RchiOBHm_Chr1g0315331

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
2469592 .. 2470780
1189 bp
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UTR
Exon/CDS
Intron
PRQ54585

Sequence Viewer

Length: 357 bp
ATGGATGAAAAGCCAATTTTGCCCCTGCCTTCTGTTTCTTGCTTCGACACCTGGGGTGTTGTTCAGTGCGTGTTGGTTTTGCCTCGACACCTGGAGTCCTCTCAGTCCTATCGTGTCTTCGCTACTTCGCTCCACAGAGAGTTGGAGAAAGAGGGAGAGATAGCGAAGGAGGTGGTACTGTTTGTTAGCTCGGGAGATTTCAGCTCCCTGCGTAGATTCGGATTCGATCTTCCCTGCGTAGATTGGTTGAACGCAGAAAGCCTTGGTTCCTGGGAGATTTCAGCTCGGGAAAGCTTTCGCAGTGTTCGTTTTCGCAGTATAATAAGCATTGATATTTTCCTGAAACAATTACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.54

Weight (kDa)

5.67

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 177
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 3 cut(s) 50, 90, 269
AluBI AGCT 4 cut(s) 189, 204, 284, 294
AluI AGCT 4 cut(s) 189, 204, 284, 294
Ama87I CYCGRG 2 cut(s) 190, 285
Asp700I GAANNNNTTC 1 cut(s) 294
AvaI CYCGRG 2 cut(s) 190, 285
BbsI GAAGAC 1 cut(s) 109
BciT130I CCWGG 3 cut(s) 52, 92, 271
Bme1390I CCNGG 3 cut(s) 52, 92, 271
BmeT110I CYCGRG 2 cut(s) 190, 285
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 3 cut(s) 52, 92, 271
BpiI GAAGAC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 51, 262, 270
BseBI CCWGG 3 cut(s) 52, 92, 271
BseDI CCNNGG 3 cut(s) 51, 262, 270
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 116
BsiHKCI CYCGRG 2 cut(s) 190, 285
BsoBI CYCGRG 2 cut(s) 190, 285
Bsp143I GATC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 268
BssECI CCNNGG 3 cut(s) 51, 262, 270
BssMI GATC 1 cut(s) 226
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 3 cut(s) 52, 92, 271
Bst4CI ACNGT 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 3 cut(s) 52, 92, 271
BstSCI CCNGG 3 cut(s) 50, 90, 269
BstV2I GAAGAC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 71, 307
Csp6I GTAC 1 cut(s) 176
CviJI RGCY 6 cut(s) 13, 189, 204, 261, 284, 294
CviKI_1 RGCY 6 cut(s) 13, 189, 204, 261, 284, 294
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 262
Eco88I CYCGRG 2 cut(s) 190, 285
EcoRII CCWGG 3 cut(s) 50, 90, 269
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaiI YATR 1 cut(s) 320
FokI GGATG 1 cut(s) 17
GsuI CTGGAG 1 cut(s) 113
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 3 cut(s) 95, 216, 222
Hpy188I TCNGA 1 cut(s) 221
Hpy188III TCNNGA 3 cut(s) 192, 287, 340
HpyAV CCTTC 2 cut(s) 39, 160
HpyCH4III ACNGT 1 cut(s) 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 102
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 135, 209
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 109, 221
MluCI AATT 2 cut(s) 15, 347
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 93, 109, 145, 163
MroXI GAANNNNTTC 1 cut(s) 294
MspR9I CCNGG 3 cut(s) 52, 92, 271
MvaI CCWGG 3 cut(s) 52, 92, 271
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PdmI GAANNNNTTC 1 cut(s) 294
PfeI GAWTC 2 cut(s) 216, 222
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 3 cut(s) 50, 90, 269
PspGI CCWGG 3 cut(s) 50, 90, 269
PspN4I GGNNCC 1 cut(s) 268
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 52, 92, 271
SetI ASST 7 cut(s) 53, 93, 174, 191, 206, 286, 296
Sse9I AATT 2 cut(s) 15, 347
StyD4I CCNGG 3 cut(s) 50, 90, 269
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 45, 85, 225
TasI AATT 2 cut(s) 15, 347
TfiI GAWTC 2 cut(s) 216, 222
TscAI CASTG 2 cut(s) 71, 307
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 2 cut(s) 71, 307
XmnI GAANNNNTTC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.