Rh1AG025700

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001559
Physical Location & Seq
Forward (+)
4694340 .. 4695799
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG025700.1

Sequence Viewer

Length: 243 bp
ATGAAATTTCTGAAGGCTTGGGGAAAATTTGGGTTTGTCTTCGAAGAGGTTGCTGGGTTTTCGAAGAGTTGTGAGTTTAATTTGGGTATATCTTTGGCATATGGTAAAACCTATTATGAGGAGACCCTGACTGTTAATTTTGGTTTCAAAGGTTATGGGTTCATTTTTGTGCAGAGGTTATGGGTTCATTTTTGTGCAGCATATATTTTCAGTGCAGTCGTCTGCTATCTTCTTTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

80

Amino Acids

9.28

Weight (kDa)

8.46

Isoelectric Point (pI)

9.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 5, 26
AcuI CTGAAG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 148
Alw26I GTCTC 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 2 cut(s) 5, 26
AsuII TTCGAA 2 cut(s) 42, 62
BbsI GAAGAC 1 cut(s) 31
BbvI GCAGC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 32, 66
BcoDI GTCTC 1 cut(s) 116
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 31
Bpu14I TTCGAA 2 cut(s) 42, 62
BsaI GGTCTC 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 209
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 3 cut(s) 191, 216, 234
BsmAI GTCTC 1 cut(s) 116
Bso31I GGTCTC 1 cut(s) 116
Bsp119I TTCGAA 2 cut(s) 42, 62
BspT104I TTCGAA 2 cut(s) 42, 62
BspTNI GGTCTC 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 2 cut(s) 39, 59
BstBI TTCGAA 2 cut(s) 42, 62
BstMAI GTCTC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 217
CviJI RGCY 1 cut(s) 17
CviKI_1 RGCY 1 cut(s) 17
Eam1104I CTCTTC 2 cut(s) 39, 59
EarI CTCTTC 2 cut(s) 39, 59
Eco31I GGTCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 32
FaiI YATR 8 cut(s) 89, 100, 102, 117, 156, 181, 202, 204
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 198
GsaI CCCAGC 1 cut(s) 57
Hpy188I TCNGA 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 3 cut(s) 172, 197, 215
LpnPI CCDG 2 cut(s) 39, 140
Lsp1109I GCAGC 1 cut(s) 209
MboII GAAGA 4 cut(s) 31, 56, 76, 221
MfeI CAATTG 1 cut(s) 238
MluCI AATT 5 cut(s) 5, 26, 79, 136, 238
MnlI CCTC 3 cut(s) 40, 112, 168
MseI TTAA 2 cut(s) 78, 135
MslI CAYNNNNRTG 2 cut(s) 167, 192
MunI CAATTG 1 cut(s) 238
NdeI CATATG 1 cut(s) 100
NspV TTCGAA 2 cut(s) 42, 62
PkrI GCNGC 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 53
RseI CAYNNNNRTG 2 cut(s) 167, 192
SaqAI TTAA 2 cut(s) 78, 135
SatI GCNGC 1 cut(s) 198
SetI ASST 4 cut(s) 51, 113, 154, 179
SfuI TTCGAA 2 cut(s) 42, 62
SgeI CNNG 3 cut(s) 30, 66, 139
SmiMI CAYNNNNRTG 2 cut(s) 167, 192
Sse9I AATT 5 cut(s) 5, 26, 79, 136, 238
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 2 cut(s) 42, 62
TasI AATT 5 cut(s) 5, 26, 79, 136, 238
Tru1I TTAA 2 cut(s) 78, 135
Tru9I TTAA 2 cut(s) 78, 135
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 197
TspDTI ATGAA 3 cut(s) 17, 151, 176
TspRI CASTG 1 cut(s) 217
XapI RAATTY 2 cut(s) 5, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.