Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Reverse (-)

27475060 .. 27475962

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G73040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGATCAACAACAACAAGGTGATAAGAATCTGACAGTGTTCGTAGGACCCTGGGGAGGAAATGGAGGAACCACTTGGGATGATGGGATTTATGATGGTGTCCGTGAGATCAGACTTGTTTATGACCATTGCATTGACTCCATCTCGGTGATCTACGATAAGAATGGTAAACCCGCAAAGTCAGAGAAGCATGGAGGTGTGGGAGGCAACAAAACATCAGAGATAAAGCTGCAATACCCAGAGGAGTATCTGACTGGCGTGAGTGGCTACTACTGTCCAATGGTTAACAGTGGCACTCCTGTAATCAGATCAATGACCTTCAAGAGCAATAAACAAGTGTATGGACCTTATGGAGTTGAACAGGGAACACCCTTCACTTTCTCAGTCAATGGGGGACGCATTGTTGGTATGAACGGTAGGAGTGGCTGGTACCTTGACTCCATCGGCTTCCATCTATCACGCCCTAAATCAACCAAGATGATCAACAAGCTCCGAAAGAAGATTCACTGGCTCACAAGGATAGTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

176

Amino Acids

19.56

Weight (kDa)

9.37

Isoelectric Point (pI)

37.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	15 - 151	1e-44	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	429
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	2 cut(s)	322, 359
AjnI	CCWGG	1 cut(s)	50
AluBI	AGCT	2 cut(s)	229, 490
AluI	AGCT	2 cut(s)	229, 490
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	229
Asp718I	GGTACC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	47, 344
AsuHPI	GGTGA	2 cut(s)	32, 160
AvaII	GGWCC	2 cut(s)	47, 344
BanI	GGYRCC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	5 cut(s)	77, 89, 149, 449, 459
BciT130I	CCWGG	1 cut(s)	52
BclI	TGATCA	1 cut(s)	480
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	2 cut(s)	47, 344
BmgT120I	GGNCC	2 cut(s)	47, 344
BmiI	GGNNCC	3 cut(s)	49, 70, 431
BmrFI	CCNGG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	50, 51
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	2 cut(s)	259, 512
Bse3DI	GCAATG	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	52
BseDI	CCNNGG	2 cut(s)	50, 51
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	2 cut(s)	259, 512
BseRI	GAGGAG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	4, 108, 150, 308, 480
BspACI	CCGC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	49, 70, 431
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	429
BsrDI	GCAATG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	259, 512
BssECI	CCNNGG	2 cut(s)	50, 51
BssMI	GATC	5 cut(s)	4, 108, 150, 308, 480
Bst2UI	CCWGG	1 cut(s)	52
Bst4CI	ACNGT	4 cut(s)	37, 275, 290, 416
BstDEI	CTNAG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	5 cut(s)	7, 111, 153, 311, 483
BstMBI	GATC	5 cut(s)	4, 108, 150, 308, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	42, 295, 505
Cfr13I	GGNCC	2 cut(s)	47, 344
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	2 cut(s)	191, 528
CviJI	RGCY	6 cut(s)	229, 267, 426, 447, 490, 511
CviKI_1	RGCY	6 cut(s)	229, 267, 426, 447, 490, 511
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	382
DpnI	GATC	5 cut(s)	6, 110, 152, 310, 482
DpnII	GATC	5 cut(s)	4, 108, 150, 308, 480
Eco47I	GGWCC	2 cut(s)	47, 344
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	50
FaeI	CATG	2 cut(s)	194, 531
FaiI	YATR	7 cut(s)	93, 123, 192, 342, 351, 410, 529
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	2 cut(s)	190, 527
FauI	CCCGC	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
HgaI	GACGC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	194, 531
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	28, 137, 437, 502
HpaI	GTTAAC	1 cut(s)	286
HphI	GGTGA	2 cut(s)	32, 160
Hpy166II	GTNNAC	2 cut(s)	170, 286
Hpy188I	TCNGA	7 cut(s)	33, 113, 184, 220, 252, 308, 494
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	170, 286
HpyAV	CCTTC	2 cut(s)	328, 382
HpyCH4III	ACNGT	4 cut(s)	37, 275, 290, 416
HpyCH4V	TGCA	2 cut(s)	132, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	382
Hsp92II	CATG	2 cut(s)	194, 531
KpnI	GGTACC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	480
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	4, 108, 150, 308, 480
LmnI	GCTCC	1 cut(s)	495
LpnPI	CCDG	8 cut(s)	37, 64, 240, 252, 312, 347, 412, 493
Lsp1109I	GCAGC	1 cut(s)	216
MalI	GATC	5 cut(s)	6, 110, 152, 310, 482
MboI	GATC	5 cut(s)	4, 108, 150, 308, 480
MboII	GAAGA	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	131, 431
MnlI	CCTC	5 cut(s)	50, 59, 188, 197, 235
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	146, 195
MspR9I	CCNGG	1 cut(s)	52
MvaI	CCWGG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	264
NdeII	GATC	5 cut(s)	4, 108, 150, 308, 480
NlaIII	CATG	2 cut(s)	194, 531
NlaIV	GGNNCC	3 cut(s)	49, 70, 431
PasI	CCCWGGG	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	28, 502
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	2 cut(s)	131, 431
PpsI	GAGTC	2 cut(s)	131, 431
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	49, 70, 431
PspPI	GGNCC	2 cut(s)	47, 344
PspPPI	RGGWCCY	1 cut(s)	47
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	146, 195
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	5 cut(s)	4, 108, 150, 308, 480
Sau96I	GGNCC	2 cut(s)	47, 344
SchI	GAGTC	2 cut(s)	131, 431
ScrFI	CCNGG	1 cut(s)	52
SetI	ASST	7 cut(s)	22, 199, 231, 320, 349, 435, 492
SinI	GGWCC	2 cut(s)	47, 344
SmiMI	CAYNNNNRTG	2 cut(s)	146, 195
SsiI	CCGC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	50
TaaI	ACNGT	4 cut(s)	37, 275, 290, 416
TfiI	GAWTC	2 cut(s)	28, 502
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	3 cut(s)	42, 295, 512
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	1 cut(s)	92
TspRI	CASTG	3 cut(s)	42, 295, 512
VpaK11BI	GGWCC	2 cut(s)	47, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.