Rh1BG171200

Cytosolic domain of 10TM putative phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001559
Physical Location & Seq
Forward (+)
27313069 .. 27327394
14326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG171200.1

Sequence Viewer

Length: 657 bp
ATGATCCTCTATGCGCTGTTAACCTCAGTGGGAATTAATCTGGGTCTATGTTTGCTATTCTTCACTCTCTACTCTATTCTGAGGAAGCAACCCAGTAACGCCAAGGTTTATGCACCGCGTTCTGTTGCTGCAAAAGGAGCACCAGCTGAAACAAATGGCTTCGATTTCGATAGATTGTTGCCCACTGCGGGTTGGGTGAAACGGGCATGGCAGCCCTCTGAAGATCAGCTCTTGTCTGTCACCAGTTTGGATGCCGTGGTGTTTATGCGCATTTTCATCTTCAGGTTATGGGTTCATTTTTGTGCAGCATATATTTTCAGTGCAGTCGTCTGCTATCTTCTTTACAATGAGTACAGTTATATCTCATCAAGAAGAATTGCTCACTTCTATTCATCGAAACCTCAGCCTAATCAGTTCACAGTATTGGTTCGTGGTGCTTCAGATTTTCTACCAATAAAGAAAATAAAGATTTTCAATAGTCTTGGAGAGGAACATGCAACTCATGCTCACCACTCCGACCGCAATATCCGAGAAAATCTGGTAGCCAAGCTCCTAAAATATGTTGAGTGGGCAACATGGGATTGTGGTTGTTATAACATAGGTAATATCAGGGAAGGGCTGATTTGTGACAGGATGGGGATTGGCTTACATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

218

Amino Acids

24.82

Weight (kDa)

9.07

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 5 - 93 2.8e-17 Late exocytosis, associated with Golgi transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 594
Acc16I TGCGCA 1 cut(s) 269
AccII CGCG 1 cut(s) 118
AciI CCGC 3 cut(s) 116, 188, 520
AcuI CTGAAG 3 cut(s) 240, 265, 423
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 475
AluBI AGCT 3 cut(s) 146, 229, 550
AluI AGCT 3 cut(s) 146, 229, 550
Alw21I GWGCWC 1 cut(s) 142
ApeKI GCWGC 3 cut(s) 128, 211, 305
AseI ATTAAT 1 cut(s) 36
AspLEI GCGC 2 cut(s) 16, 270
AsuHPI GGTGA 3 cut(s) 208, 232, 500
Bbv12I GWGCWC 1 cut(s) 142
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 3 cut(s) 115, 223, 317
BccI CCATC 1 cut(s) 628
BceAI ACGGC 1 cut(s) 239
BisI GCNGC 3 cut(s) 129, 212, 306
BlsI GCNGC 3 cut(s) 130, 213, 307
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 402
BsaJI CCNNGG 2 cut(s) 102, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 2 cut(s) 93, 243
Bse3DI GCAATG 1 cut(s) 649
BseDI CCNNGG 2 cut(s) 102, 255
BseGI GGATG 2 cut(s) 256, 639
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 3 cut(s) 39, 71, 416
BseNI ACTGG 2 cut(s) 93, 243
BseXI GCAGC 3 cut(s) 115, 223, 317
BsgI GTGCAG 2 cut(s) 324, 342
Bsh1236I CGCG 1 cut(s) 118
Bsh1285I CGRYCG 1 cut(s) 520
BsiEI CGRYCG 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 3, 223
BspACI CCGC 3 cut(s) 116, 188, 520
BspCNI CTCAG 3 cut(s) 38, 72, 415
BspFNI CGCG 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 649
BsrI ACTGG 2 cut(s) 93, 243
BssECI CCNNGG 2 cut(s) 102, 255
BssMI GATC 2 cut(s) 3, 223
BssT1I CCWWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 356, 421
BstAPI GCANNNNNTGC 1 cut(s) 503
BstDEI CTNAG 3 cut(s) 25, 80, 402
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 2 cut(s) 256, 639
BstFNI CGCG 1 cut(s) 118
BstHHI GCGC 2 cut(s) 16, 270
BstKTI GATC 2 cut(s) 6, 226
BstMBI GATC 2 cut(s) 3, 223
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 3 cut(s) 137, 503, 651
BstNSI RCATGY 1 cut(s) 497
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 3 cut(s) 115, 223, 317
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 2 cut(s) 256, 639
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 33, 183, 325
CfoI GCGC 2 cut(s) 16, 270
Csp6I GTAC 1 cut(s) 352
CviAII CATG 4 cut(s) 207, 494, 503, 576
CviJI RGCY 9 cut(s) 146, 159, 214, 229, 406, 545, 550, 619, 645
CviKI_1 RGCY 9 cut(s) 146, 159, 214, 229, 406, 545, 550, 619, 645
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 3 cut(s) 25, 80, 402
DpnI GATC 2 cut(s) 5, 225
DpnII GATC 2 cut(s) 3, 223
Eco130I CCWWGG 1 cut(s) 102
Eco57I CTGAAG 3 cut(s) 240, 265, 423
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 4 cut(s) 210, 497, 506, 579
FatI CATG 4 cut(s) 206, 493, 502, 575
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 3 cut(s) 129, 212, 306
FokI GGATG 2 cut(s) 263, 646
Fsp4HI GCNGC 3 cut(s) 129, 212, 306
FspAI RTGCGCAY 1 cut(s) 269
FspI TGCGCA 1 cut(s) 269
GlaI GCGC 2 cut(s) 15, 269
GluI GCNGC 3 cut(s) 129, 212, 306
HhaI GCGC 2 cut(s) 16, 270
Hin1II CATG 4 cut(s) 210, 497, 506, 579
Hin6I GCGC 2 cut(s) 14, 268
HinP1I GCGC 2 cut(s) 14, 268
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HpaI GTTAAC 1 cut(s) 21
HphI GGTGA 3 cut(s) 208, 232, 500
Hpy166II GTNNAC 2 cut(s) 21, 417
Hpy188I TCNGA 5 cut(s) 81, 220, 442, 517, 530
Hpy188III TCNNGA 1 cut(s) 369
Hpy8I GTNNAC 2 cut(s) 21, 417
HpyAV CCTTC 1 cut(s) 608
HpyCH4III ACNGT 2 cut(s) 356, 421
HpyCH4V TGCA 5 cut(s) 113, 131, 305, 323, 497
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 503, 651
HpyF3I CTNAG 3 cut(s) 25, 80, 402
Hsp92II CATG 4 cut(s) 210, 497, 506, 579
HspAI GCGC 2 cut(s) 14, 268
KspAI GTTAAC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 3, 223
LmnI GCTCC 2 cut(s) 137, 555
LpnPI CCDG 8 cut(s) 26, 106, 156, 256, 268, 524, 595, 616
Lsp1109I GCAGC 3 cut(s) 115, 223, 317
LweI GCATC 1 cut(s) 241
MaeIII GTNAC 3 cut(s) 95, 238, 626
MalI GATC 2 cut(s) 5, 225
MboI GATC 2 cut(s) 3, 223
MboII GAAGA 5 cut(s) 52, 233, 271, 329, 384
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 33, 375
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 6 cut(s) 17, 34, 75, 226, 411, 481
MseI TTAA 2 cut(s) 20, 36
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 146
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 137, 503, 651
NdeII GATC 2 cut(s) 3, 223
NlaIII CATG 4 cut(s) 210, 497, 506, 579
NmuCI GTSAC 2 cut(s) 238, 626
NsbI TGCGCA 1 cut(s) 269
NspI RCATGY 1 cut(s) 497
PkrI GCNGC 3 cut(s) 130, 213, 307
PshBI ATTAAT 1 cut(s) 36
PsiI TTATAA 1 cut(s) 594
PvuII CAGCTG 1 cut(s) 146
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 20, 36
SatI GCNGC 3 cut(s) 129, 212, 306
Sau3AI GATC 2 cut(s) 3, 223
SduI GDGCHC 1 cut(s) 142
SetI ASST 8 cut(s) 26, 108, 148, 231, 287, 403, 552, 604
SfaNI GCATC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 33, 375
SsiI CCGC 3 cut(s) 116, 188, 520
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 356, 421
TaqI TCGA 3 cut(s) 162, 168, 395
TasI AATT 2 cut(s) 33, 375
TatI WGTACW 1 cut(s) 351
Tru1I TTAA 2 cut(s) 20, 36
Tru9I TTAA 2 cut(s) 20, 36
TscAI CASTG 3 cut(s) 33, 190, 325
TseFI GTSAC 2 cut(s) 238, 626
TseI GCWGC 3 cut(s) 128, 211, 305
Tsp45I GTSAC 2 cut(s) 238, 626
TspDTI ATGAA 3 cut(s) 265, 284, 381
TspRI CASTG 3 cut(s) 33, 190, 325
VspI ATTAAT 1 cut(s) 36
XceI RCATGY 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.