Rorug03G0334600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001559
Physical Location & Seq
Reverse (-)
39276230 .. 39277370
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0334600.1

Sequence Viewer

Length: 396 bp
ATGTTTGGCTACTGGGGAAAGTCTCATCATCACAAGAATGATTCATTGCAGCGTGAGGTGAAGTTCAACGAGCTAAAGGCTGCAATTGGACCACTATCGGGCCGTATTTTGCAGTTCTGTACTGATGCGTGCTTTAGGAGCCTGAAGTTGCAGTTGAAGGTGAGACTGGAAAAGTTTATAGAGCAAATTTTTGTGACCGTCATGGGAGAACGTACTGTTCTGATATTGAGACCAGCAATGCAGATTGATTTCTTGAGTAGCCGAGATTCAACTGGAGGCTTCAATTTCATTCATGGATTGACAGATCTAATTGCTCATGCTACTGCTACTGCTACTGCTCATGCCACTACTACCGTTACTGCTCCTGAAGAGTGCAGTAGAAGAACACGAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.75

Weight (kDa)

9.45

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 186
AcuI CTGAAG 2 cut(s) 164, 387
AfaI GTAC 2 cut(s) 121, 214
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 4 cut(s) 67, 157, 270, 283
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 27, 157, 223
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 49, 80
ApoI RAATTY 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 89, 100
AsuHPI GGTGA 2 cut(s) 70, 172
AvaII GGWCC 1 cut(s) 89
BauI CACGAG 1 cut(s) 387
BbvI GCAGC 2 cut(s) 61, 67
BceAI ACGGC 1 cut(s) 87
BcoDI GTCTC 3 cut(s) 27, 157, 223
BglII AGATCT 1 cut(s) 304
BisI GCNGC 2 cut(s) 50, 81
BlsI GCNGC 2 cut(s) 51, 82
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 100
BmiI GGNNCC 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 1 cut(s) 115
BmuI ACTGGG 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse1I ACTGG 3 cut(s) 17, 171, 277
Bse3DI GCAATG 2 cut(s) 44, 243
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 2 cut(s) 44, 243
BseNI ACTGG 3 cut(s) 17, 171, 277
BseXI GCAGC 2 cut(s) 61, 67
BsgI GTGCAG 1 cut(s) 394
BshFI GGCC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 3 cut(s) 27, 157, 223
BsnI GGCC 1 cut(s) 102
Bso31I GGTCTC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 304
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 223
BsrDI GCAATG 2 cut(s) 44, 243
BsrI ACTGG 3 cut(s) 17, 171, 277
BssMI GATC 1 cut(s) 304
BssSI CACGAG 1 cut(s) 387
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 3 cut(s) 199, 217, 355
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 307
BstMAI GTCTC 3 cut(s) 27, 157, 223
BstMBI GATC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstV1I GCAGC 2 cut(s) 61, 67
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuRI GGCC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 89, 100
Csp6I GTAC 2 cut(s) 120, 213
CviAII CATG 4 cut(s) 202, 293, 317, 341
CviJI RGCY 7 cut(s) 9, 73, 80, 102, 141, 261, 279
CviKI_1 RGCY 7 cut(s) 9, 73, 80, 102, 141, 261, 279
CviQI GTAC 2 cut(s) 120, 213
DpnI GATC 1 cut(s) 306
DpnII GATC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 2 cut(s) 164, 387
FaeI CATG 4 cut(s) 205, 296, 320, 344
FaiI YATR 6 cut(s) 179, 203, 294, 318, 342, 394
FatI CATG 4 cut(s) 201, 292, 316, 340
Fnu4HI GCNGC 2 cut(s) 50, 81
Fsp4HI GCNGC 2 cut(s) 50, 81
GluI GCNGC 2 cut(s) 50, 81
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 102
Hin1II CATG 4 cut(s) 205, 296, 320, 344
HinfI GANTC 2 cut(s) 41, 266
HphI GGTGA 2 cut(s) 70, 172
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 2 cut(s) 253, 365
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 3 cut(s) 199, 217, 355
HpyCH4IV ACGT 1 cut(s) 211
HpyCH4V TGCA 6 cut(s) 49, 83, 112, 151, 241, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 211
Hsp92II CATG 4 cut(s) 205, 296, 320, 344
Kzo9I GATC 1 cut(s) 304
LmnI GCTCC 2 cut(s) 138, 367
LpnPI CCDG 5 cut(s) 152, 155, 246, 258, 378
Lsp1109I GCAGC 2 cut(s) 61, 67
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 211
MaeIII GTNAC 2 cut(s) 193, 355
MalI GATC 1 cut(s) 306
MboI GATC 1 cut(s) 304
MboII GAAGA 2 cut(s) 380, 393
MfeI CAATTG 1 cut(s) 84
MflI RGATCY 1 cut(s) 304
MluCI AATT 4 cut(s) 84, 186, 283, 309
MnlI CCTC 2 cut(s) 49, 269
MslI CAYNNNNRTG 2 cut(s) 36, 391
MunI CAATTG 1 cut(s) 84
MwoI GCNNNNNNNGC 1 cut(s) 138
NdeII GATC 1 cut(s) 304
NlaIII CATG 4 cut(s) 205, 296, 320, 344
NlaIV GGNNCC 1 cut(s) 140
NmeAIII GCCGAG 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 193
PfeI GAWTC 2 cut(s) 41, 266
PkrI GCNGC 2 cut(s) 51, 82
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 2 cut(s) 89, 100
PsuI RGATCY 1 cut(s) 304
RsaI GTAC 2 cut(s) 121, 214
RsaNI GTAC 2 cut(s) 120, 213
RseI CAYNNNNRTG 2 cut(s) 36, 391
SatI GCNGC 2 cut(s) 50, 81
Sau3AI GATC 1 cut(s) 304
Sau96I GGNCC 2 cut(s) 89, 100
SetI ASST 4 cut(s) 60, 75, 162, 214
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 36, 391
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 4 cut(s) 84, 186, 283, 309
TaaI ACNGT 3 cut(s) 199, 217, 355
TaiI ACGT 1 cut(s) 214
TasI AATT 4 cut(s) 84, 186, 283, 309
TatI WGTACW 1 cut(s) 119
TfiI GAWTC 2 cut(s) 41, 266
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 2 cut(s) 49, 80
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 33, 277, 281
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.