RchiOBHm_Chr7g0232501

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001559
Physical Location & Seq
Reverse (-)
56621250 .. 56633443
12194 bp
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UTR
Exon/CDS
Intron
PRQ20839

Sequence Viewer

Length: 231 bp
ATGCAAAGAAGTGTGTATTATTCTTCTGCCGCTGTTCCTGTGTACATTGTTTGGGATTATCTCACTGTCTTATTGCTATTCAGGTTGTTGCATAGTTCCGCAAGATCAAGCAACAGTTTTCGTCCAAATAAATCTGCATGCCGGCCTCCAAGCAAAGTGCGGGCAACTATTGCTTGTACGAAAGCTAAACTACACTTTTCCTGTTCATTTCGCATACGACAAAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.74

Weight (kDa)

10.5

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 30, 99, 160
AfaI GTAC 2 cut(s) 44, 178
AluBI AGCT 1 cut(s) 185
AluI AGCT 1 cut(s) 185
AoxI GGCC 1 cut(s) 143
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 141
BshFI GGCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 142
BsnI GGCC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 1 cut(s) 104
BspACI CCGC 3 cut(s) 30, 99, 160
BspANI GGCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 141
BssMI GATC 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 67, 116
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 3 cut(s) 139, 143, 162
BstKTI GATC 1 cut(s) 107
BstMBI GATC 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 141
BsuRI GGCC 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 3 cut(s) 139, 143, 162
Cfr10I RCCGGY 1 cut(s) 141
Csp6I GTAC 2 cut(s) 43, 177
CviAII CATG 1 cut(s) 138
CviJI RGCY 2 cut(s) 145, 185
CviKI_1 RGCY 2 cut(s) 145, 185
CviQI GTAC 2 cut(s) 43, 177
DpnI GATC 1 cut(s) 106
DpnII GATC 1 cut(s) 104
FaeI CATG 1 cut(s) 141
FaiI YATR 3 cut(s) 93, 139, 215
FatI CATG 1 cut(s) 137
FauI CCCGC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 142
Hin1II CATG 1 cut(s) 141
HpaII CCGG 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 43
HpyCH4III ACNGT 2 cut(s) 67, 116
HpyCH4V TGCA 3 cut(s) 4, 91, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
Hsp92II CATG 1 cut(s) 141
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
Kzo9I GATC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 51, 67, 155, 214
MalI GATC 1 cut(s) 106
MboI GATC 1 cut(s) 104
MboII GAAGA 1 cut(s) 15
MnlI CCTC 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 170
NaeI GCCGGC 1 cut(s) 143
NdeII GATC 1 cut(s) 104
NgoMIV GCCGGC 1 cut(s) 141
NlaIII CATG 1 cut(s) 141
NspI RCATGY 1 cut(s) 141
PaeI GCATGC 1 cut(s) 141
PdiI GCCGGC 1 cut(s) 143
PkrI GCNGC 1 cut(s) 31
RsaI GTAC 2 cut(s) 44, 178
RsaNI GTAC 2 cut(s) 43, 177
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 104
SetI ASST 2 cut(s) 86, 187
SphI GCATGC 1 cut(s) 141
SsiI CCGC 3 cut(s) 30, 99, 160
TaaI ACNGT 2 cut(s) 67, 116
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 32
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 195
TspRI CASTG 1 cut(s) 70
XceI RCATGY 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.