaHI	GRCGYC	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	722
BsaWI	WCCGGW	2 cut(s)	274, 379
Bsc4I	CCNNNNNNNGG	1 cut(s)	1349
Bse1I	ACTGG	4 cut(s)	958, 1037, 1131, 1185
BseAI	TCCGGA	2 cut(s)	274, 379
BseGI	GGATG	7 cut(s)	339, 403, 457, 722, 876, 1143, 1180
BseLI	CCNNNNNNNGG	1 cut(s)	1349
BseMII	CTCAG	1 cut(s)	1413
BseNI	ACTGG	4 cut(s)	958, 1037, 1131, 1185
BseRI	GAGGAG	2 cut(s)	948, 999
BseXI	GCAGC	6 cut(s)	880, 923, 1212, 1243, 1396, 1399
BseYI	CCCAGC	3 cut(s)	710, 785, 1211
BsgI	GTGCAG	1 cut(s)	1367
Bsh1236I	CGCG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	583
BsiEI	CGRYCG	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	1405
BsiHKCI	CYCGRG	1 cut(s)	420
BsiSI	CCGG	3 cut(s)	275, 380, 967
BslFI	GGGAC	3 cut(s)	131, 371, 718
BslI	CCNNNNNNNGG	1 cut(s)	1349
BsmAI	GTCTC	2 cut(s)	722, 1418
BsmBI	CGTCTC	1 cut(s)	1418
BsmFI	GGGAC	3 cut(s)	131, 371, 718
BsmI	GAATGC	2 cut(s)	962, 1203
Bso31I	GGTCTC	1 cut(s)	722
BsoBI	CYCGRG	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	589, 1405
Bsp13I	TCCGGA	2 cut(s)	274, 379
Bsp143I	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
BspACI	CCGC	4 cut(s)	539, 689, 814, 1395
BspCNI	CTCAG	1 cut(s)	1414
BspEI	TCCGGA	2 cut(s)	274, 379
BspFNI	CGCG	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	1005
BspPI	GGATC	2 cut(s)	266, 932
BspTNI	GGTCTC	1 cut(s)	722
BsrI	ACTGG	4 cut(s)	958, 1037, 1131, 1185
BssMI	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
BssNAI	GTATAC	1 cut(s)	1151
BssNI	GRCGYC	1 cut(s)	552
Bst1107I	GTATAC	1 cut(s)	1151
Bst4CI	ACNGT	2 cut(s)	161, 299
Bst6I	CTCTTC	3 cut(s)	966, 1058, 1152
BstACI	GRCGYC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	1265
BstC8I	GCNNGC	5 cut(s)	536, 577, 741, 876, 1223
BstDEI	CTNAG	6 cut(s)	727, 732, 768, 1082, 1269, 1422
BstF5I	GGATG	7 cut(s)	339, 403, 457, 722, 876, 1143, 1180
BstFNI	CGCG	1 cut(s)	816
BstHHI	GCGC	2 cut(s)	655, 1384
BstKTI	GATC	6 cut(s)	154, 274, 469, 583, 940, 1455
BstMAI	GTCTC	2 cut(s)	722, 1418
BstMBI	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
BstMCI	CGRYCG	1 cut(s)	583
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 689, 1265
BstNSI	RCATGY	1 cut(s)	579
BstSCI	CCNGG	1 cut(s)	966
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	6 cut(s)	880, 923, 1212, 1243, 1396, 1399
BstX2I	RGATCY	2 cut(s)	937, 1452
BstYI	RGATCY	2 cut(s)	937, 1452
BstZ17I	GTATAC	1 cut(s)	1151
BtsCI	GGATG	7 cut(s)	339, 403, 457, 722, 876, 1143, 1180
BtsI	GCAGTG	2 cut(s)	795, 1306
BtsIMutI	CAGTG	4 cut(s)	166, 795, 951, 1306
Cac8I	GCNNGC	5 cut(s)	536, 577, 741, 876, 1223
CaiI	CAGNNNCTG	1 cut(s)	1043
CfoI	GCGC	2 cut(s)	655, 1384
CviAII	CATG	4 cut(s)	251, 576, 1117, 1379
DdeI	CTNAG	6 cut(s)	727, 732, 768, 1082, 1269, 1422
DpnI	GATC	6 cut(s)	153, 273, 468, 582, 939, 1454
DpnII	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
Eam1104I	CTCTTC	3 cut(s)	966, 1058, 1152
EarI	CTCTTC	3 cut(s)	966, 1058, 1152
Ecl136II	GAGCTC	1 cut(s)	1403
Eco24I	GRGCYC	2 cut(s)	589, 1405
Eco31I	GGTCTC	1 cut(s)	722
Eco53kI	GAGCTC	1 cut(s)	1403
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	1403
EcoT38I	GRGCYC	2 cut(s)	589, 1405
Esp3I	CGTCTC	1 cut(s)	1418
FaeI	CATG	4 cut(s)	254, 579, 1120, 1382
FaqI	GGGAC	3 cut(s)	131, 371, 718
FatI	CATG	4 cut(s)	250, 575, 1116, 1378
FblI	GTMKAC	1 cut(s)	1150
Fnu4HI	GCNGC	8 cut(s)	539, 690, 894, 912, 1226, 1257, 1385, 1388
FokI	GGATG	7 cut(s)	326, 390, 464, 709, 883, 1150, 1187
FriOI	GRGCYC	2 cut(s)	589, 1405
Fsp4HI	GCNGC	8 cut(s)	539, 690, 894, 912, 1226, 1257, 1385, 1388
FspI	TGCGCA	1 cut(s)	1383
GlaI	GCGC	2 cut(s)	654, 1383
GluI	GCNGC	8 cut(s)	539, 690, 894, 912, 1226, 1257, 1385, 1388
GsaI	CCCAGC	3 cut(s)	714, 789, 1215
GsuI	CTGGAG	1 cut(s)	491
HapII	CCGG	3 cut(s)	275, 380, 967
HhaI	GCGC	2 cut(s)	655, 1384
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	4 cut(s)	254, 579, 1120, 1382
Hin6I	GCGC	2 cut(s)	653, 1382
HinP1I	GCGC	2 cut(s)	653, 1382
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	6 cut(s)	17, 389, 599, 923, 976, 1046
HpaII	CCGG	3 cut(s)	275, 380, 967
HphI	GGTGA	1 cut(s)	1196
Hpy166II	GTNNAC	4 cut(s)	295, 316, 1151, 1338
Hpy188I	TCNGA	6 cut(s)	49, 238, 1051, 1245, 1423, 1457
Hpy8I	GTNNAC	4 cut(s)	295, 316, 1151, 1338
HpyAV	CCTTC	7 cut(s)	209, 223, 495, 870, 951, 1087, 1181
HpyCH4III	ACNGT	2 cut(s)	161, 299
HpyCH4IV	ACGT	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 689, 1265
HpyF3I	CTNAG	6 cut(s)	727, 732, 768, 1082, 1269, 1422
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	4 cut(s)	254, 579, 1120, 1382
HspAI	GCGC	2 cut(s)	653, 1382
Kpn2I	TCCGGA	2 cut(s)	274, 379
Kzo9I	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
LmnI	GCTCC	3 cut(s)	382, 1003, 1400
Lsp1109I	GCAGC	6 cut(s)	880, 923, 1212, 1243, 1396, 1399
LweI	GCATC	7 cut(s)	70, 76, 409, 527, 726, 861, 1128
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	454, 511
MalI	GATC	6 cut(s)	153, 273, 468, 582, 939, 1454
MboI	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
MboII	GAAGA	9 cut(s)	68, 86, 113, 116, 278, 622, 983, 1075, 1169
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	2 cut(s)	937, 1452
MhlI	GDGCHC	2 cut(s)	589, 1405
MroI	TCCGGA	2 cut(s)	274, 379
MroXI	GAANNNNTTC	3 cut(s)	843, 975, 1435
MseI	TTAA	2 cut(s)	141, 429
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	3 cut(s)	275, 380, 967
MspR9I	CCNGG	1 cut(s)	968
MunI	CAATTG	1 cut(s)	408
Mva1269I	GAATGC	2 cut(s)	962, 1203
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	3 cut(s)	11, 689, 1265
NciI	CCSGG	1 cut(s)	968
NdeII	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
NlaIII	CATG	4 cut(s)	254, 579, 1120, 1382
NlaIV	GGNNCC	1 cut(s)	1005
NsbI	TGCGCA	1 cut(s)	1383
NspI	RCATGY	1 cut(s)	579
PaeI	GCATGC	1 cut(s)	579
PaeR7I	CTCGAG	1 cut(s)	420
PctI	GAATGC	2 cut(s)	962, 1203
PdmI	GAANNNNTTC	3 cut(s)	843, 975, 1435
PfeI	GAWTC	6 cut(s)	17, 389, 599, 923, 976, 1046
PfoI	TCCNGGA	1 cut(s)	966
PkrI	GCNGC	8 cut(s)	540, 691, 895, 913, 1227, 1258, 1386, 1389
Ple19I	CGATCG	1 cut(s)	583
Psp124BI	GAGCTC	1 cut(s)	1405
PspFI	CCCAGC	3 cut(s)	710, 785, 1211
PspN4I	GGNNCC	1 cut(s)	1005
PspXI	VCTCGAGB	1 cut(s)	420
PstNI	CAGNNNCTG	1 cut(s)	1043
PsuI	RGATCY	2 cut(s)	937, 1452
PvuI	CGATCG	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	286
SacI	GAGCTC	1 cut(s)	1405
SaqAI	TTAA	2 cut(s)	141, 429
SatI	GCNGC	8 cut(s)	539, 690, 894, 912, 1226, 1257, 1385, 1388
Sau3AI	GATC	6 cut(s)	151, 271, 466, 580, 937, 1452
ScrFI	CCNGG	1 cut(s)	968
SduI	GDGCHC	2 cut(s)	589, 1405
SfaNI	GCATC	7 cut(s)	70, 76, 409, 527, 726, 861, 1128
Sfr274I	CTCGAG	1 cut(s)	420
SlaI	CTCGAG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	420
SmoI	CTYRAG	1 cut(s)	420
SphI	GCATGC	1 cut(s)	579
SsiI	CCGC	4 cut(s)	539, 689, 814, 1395
SspI	AATATT	1 cut(s)	843
SstI	GAGCTC	1 cut(s)	1405
StyD4I	CCNGG	1 cut(s)	966
TaaI	ACNGT	2 cut(s)	161, 299
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	421, 583
TauI	GCSGC	2 cut(s)	541, 692
TfiI	GAWTC	6 cut(s)	17, 389, 599, 923, 976, 1046
Tru1I	TTAA	2 cut(s)	141, 429
Tru9I	TTAA	2 cut(s)	141, 429
TscAI	CASTG	4 cut(s)	166, 802, 958, 1306
TseI	GCWGC	6 cut(s)	893, 911, 1225, 1256, 1384, 1387
TspDTI	ATGAA	7 cut(s)	9, 54, 69, 342, 459, 852, 1106
TspGWI	ACGGA	1 cut(s)	1127
TspRI	CASTG	4 cut(s)	166, 802, 958, 1306
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	1 cut(s)	579
XhoI	CTCGAG	1 cut(s)	420
XmiI	GTMKAC	1 cut(s)	1150
XmnI	GAANNNNTTC	3 cut(s)	843, 975, 1435
ZraI	GACGTC	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.