Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001559

Physical Location & Seq

Genomic Coordinates Reverse (-)

11322608 .. 11323543

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0127600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGGGAGGAGTGGTTTTGGGCTATTAGAGGAGGTGGAGGTGGAAATTTCGGAGTAGTGGTCGGATGGAAGATCAAATTGGTTCAAATTCCAAATAAGGTGACAGGGTTCAATATCCCCAGGATCCTTGAAAACAATGCAACCAAATTGGTTTACAGGCGGCAACAGATTGCACACCAATTACATGAAGACTTGTTCATAAGAATCATCATGTCTGTGGTGAAAGATTCTAAAGGAGGAAGAACAATCCAGGCTAATTTTGATGCATTGTTTCTTGGAATAATTGATCAATTAGTCCCACTGATTGGCTCAAGCTTTCCTGAGTTGGGATTGAAGACTGAGGAATGCAAGGAAATGAGTTGGATTCAGTCCATTTTGATCAGTGAAGGTGGAAACCCAAATCAGCCTTTGGAGCTTTTATTAGACCGAAACCATGTTAAAAAAGGGTTCTTCAAAGCCAAATCTGATTTCGTAACTGAACACATTTCAGAGAGTGCTTTAGAATCCATATGGAAGGTAATGCTTGAAGGTGAAGAAACAGGTACCATGACTTGGGAGCCTTATGGTGGAAAGATGAGCGAGATTTCAGAGTCTTCAATTCCATTTCCACACAGAGTTGGGGTGTTGTACAATGTTGAGTACTTCAGCATCTGGCAAGAAGGAGGAGCTTTGGTTGAGAAGAAGAGATTGGAATGGATTGATAGAGTTTACAACTTCATGGGTAAATTTGTAACCAAAAACCCCAGAACTGCATATGTCAATTATCGGGAATGTCCAAGAAATGTAAATTGGACTTGCCTAGAATCCAAGGTTTGGGGTGAGAAGTACTTCAAGGGAAATTTTGAGGAATTGGCAAGGATCAAAGGTGAGGTTGATTGTGAAAACTTCTTCAAGAATGAGCAAAGCATTGTACCATTTTTTTTCTTTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

Nop Prp31_C

Protein Analysis

311

Amino Acids

35.81

Weight (kDa)

6.06

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BBE	PF08031	252 - 303	1.2e-13	Berberine and berberine like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001559)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60170 AT1G70400 AT1G70400 AT1G70400
fragaria_vesca	FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710 FvH4_1g17710
malus_domestica	MD02G1186000.v1.1 MD15G1297200.v1.1 MD15G1297400.v1.1
prunus_persica	Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.5G061600_v2.0.a1 Prupe.6G220500_v2.0.a1 Prupe.6G220500_v2.0.a1
pyrus_communis	pycom02g15100
rosa_chinensis	RchiOBHm_Chr1g0315331 RchiOBHm_Chr2g0108041 RchiOBHm_Chr2g0132891 RchiOBHm_Chr2g0140521 RchiOBHm_Chr2g0166471 RchiOBHm_Chr7g0232501
rosa_laevigata	RLG00000017635 RLG00000027115
rosa_multiflora	Rmu_sc0001484.1_g000012
rosa_roxburghii	Rroxscaffold_1G00053870 Rroxscaffold_1G00053900 Rroxscaffold_2G00135680 Rroxscaffold_2G00144490
rosa_rugosa	Rorug02G0149800 Rorug02G0633300 Rorug03G0334600 Rorug05G0127600
rosa_samantha	Rh1AG025700 Rh1BG171200 Rh2AG199000 Rh2BG211800 Rh2CG203600 Rh2CG295600 Rh2CG572100 Rh2DG206600 Rh2DG576900 Rh4DG178400
rosa_wichuraiana	Rw2G015790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AccB7I	CCANNNNNTGG	3 cut(s)	305, 552, 813
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	3 cut(s)	118, 131, 866
AcsI	RAATTY	4 cut(s)	46, 87, 725, 838
AcuI	CTGAAG	1 cut(s)	628
AfaI	GTAC	5 cut(s)	544, 629, 641, 827, 912
AfiI	CCNNNNNNNGG	5 cut(s)	305, 326, 552, 566, 813
AgsI	TTSAA	9 cut(s)	86, 112, 131, 334, 454, 527, 597, 832, 892
AjnI	CCWGG	2 cut(s)	119, 249
AjuI	GAANNNNNNNTTGG	8 cut(s)	62, 94, 452, 484, 671, 703, 772, 804
AluBI	AGCT	3 cut(s)	315, 415, 668
AluI	AGCT	3 cut(s)	315, 415, 668
Alw26I	GTCTC	1 cut(s)	923
AlwI	GGATC	3 cut(s)	118, 131, 866
AlwNI	CAGNNNCTG	1 cut(s)	651
ApoI	RAATTY	4 cut(s)	46, 87, 725, 838
Asp700I	GAANNNNTTC	1 cut(s)	827
Asp718I	GGTACC	1 cut(s)	542
AsuHPI	GGTGA	5 cut(s)	112, 232, 542, 830, 878
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	542
BbsI	GAAGAC	3 cut(s)	195, 341, 585
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	121, 251
BclI	TGATCA	2 cut(s)	286, 378
BcoDI	GTCTC	1 cut(s)	923
BfaI	CTAG	1 cut(s)	800
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
BmcAI	AGTACT	2 cut(s)	641, 827
Bme1390I	CCNGG	2 cut(s)	121, 251
BmiI	GGNNCC	3 cut(s)	125, 544, 558
BmrFI	CCNGG	2 cut(s)	121, 251
BmsI	GCATC	2 cut(s)	253, 657
BpiI	GAAGAC	3 cut(s)	195, 341, 585
BpuEI	CTTGAG	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	119, 807
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 45, 75, 657, 687
Bsc4I	CCNNNNNNNGG	5 cut(s)	305, 326, 552, 566, 813
BseBI	CCWGG	2 cut(s)	121, 251
BseDI	CCNNGG	2 cut(s)	119, 807
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	5 cut(s)	305, 326, 552, 566, 813
BseMII	CTCAG	2 cut(s)	312, 330
BseRI	GAGGAG	3 cut(s)	23, 45, 678
BshNI	GGYRCC	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	5 cut(s)	305, 326, 552, 566, 813
BsmAI	GTCTC	1 cut(s)	923
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	350
Bsp1407I	TGTACA	1 cut(s)	627
Bsp143I	GATC	5 cut(s)	72, 123, 286, 378, 858
BspACI	CCGC	1 cut(s)	160
BspCNI	CTCAG	2 cut(s)	313, 331
BspLI	GGNNCC	3 cut(s)	125, 544, 558
BspPI	GGATC	3 cut(s)	118, 131, 866
BspT107I	GGYRCC	1 cut(s)	542
BsrGI	TGTACA	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	119, 807
BssMI	GATC	5 cut(s)	72, 123, 286, 378, 858
BssT1I	CCWWGG	1 cut(s)	807
Bst2UI	CCWGG	2 cut(s)	121, 251
Bst6I	CTCTTC	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	627
BstDEI	CTNAG	2 cut(s)	321, 339
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	5 cut(s)	75, 126, 289, 381, 861
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	5 cut(s)	72, 123, 286, 378, 858
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	121, 251
BstSCI	CCNGG	2 cut(s)	119, 249
BstV2I	GAAGAC	3 cut(s)	195, 341, 585
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	299, 388
CaiI	CAGNNNCTG	1 cut(s)	651
Csp6I	GTAC	5 cut(s)	543, 628, 640, 826, 911
CviAII	CATG	5 cut(s)	185, 211, 434, 547, 718
CviJI	RGCY	9 cut(s)	23, 254, 309, 315, 406, 415, 458, 559, 668
CviKI_1	RGCY	9 cut(s)	23, 254, 309, 315, 406, 415, 458, 559, 668
CviQI	GTAC	5 cut(s)	543, 628, 640, 826, 911
DdeI	CTNAG	2 cut(s)	321, 339
DpnI	GATC	5 cut(s)	74, 125, 288, 380, 860
DpnII	GATC	5 cut(s)	72, 123, 286, 378, 858
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco130I	CCWWGG	1 cut(s)	807
Eco57I	CTGAAG	1 cut(s)	628
EcoRII	CCWGG	2 cut(s)	119, 249
EcoT14I	CCWWGG	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	268
ErhI	CCWWGG	1 cut(s)	807
FaeI	CATG	5 cut(s)	188, 214, 437, 550, 721
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	5 cut(s)	184, 210, 433, 546, 717
FauNDI	CATATG	2 cut(s)	509, 754
FbaI	TGATCA	2 cut(s)	286, 378
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	161
FspBI	CTAG	1 cut(s)	800
GluI	GCNGC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	188, 214, 437, 550, 721
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	6 cut(s)	204, 227, 364, 503, 590, 803
HphI	GGTGA	5 cut(s)	112, 232, 542, 830, 878
Hpy166II	GTNNAC	2 cut(s)	154, 709
Hpy188I	TCNGA	5 cut(s)	53, 65, 466, 490, 589
Hpy188III	TCNNGA	3 cut(s)	320, 767, 892
Hpy8I	GTNNAC	2 cut(s)	154, 709
HpyAV	CCTTC	4 cut(s)	380, 508, 521, 653
HpyCH4V	TGCA	5 cut(s)	140, 173, 266, 348, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	321, 339
Hsp92II	CATG	5 cut(s)	188, 214, 437, 550, 721
KpnI	GGTACC	1 cut(s)	546
Ksp22I	TGATCA	2 cut(s)	286, 378
Kzo9I	GATC	5 cut(s)	72, 123, 286, 378, 858
LmnI	GCTCC	3 cut(s)	412, 556, 665
LweI	GCATC	2 cut(s)	253, 657
MaeI	CTAG	1 cut(s)	800
MaeIII	GTNAC	3 cut(s)	100, 472, 730
MalI	GATC	5 cut(s)	74, 125, 288, 380, 860
MboI	GATC	5 cut(s)	72, 123, 286, 378, 858
MflI	RGATCY	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	2 cut(s)	43, 341
MnlI	CCTC	8 cut(s)	23, 26, 32, 230, 334, 656, 838, 862
Mph1103I	ATGCAT	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	827
MseI	TTAA	1 cut(s)	438
MslI	CAYNNNNRTG	1 cut(s)	215
MspR9I	CCNGG	2 cut(s)	121, 251
Mva1269I	GAATGC	1 cut(s)	350
MvaI	CCWGG	2 cut(s)	121, 251
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeI	CATATG	2 cut(s)	509, 754
NdeII	GATC	5 cut(s)	72, 123, 286, 378, 858
NlaIII	CATG	5 cut(s)	188, 214, 437, 550, 721
NlaIV	GGNNCC	3 cut(s)	125, 544, 558
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	268
PctI	GAATGC	1 cut(s)	350
PdmI	GAANNNNTTC	1 cut(s)	827
PfeI	GAWTC	5 cut(s)	204, 227, 364, 503, 803
PflMI	CCANNNNNTGG	3 cut(s)	305, 552, 813
PkrI	GCNGC	1 cut(s)	162
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	119, 249
PspGI	CCWGG	2 cut(s)	119, 249
PspN4I	GGNNCC	3 cut(s)	125, 544, 558
PstNI	CAGNNNCTG	1 cut(s)	651
PsuI	RGATCY	1 cut(s)	123
RsaI	GTAC	5 cut(s)	544, 629, 641, 827, 912
RsaNI	GTAC	5 cut(s)	543, 628, 640, 826, 911
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	5 cut(s)	72, 123, 286, 378, 858
ScaI	AGTACT	2 cut(s)	641, 827
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	2 cut(s)	121, 251
SfaNI	GCATC	2 cut(s)	253, 657
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	1 cut(s)	800
StyD4I	CCNGG	2 cut(s)	119, 249
StyI	CCWWGG	1 cut(s)	807
TaqII	GACCGA	1 cut(s)	441
TatI	WGTACW	3 cut(s)	627, 639, 825
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	5 cut(s)	204, 227, 364, 503, 803
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	2 cut(s)	306, 388
TseFI	GTSAC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	187, 201, 706
TspRI	CASTG	2 cut(s)	306, 388
Van91I	CCANNNNNTGG	3 cut(s)	305, 552, 813
XapI	RAATTY	4 cut(s)	46, 87, 725, 838
XmnI	GAANNNNTTC	1 cut(s)	827
XspI	CTAG	1 cut(s)	800
ZrmI	AGTACT	2 cut(s)	641, 827
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.