Rmu_sc0001484.1_g000012

U4 U6 small nuclear ribonucleoprotein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001484.1
Physical Location & Seq
Reverse (-)
53853 .. 58171
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001484.1_g000012.1.cds

Sequence Viewer

Length: 1839 bp
atgatccaagcccacctcagcccaacccgcccttctgccggtatagtcccctcccccccccgcttctttttactcttcttcttcttcttcttcatctttcttcctaacaaaacccacgatacccaatcactcccaaccctctcttatctccgttttgttcttcaatcggcgcccgtccttcaggcactactcgccggaagcttcttgagcctgaaacaatggttagcaactctagccgattcatttcttgctgatcttgatgagctatctgacaatgaagctgatgttcctgtgagtattttgctgcctcttttttttattttttacgattcatttcttgctgatcttgatgagctatctgacaatgaagctgatgttcctgcaactctagccgattcatttcttgctgatcttgatgagctatctgacaatgaagctgatgttcctgttgaagatgatgctgatgttgcaaacatggaggaagatgttgatggggacttggcagacttagagacacttaactatgatgatctggatagtgtttcaaaattgcagaaatcacaaagatttgctgatataatgcagaaagtggaaggtgcacttgagaagggttccgatatgtcaaaccatgcactagttttggaagatgatccagaatatcagctgattgtggactgtaatgctttgtcagttgacattgagaatgaacttgtaatcatccacaattttattcgtgacaaataccggccaaaatttccagagctcgagtcacttgttcatcatccaattgattatgctcgagttgttcagaaaattgggaatgaaatggatgtaacccttgttgatctggaggggcttttaccttcagcaactattatggttgtgtcagttacagcttcaactacaagtggaaagccacttccagaggacgtcctggagaaaatagttgatgcatgtgatcgagcccttgctctcgattcagcaaagaaaaaagttcttgattttgtagaaagtagaatgggttttattgcaccaaatctttctgctattgttgggagtgctgttgcggcgaaacttatggggatggctggtggtcttgctgccttagctaaaatgcctgcttgtaatgttcagcttcttggtgctaagaaaaaaaatcttgctgggttttccactgcaacatcacaatatcgtattggttatgttgaggagacagagatatttcaaactacaccccctgctcttaggatgcgtgctggtcggctcttggctgcaaaatcaacccttgcagcgcgggtggattctacgagaggagatccatctgggaacaccggaaaggcattccgagaggagatccgtaagaaaattgaaaaatggcaggagcctccccctgcaaagcaacctaaaccacttcccgttcctgattctgaacctaaaaagaagagaggtggacgtcgactcaggaagatgaaagaaagatatgcgataacagacatgaggaagctcgcaaacaggatgcagtttggcatacctgaagagagttctttaggggatggactgggtgaaggatatggaatgcttggtcaggctgggagtggcaagctgcgtgtgtcgatgggtcagagcaaacttgctgctaaagttgctaaaaagtttaaggataagaattatggaagcactggtggtgctacatctggactgacttcaagtttggcatttactcctgtgcaggggattgagctctcaaatcctcaggcccatggacagcagcttggcagtggaactcaaagcacctatttctctgaaacaggaacattttcaaaaatcaagaggatctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

612

Amino Acids

66.72

Weight (kDa)

5.09

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 933, 1456
AccB1I GGYRCC 1 cut(s) 169
AccI GTMKAC 1 cut(s) 1456
AccII CGCG 1 cut(s) 1294
AciI CCGC 4 cut(s) 28, 61, 1067, 1294
AclWI GGATC 3 cut(s) 644, 1310, 1348
AcoI YGGCCR 1 cut(s) 746
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 3 cut(s) 164, 849, 1554
AcyI GRCGYC 3 cut(s) 170, 930, 1453
AfiI CCNNNNNNNGG 2 cut(s) 38, 1730
AgsI TTSAA 8 cut(s) 164, 452, 546, 900, 1226, 1370, 1707, 1821
AhlI ACTAGT 1 cut(s) 634
AjnI CCWGG 1 cut(s) 933
AjuI GAANNNNNNNTTGG 2 cut(s) 16, 48
Alw21I GWGCWC 3 cut(s) 601, 765, 1743
Alw26I GTCTC 2 cut(s) 506, 1205
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 3 cut(s) 644, 1310, 1348
Ama87I CYCGRG 2 cut(s) 764, 798
AoxI GGCC 2 cut(s) 746, 1755
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 7 cut(s) 304, 1100, 1271, 1289, 1603, 1634, 1768
ApoI RAATTY 1 cut(s) 752
ArsI GACNNNNNNTTYG 2 cut(s) 1693, 1725
Asp700I GAANNNNTTC 1 cut(s) 1816
AspLEI GCGC 2 cut(s) 172, 1294
AspS9I GGNCC 1 cut(s) 1756
AsuHPI GGTGA 1 cut(s) 1574
AvaI CYCGRG 2 cut(s) 764, 798
AxyI CCTNAGG 1 cut(s) 1752
BaeGI GKGCMC 1 cut(s) 601
BanI GGYRCC 1 cut(s) 169
BanII GRGCYC 3 cut(s) 765, 967, 1743
Bbv12I GWGCWC 3 cut(s) 601, 765, 1743
BbvCI CCTCAGC 1 cut(s) 17
BbvI GCAGC 7 cut(s) 291, 1087, 1258, 1301, 1590, 1621, 1780
BccI CCATC 5 cut(s) 485, 1078, 1327, 1547, 1609
BciT130I CCWGG 1 cut(s) 935
BcoDI GTCTC 2 cut(s) 506, 1205
BcuI ACTAGT 1 cut(s) 634
BfaI CTAG 3 cut(s) 233, 389, 635
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 8 cut(s) 305, 1068, 1101, 1272, 1290, 1604, 1635, 1769
BlsI GCNGC 8 cut(s) 306, 1069, 1102, 1273, 1291, 1605, 1636, 1770
Bme1390I CCNGG 1 cut(s) 935
BmeT110I CYCGRG 2 cut(s) 764, 798
BmgT120I GGNCC 1 cut(s) 1756
BmiI GGNNCC 3 cut(s) 171, 613, 1383
BmrFI CCNGG 1 cut(s) 935
BmrI ACTGGG 1 cut(s) 1568
BmsI GCATC 4 cut(s) 448, 940, 1239, 1506
BmuI ACTGGG 1 cut(s) 1568
BpmI CTGGAG 2 cut(s) 869, 956
Bpu10I CCTNAGC 2 cut(s) 17, 1105
BpuEI CTTGAG 2 cut(s) 226, 623
BsaHI GRCGYC 3 cut(s) 170, 930, 1453
BsaJI CCNNGG 1 cut(s) 1759
BsaWI WCCGGW 1 cut(s) 1331
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 1730
Bse118I RCCGGY 2 cut(s) 38, 744
Bse1I ACTGG 2 cut(s) 1563, 1684
Bse21I CCTNAGG 1 cut(s) 1752
BseBI CCWGG 1 cut(s) 935
BseDI CCNNGG 1 cut(s) 1759
BseGI GGATG 7 cut(s) 717, 781, 835, 1089, 1254, 1521, 1558
BseLI CCNNNNNNNGG 2 cut(s) 38, 1730
BseMII CTCAG 3 cut(s) 31, 1474, 1766
BseNI ACTGG 2 cut(s) 1563, 1684
BseRI GAGGAG 3 cut(s) 1223, 1326, 1364
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 7 cut(s) 291, 1087, 1258, 1301, 1590, 1621, 1780
BseYI CCCAGC 2 cut(s) 1163, 1589
BsgI GTGCAG 1 cut(s) 1748
Bsh1236I CGCG 1 cut(s) 1294
BshFI GGCC 2 cut(s) 748, 1757
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 3 cut(s) 601, 765, 1743
BsiHKCI CYCGRG 2 cut(s) 764, 798
BsiSI CCGG 4 cut(s) 39, 195, 745, 1332
BslFI GGGAC 2 cut(s) 32, 509
BslI CCNNNNNNNGG 2 cut(s) 38, 1730
BsmAI GTCTC 2 cut(s) 506, 1205
BsmFI GGGAC 2 cut(s) 32, 509
BsmI GAATGC 2 cut(s) 1340, 1581
BsnI GGCC 2 cut(s) 748, 1757
BsoBI CYCGRG 2 cut(s) 764, 798
Bsp1286I GDGCHC 4 cut(s) 601, 765, 967, 1743
Bsp19I CCATGG 1 cut(s) 1759
BspACI CCGC 4 cut(s) 28, 61, 1067, 1294
BspANI GGCC 2 cut(s) 748, 1757
BspCNI CTCAG 3 cut(s) 30, 1473, 1765
BspFNI CGCG 1 cut(s) 1294
BspLI GGNNCC 3 cut(s) 171, 613, 1383
BspPI GGATC 3 cut(s) 644, 1310, 1348
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 2 cut(s) 38, 744
BsrI ACTGG 2 cut(s) 1563, 1684
BssAI RCCGGY 2 cut(s) 38, 744
BssECI CCNNGG 1 cut(s) 1759
BssNI GRCGYC 3 cut(s) 170, 930, 1453
BssT1I CCWWGG 1 cut(s) 1759
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 3 cut(s) 80, 1436, 1530
BstACI GRCGYC 3 cut(s) 170, 930, 1453
BstC8I GCNNGC 4 cut(s) 1119, 1254, 1506, 1601
BstDEI CTNAG 7 cut(s) 17, 508, 1105, 1146, 1244, 1460, 1752
BstDSI CCRYGG 1 cut(s) 1759
BstF5I GGATG 7 cut(s) 717, 781, 835, 1089, 1254, 1521, 1558
BstFNI CGCG 1 cut(s) 1294
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 2 cut(s) 172, 1294
BstMAI GTCTC 2 cut(s) 506, 1205
BstMWI GCNNNNNNNGC 9 cut(s) 27, 191, 207, 233, 389, 467, 1067, 1106, 1643
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 601
BstUI CGCG 1 cut(s) 1294
BstV1I GCAGC 7 cut(s) 291, 1087, 1258, 1301, 1590, 1621, 1780
BstX2I RGATCY 3 cut(s) 1315, 1353, 1833
BstYI RGATCY 3 cut(s) 1315, 1353, 1833
Bsu36I CCTNAGG 1 cut(s) 1752
BsuRI GGCC 2 cut(s) 748, 1757
BtgI CCRYGG 1 cut(s) 1759
BtsCI GGATG 7 cut(s) 717, 781, 835, 1089, 1254, 1521, 1558
BtsI GCAGTG 2 cut(s) 1173, 1783
BtsIMutI CAGTG 3 cut(s) 1173, 1677, 1783
Cac8I GCNNGC 4 cut(s) 1119, 1254, 1506, 1601
CfoI GCGC 2 cut(s) 172, 1294
Cfr10I RCCGGY 2 cut(s) 38, 744
Cfr13I GGNCC 1 cut(s) 1756
CviAII CATG 5 cut(s) 475, 629, 954, 1495, 1760
DdeI CTNAG 7 cut(s) 17, 508, 1105, 1146, 1244, 1460, 1752
DinI GGCGCC 1 cut(s) 171
EaeI YGGCCR 1 cut(s) 746
Eam1104I CTCTTC 3 cut(s) 80, 1436, 1530
EarI CTCTTC 3 cut(s) 80, 1436, 1530
Ecl136II GAGCTC 2 cut(s) 763, 1741
Eco130I CCWWGG 1 cut(s) 1759
Eco24I GRGCYC 3 cut(s) 765, 967, 1743
Eco53kI GAGCTC 2 cut(s) 763, 1741
Eco57I CTGAAG 3 cut(s) 164, 849, 1554
Eco81I CCTNAGG 1 cut(s) 1752
Eco88I CYCGRG 2 cut(s) 764, 798
EcoICRI GAGCTC 2 cut(s) 763, 1741
EcoRII CCWGG 1 cut(s) 933
EcoT14I CCWWGG 1 cut(s) 1759
EcoT22I ATGCAT 1 cut(s) 955
EcoT38I GRGCYC 3 cut(s) 765, 967, 1743
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 1759
FaeI CATG 5 cut(s) 478, 632, 957, 1498, 1763
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FaqI GGGAC 2 cut(s) 32, 509
FatI CATG 5 cut(s) 474, 628, 953, 1494, 1759
FauI CCCGC 3 cut(s) 35, 68, 1287
FblI GTMKAC 1 cut(s) 1456
Fnu4HI GCNGC 8 cut(s) 305, 1068, 1101, 1272, 1290, 1604, 1635, 1769
FokI GGATG 7 cut(s) 704, 768, 842, 1096, 1261, 1528, 1565
FriOI GRGCYC 3 cut(s) 765, 967, 1743
Fsp4HI GCNGC 8 cut(s) 305, 1068, 1101, 1272, 1290, 1604, 1635, 1769
FspBI CTAG 3 cut(s) 233, 389, 635
GlaI GCGC 2 cut(s) 171, 1293
GluI GCNGC 8 cut(s) 305, 1068, 1101, 1272, 1290, 1604, 1635, 1769
GsaI CCCAGC 2 cut(s) 1167, 1593
GsuI CTGGAG 2 cut(s) 869, 956
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 748, 1757
HapII CCGG 4 cut(s) 39, 195, 745, 1332
HhaI GCGC 2 cut(s) 172, 1294
Hin1I GRCGYC 3 cut(s) 170, 930, 1453
Hin1II CATG 5 cut(s) 478, 632, 957, 1498, 1763
Hin6I GCGC 2 cut(s) 170, 1292
HinP1I GCGC 2 cut(s) 170, 1292
HincII GTYRAC 2 cut(s) 694, 1457
HindII GTYRAC 2 cut(s) 694, 1457
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 8 cut(s) 239, 329, 395, 767, 977, 1301, 1424, 1458
HpaII CCGG 4 cut(s) 39, 195, 745, 1332
HphI GGTGA 1 cut(s) 1574
Hpy166II GTNNAC 5 cut(s) 599, 673, 694, 1451, 1457
Hpy8I GTNNAC 5 cut(s) 599, 673, 694, 1451, 1457
Hpy99I CGWCG 1 cut(s) 1458
HpyAV CCTTC 6 cut(s) 42, 188, 587, 601, 873, 1559
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 2 cut(s) 930, 1453
HpyF10VI GCNNNNNNNGC 9 cut(s) 27, 191, 207, 233, 389, 467, 1067, 1106, 1643
HpyF3I CTNAG 7 cut(s) 17, 508, 1105, 1146, 1244, 1460, 1752
HpySE526I ACGT 2 cut(s) 930, 1453
Hsp92I GRCGYC 3 cut(s) 170, 930, 1453
Hsp92II CATG 5 cut(s) 478, 632, 957, 1498, 1763
HspAI GCGC 2 cut(s) 170, 1292
KasI GGCGCC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 1381
Lsp1109I GCAGC 7 cut(s) 291, 1087, 1258, 1301, 1590, 1621, 1780
LweI GCATC 4 cut(s) 448, 940, 1239, 1506
MaeI CTAG 3 cut(s) 233, 389, 635
MaeII ACGT 2 cut(s) 930, 1453
MaeIII GTNAC 4 cut(s) 734, 768, 832, 889
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 3 cut(s) 1315, 1353, 1833
MhlI GDGCHC 4 cut(s) 601, 765, 967, 1743
MluCI AATT 7 cut(s) 548, 724, 752, 786, 813, 1365, 1666
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 2 cut(s) 776, 1452
Mph1103I ATGCAT 1 cut(s) 955
MroXI GAANNNNTTC 1 cut(s) 1816
MseI TTAA 2 cut(s) 519, 1656
MspA1I CMGCKG 1 cut(s) 664
MspI CCGG 4 cut(s) 39, 195, 745, 1332
MspR9I CCNGG 1 cut(s) 935
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 2 cut(s) 1340, 1581
MvaI CCWGG 1 cut(s) 935
MvnI CGCG 1 cut(s) 1294
MwoI GCNNNNNNNGC 9 cut(s) 27, 191, 207, 233, 389, 467, 1067, 1106, 1643
NarI GGCGCC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 1759
NlaIII CATG 5 cut(s) 478, 632, 957, 1498, 1763
NlaIV GGNNCC 3 cut(s) 171, 613, 1383
NmuCI GTSAC 2 cut(s) 734, 768
NsiI ATGCAT 1 cut(s) 955
NspI RCATGY 1 cut(s) 957
PaeR7I CTCGAG 2 cut(s) 764, 798
PctI GAATGC 2 cut(s) 1340, 1581
PdmI GAANNNNTTC 1 cut(s) 1816
PfeI GAWTC 6 cut(s) 239, 329, 395, 977, 1301, 1424
PfoI TCCNGGA 1 cut(s) 933
PkrI GCNGC 8 cut(s) 306, 1069, 1102, 1273, 1291, 1605, 1636, 1770
PleI GAGTC 2 cut(s) 775, 1452
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 2 cut(s) 775, 1452
Psp124BI GAGCTC 2 cut(s) 765, 1743
Psp6I CCWGG 1 cut(s) 933
PspFI CCCAGC 2 cut(s) 1163, 1589
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 3 cut(s) 171, 613, 1383
PspPI GGNCC 1 cut(s) 1756
PspXI VCTCGAGB 2 cut(s) 764, 798
PsuI RGATCY 3 cut(s) 1315, 1353, 1833
PvuII CAGCTG 1 cut(s) 664
SacI GAGCTC 2 cut(s) 765, 1743
SalI GTCGAC 1 cut(s) 1455
SaqAI TTAA 2 cut(s) 519, 1656
SatI GCNGC 8 cut(s) 305, 1068, 1101, 1272, 1290, 1604, 1635, 1769
Sau96I GGNCC 1 cut(s) 1756
SchI GAGTC 2 cut(s) 776, 1452
ScrFI CCNGG 1 cut(s) 935
SduI GDGCHC 4 cut(s) 601, 765, 967, 1743
SfaNI GCATC 4 cut(s) 448, 940, 1239, 1506
SfoI GGCGCC 1 cut(s) 171
Sfr274I CTCGAG 2 cut(s) 764, 798
SlaI CTCGAG 2 cut(s) 764, 798
SmlI CTYRAG 4 cut(s) 205, 602, 764, 798
SmoI CTYRAG 4 cut(s) 205, 602, 764, 798
SpeI ACTAGT 1 cut(s) 634
Sse9I AATT 7 cut(s) 548, 724, 752, 786, 813, 1365, 1666
SsiI CCGC 4 cut(s) 28, 61, 1067, 1294
SspDI GGCGCC 1 cut(s) 169
SspMI CTAG 3 cut(s) 233, 389, 635
SstI GAGCTC 2 cut(s) 765, 1743
StyD4I CCNGG 1 cut(s) 933
StyI CCWWGG 1 cut(s) 1759
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 2 cut(s) 933, 1456
TaqI TCGA 6 cut(s) 765, 799, 961, 975, 1456, 1613
TasI AATT 7 cut(s) 548, 724, 752, 786, 813, 1365, 1666
TauI GCSGC 1 cut(s) 1070
TfiI GAWTC 6 cut(s) 239, 329, 395, 977, 1301, 1424
Tru1I TTAA 2 cut(s) 519, 1656
Tru9I TTAA 2 cut(s) 519, 1656
TscAI CASTG 3 cut(s) 1180, 1684, 1783
TseFI GTSAC 2 cut(s) 734, 768
TseI GCWGC 7 cut(s) 304, 1100, 1271, 1289, 1603, 1634, 1768
Tsp45I GTSAC 2 cut(s) 734, 768
TspGWI ACGGA 2 cut(s) 140, 1346
TspRI CASTG 3 cut(s) 1180, 1684, 1783
VneI GTGCAC 1 cut(s) 597
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 957
XhoI CTCGAG 2 cut(s) 764, 798
XmiI GTMKAC 1 cut(s) 1456
XmnI GAANNNNTTC 1 cut(s) 1816
XspI CTAG 3 cut(s) 233, 389, 635
ZraI GACGTC 2 cut(s) 931, 1454
Zsp2I ATGCAT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.