Rroxscaffold_1G00053870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001559
Physical Location & Seq
Forward (+)
75077737 .. 75083648
5912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053870.1

Sequence Viewer

Length: 438 bp
ATGGATGCAAACTCCATTTTGCCCCTGCGTGTTGTTTCTTGCTTCGACACCTACGTTGCTTCTCAGTGCTATCGTGTCTTTGCTACTTCACTCCACAGAGAGGTGGATAGTGAAGGAAGTGGTGCTGGGAATTGCGCATCCGCTCTTTTACTCGCATCTGAGGACTTTTGGCAATATCAGCTGCAATCGATTTGCGGCGATCAAAAAGATAAACTTTCCTCAAACTTTGCAATCAACAAGGCACCTAACCCGGATCTTGTGTTCATCCGAACATCTACAAAGCATGCTCAAGCGCTTATCTTGATGCGACGCCATATGGACAAGACACTCGGATTGAAGTATATGTCGATCAAGAATGCAAGAGAGCTATGGGTAGCGCTAGAAGAGCGCTTTAGCAATGTCCAAGATTCCCTCCTCCCCGACTTGAAGGTTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

145

Amino Acids

16.32

Weight (kDa)

6.81

Isoelectric Point (pI)

40.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 143
AciI CCGC 2 cut(s) 141, 195
AclWI GGATC 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 310
AfeI AGCGCT 3 cut(s) 294, 378, 389
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 3 cut(s) 337, 427, 434
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 2 cut(s) 181, 367
AluI AGCT 2 cut(s) 181, 367
AlwI GGATC 1 cut(s) 261
Aor51HI AGCGCT 3 cut(s) 294, 378, 389
ApeKI GCWGC 1 cut(s) 181
AspLEI GCGC 4 cut(s) 137, 295, 379, 390
AsuC2I CCSGG 1 cut(s) 251
BanI GGYRCC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 168
BcnI CCSGG 1 cut(s) 251
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 3 cut(s) 296, 380, 391
BisI GCNGC 2 cut(s) 182, 196
BlsI GCNGC 2 cut(s) 183, 197
Bme1390I CCNGG 1 cut(s) 251
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 3 cut(s) 146, 164, 294
BpuEI CTTGAG 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 251
Bsa29I ATCGAT 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 310
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 403
BseCI ATCGAT 1 cut(s) 188
BseGI GGATG 3 cut(s) 10, 137, 264
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 77, 150
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 188
BsiSI CCGG 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 100
BsmI GAATGC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 199, 253, 348
BspACI CCGC 2 cut(s) 141, 195
BspCNI CTCAG 2 cut(s) 76, 151
BspDI ATCGAT 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 1 cut(s) 261
BspQI GCTCTTC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 143
BsrDI GCAATG 1 cut(s) 403
BssMI GATC 3 cut(s) 199, 253, 348
BssNI GRCGYC 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 378
BstACI GRCGYC 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 63, 159
BstF5I GGATG 3 cut(s) 10, 137, 264
BstH2I RGCGCY 3 cut(s) 296, 380, 391
BstHHI GCGC 4 cut(s) 137, 295, 379, 390
BstKTI GATC 3 cut(s) 202, 256, 351
BstMBI GATC 3 cut(s) 199, 253, 348
BstMWI GCNNNNNNNGC 2 cut(s) 178, 385
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 168
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 1 cut(s) 188
BsuTUI ATCGAT 1 cut(s) 188
BtsCI GGATG 3 cut(s) 10, 137, 264
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 285
CfoI GCGC 4 cut(s) 137, 295, 379, 390
ClaI ATCGAT 1 cut(s) 188
CseI GACGC 1 cut(s) 318
CviAII CATG 1 cut(s) 284
CviJI RGCY 2 cut(s) 181, 367
CviKI_1 RGCY 2 cut(s) 181, 367
DdeI CTNAG 2 cut(s) 63, 159
DpnI GATC 3 cut(s) 201, 255, 350
DpnII GATC 3 cut(s) 199, 253, 348
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco47III AGCGCT 3 cut(s) 294, 378, 389
FaeI CATG 1 cut(s) 287
FaiI YATR 6 cut(s) 285, 315, 317, 342, 344, 370
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 1 cut(s) 283
FauNDI CATATG 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 182, 196
FokI GGATG 3 cut(s) 17, 124, 251
Fsp4HI GCNGC 2 cut(s) 182, 196
FspBI CTAG 1 cut(s) 380
FspI TGCGCA 1 cut(s) 136
GlaI GCGC 4 cut(s) 136, 294, 378, 389
GluI GCNGC 2 cut(s) 182, 196
GsaI CCCAGC 1 cut(s) 129
HaeII RGCGCY 3 cut(s) 296, 380, 391
HapII CCGG 1 cut(s) 251
HgaI GACGC 1 cut(s) 318
HhaI GCGC 4 cut(s) 137, 295, 379, 390
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 1 cut(s) 287
Hin6I GCGC 4 cut(s) 135, 293, 377, 388
HinP1I GCGC 4 cut(s) 135, 293, 377, 388
HinfI GANTC 1 cut(s) 407
HpaII CCGG 1 cut(s) 251
Hpy188I TCNGA 3 cut(s) 160, 269, 332
Hpy188III TCNNGA 2 cut(s) 301, 352
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 107, 421
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 4 cut(s) 8, 184, 230, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 385
HpyF3I CTNAG 2 cut(s) 63, 159
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 1 cut(s) 287
HspAI GCGC 4 cut(s) 135, 293, 377, 388
Kzo9I GATC 3 cut(s) 199, 253, 348
LguI GCTCTTC 1 cut(s) 378
LpnPI CCDG 3 cut(s) 38, 111, 264
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 3 cut(s) 146, 164, 294
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 54
MalI GATC 3 cut(s) 201, 255, 350
MbiI CCGCTC 1 cut(s) 143
MboI GATC 3 cut(s) 199, 253, 348
MboII GAAGA 1 cut(s) 395
MflI RGATCY 1 cut(s) 253
MluCI AATT 1 cut(s) 130
MnlI CCTC 5 cut(s) 94, 154, 229, 422, 425
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 361
MwoI GCNNNNNNNGC 2 cut(s) 178, 385
NciI CCSGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 315
NdeII GATC 3 cut(s) 199, 253, 348
NlaIII CATG 1 cut(s) 287
NlaIV GGNNCC 1 cut(s) 243
NsbI TGCGCA 1 cut(s) 136
NspI RCATGY 1 cut(s) 287
PaeI GCATGC 1 cut(s) 287
PciSI GCTCTTC 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 183, 197
PspFI CCCAGC 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 181
SapI GCTCTTC 1 cut(s) 378
SatI GCNGC 2 cut(s) 182, 196
Sau3AI GATC 3 cut(s) 199, 253, 348
ScrFI CCNGG 1 cut(s) 251
SetI ASST 7 cut(s) 53, 57, 105, 183, 247, 369, 432
SfaNI GCATC 3 cut(s) 146, 164, 294
SmlI CTYRAG 1 cut(s) 288
SmoI CTYRAG 1 cut(s) 288
SphI GCATGC 1 cut(s) 287
Sse9I AATT 1 cut(s) 130
SsiI CCGC 2 cut(s) 141, 195
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 1 cut(s) 249
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 45, 188, 347
TasI AATT 1 cut(s) 130
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 1 cut(s) 407
TscAI CASTG 1 cut(s) 71
TseI GCWGC 1 cut(s) 181
TspDTI ATGAA 1 cut(s) 253
TspRI CASTG 1 cut(s) 71
XceI RCATGY 1 cut(s) 287
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.