RLG00000019429

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001575
Physical Location & Seq
Reverse (-)
51956792 .. 51958490
1699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019429

Sequence Viewer

Length: 1161 bp
ATGTTCATCACCCCCACCCTCAGCATCTCTTGTATAACTTGCATGCGAGGAGAGGAAGGTTCTAGCGTTAATGACCTTTCAGGCCGCGGTGGTGGGAAGAACAACAGCTCAGTACGGACGTCGGAACTCTACGGAGGGTTAACTAGTGGAAGTCCTTGGGATGATGGAATCTATGATGGCGTCAGAGAAATCACACTGGTTTATGGCCAGTGCATCGACTCCATAAGTGTGGCATATGATAAAGATGGTCAGTTTGTTAAACCCGGAAAGCATGGAGGTGTCGGGGGCGGTCACCTCCATAAGCCCCTAACTACTGTCGAGATGAAATTGGAGTATCCAGAAGAGTTCCTAGTTGGCGTCAGTGGATACTCTTGTTCGGTACCCGGGATGGCACCAGAAGTGTTGCGATCACTCAAACTTGAGAGCAATAGAAGGTCATTTGGACCGTTTGGAGTTTTAGTAGGCAATCCCTTTAGTTTCAGAGTACAAGATGGAGAGCAAATTGTTGGCTTGAAGGGCAGAAATGGTTGGTACCTAGATGCAATTGGGTTTCATATATCCCCTGCTCCCAAGAGTAAGCTCTTACGGAGAGTCCAACAGAGCTCGATACCATCAGAACTTTATGGAGGAGTGGCCAGCGGAGGTCCTTGGGATGACGGAGTCTACGATGGCATAAGAGAAATAACACTTGTTTACGGCCAATGCATCGACTCCATATGTGTGGCATATGATATAAATGGTAAGCTTGTTAAAACCGGAAAACATGGAGGTTATGGGGGCAATCACCTCCACAAAAACCTAAGTACCGTTGAGATAACGTTGGAATACCCAAGTGAGTTTCTAGTTGGTGTCAGTGGATACTCTTCTTCTGTACCCGGGATGGCGCCAGAGGTGTTACGCTCACTCAAATTTGAGACCAACAAAATGTCATATGGACCATTTGGAGTTGAAACAGGCACACCATTTACATTCAGAGTAAAAGATGGAGAGAAAATTGTTGGTTTGAAGGGAAGAAATGGTTGGTACCTAGATGCAATCGGGTTTCATTATCCTATGCTCACAAGAGAAAACGCTTTCAGATGGTTCGGAAGCATCTTTCCAAAGCTTATGAGTCCTTGGTTCAAATCACTAAACCTCTTACAGATGTTGAGTGCACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

387

Amino Acids

42.0

Weight (kDa)

7.63

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 43 - 185 6e-34 Jacalin-like lectin domain
Jacalin PF01419 207 - 349 5.1e-37 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
Acc65I GGTACC 3 cut(s) 379, 531, 1023
AccB1I GGYRCC 5 cut(s) 379, 391, 531, 883, 1023
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 87
AciI CCGC 4 cut(s) 85, 87, 288, 639
AclI AACGTT 1 cut(s) 818
AcoI YGGCCR 3 cut(s) 205, 633, 697
AcsI RAATTY 1 cut(s) 908
AcyI GRCGYC 4 cut(s) 119, 180, 357, 884
AfaI GTAC 7 cut(s) 114, 381, 486, 533, 805, 873, 1025
AgsI TTSAA 4 cut(s) 514, 950, 1006, 1123
AhlI ACTAGT 1 cut(s) 143
AjuI GAANNNNNNNTTGG 2 cut(s) 1003, 1035
AluBI AGCT 5 cut(s) 108, 580, 603, 745, 1105
AluI AGCT 5 cut(s) 108, 580, 603, 745, 1105
Alw21I GWGCWC 2 cut(s) 605, 1156
Alw26I GTCTC 1 cut(s) 908
Alw44I GTGCAC 1 cut(s) 1152
Ama87I CYCGRG 2 cut(s) 383, 875
AoxI GGCC 4 cut(s) 82, 205, 633, 697
ApaLI GTGCAC 1 cut(s) 1152
ApoI RAATTY 1 cut(s) 908
Asp718I GGTACC 3 cut(s) 379, 531, 1023
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 3 cut(s) 443, 644, 935
AsuC2I CCSGG 5 cut(s) 264, 384, 385, 876, 877
AsuHPI GGTGA 2 cut(s) 284, 776
AvaI CYCGRG 2 cut(s) 383, 875
AvaII GGWCC 3 cut(s) 443, 644, 935
BaeGI GKGCMC 1 cut(s) 1156
BaeI ACNNNNGTAYC 4 cut(s) 358, 391, 787, 820
BalI TGGCCA 2 cut(s) 207, 635
BanI GGYRCC 5 cut(s) 379, 391, 531, 883, 1023
BanII GRGCYC 1 cut(s) 605
Bbv12I GWGCWC 2 cut(s) 605, 1156
BbvCI CCTCAGC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 712
BciVI GTATCC 3 cut(s) 345, 359, 851
BcnI CCSGG 5 cut(s) 264, 384, 385, 876, 877
BcoDI GTCTC 1 cut(s) 908
BcuI ACTAGT 1 cut(s) 143
BfaI CTAG 6 cut(s) 63, 144, 350, 536, 842, 1028
BfoI RGCGCY 1 cut(s) 887
BfuI GTATCC 3 cut(s) 345, 359, 851
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 5 cut(s) 264, 384, 385, 876, 877
Bme18I GGWCC 3 cut(s) 443, 644, 935
BmeT110I CYCGRG 2 cut(s) 383, 875
BmgT120I GGNCC 3 cut(s) 443, 644, 935
BmiI GGNNCC 5 cut(s) 381, 393, 533, 885, 1025
BmrFI CCNGG 5 cut(s) 264, 384, 385, 876, 877
BmsI GCATC 6 cut(s) 33, 222, 529, 714, 1021, 1101
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 5 cut(s) 264, 384, 385, 876, 877
BsaHI GRCGYC 4 cut(s) 119, 180, 357, 884
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 6 cut(s) 85, 155, 383, 647, 875, 1115
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bse1I ACTGG 2 cut(s) 201, 208
BseDI CCNNGG 6 cut(s) 85, 155, 383, 647, 875, 1115
BseGI GGATG 4 cut(s) 166, 393, 658, 885
BseMII CTCAG 2 cut(s) 34, 123
BseNI ACTGG 2 cut(s) 201, 208
BseRI GAGGAG 2 cut(s) 63, 642
BseSI GKGCMC 1 cut(s) 1156
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 84, 207, 635, 699
BshNI GGYRCC 5 cut(s) 379, 391, 531, 883, 1023
BsiHKAI GWGCWC 2 cut(s) 605, 1156
BsiHKCI CYCGRG 2 cut(s) 383, 875
BsiSI CCGG 4 cut(s) 264, 384, 756, 876
BsmAI GTCTC 1 cut(s) 908
BsnI GGCC 4 cut(s) 84, 207, 635, 699
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 2 cut(s) 383, 875
Bsp1286I GDGCHC 2 cut(s) 605, 1156
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 4 cut(s) 85, 87, 288, 639
BspANI GGCC 4 cut(s) 84, 207, 635, 699
BspCNI CTCAG 2 cut(s) 33, 122
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 5 cut(s) 381, 393, 533, 885, 1025
BspT107I GGYRCC 5 cut(s) 379, 391, 531, 883, 1023
BspTNI GGTCTC 1 cut(s) 908
BsrI ACTGG 2 cut(s) 201, 208
BssECI CCNNGG 6 cut(s) 85, 155, 383, 647, 875, 1115
BssMI GATC 1 cut(s) 407
BssNI GRCGYC 4 cut(s) 119, 180, 357, 884
BssT1I CCWWGG 3 cut(s) 155, 647, 1115
Bst4CI ACNGT 3 cut(s) 316, 447, 808
Bst6I CTCTTC 2 cut(s) 336, 868
BstACI GRCGYC 4 cut(s) 119, 180, 357, 884
BstC8I GCNNGC 2 cut(s) 44, 637
BstDEI CTNAG 3 cut(s) 20, 109, 800
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 4 cut(s) 166, 393, 658, 885
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 887
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 1 cut(s) 410
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 1 cut(s) 407
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 5 cut(s) 262, 382, 383, 874, 875
BstSLI GKGCMC 1 cut(s) 1156
BstUI CGCG 1 cut(s) 87
BstXI CCANNNNNNTGG 2 cut(s) 229, 721
BsuI GTATCC 3 cut(s) 345, 359, 851
BsuRI GGCC 4 cut(s) 84, 207, 635, 699
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 4 cut(s) 166, 393, 658, 885
BtsIMutI CAGTG 4 cut(s) 194, 215, 367, 859
Cac8I GCNNGC 2 cut(s) 44, 637
CfoI GCGC 1 cut(s) 886
Cfr13I GGNCC 3 cut(s) 443, 644, 935
Cfr42I CCGCGG 1 cut(s) 88
Cfr9I CCCGGG 2 cut(s) 383, 875
CseI GACGC 2 cut(s) 169, 346
Csp6I GTAC 7 cut(s) 113, 380, 485, 532, 804, 872, 1024
CviAII CATG 3 cut(s) 43, 272, 764
CviQI GTAC 7 cut(s) 113, 380, 485, 532, 804, 872, 1024
DdeI CTNAG 3 cut(s) 20, 109, 800
DinI GGCGCC 1 cut(s) 885
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
EaeI YGGCCR 3 cut(s) 205, 633, 697
Eam1104I CTCTTC 2 cut(s) 336, 868
EarI CTCTTC 2 cut(s) 336, 868
Ecl136II GAGCTC 1 cut(s) 603
Eco130I CCWWGG 3 cut(s) 155, 647, 1115
Eco24I GRGCYC 1 cut(s) 605
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 3 cut(s) 443, 644, 935
Eco53kI GAGCTC 1 cut(s) 603
Eco88I CYCGRG 2 cut(s) 383, 875
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 290
EcoT14I CCWWGG 3 cut(s) 155, 647, 1115
EcoT22I ATGCAT 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 605
EgeI GGCGCC 1 cut(s) 885
EheI GGCGCC 1 cut(s) 885
ErhI CCWWGG 3 cut(s) 155, 647, 1115
FaeI CATG 3 cut(s) 46, 275, 767
FatI CATG 3 cut(s) 42, 271, 763
FauNDI CATATG 4 cut(s) 235, 716, 727, 931
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 4 cut(s) 173, 400, 665, 892
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 6 cut(s) 63, 144, 350, 536, 842, 1028
GlaI GCGC 1 cut(s) 885
GluI GCNGC 1 cut(s) 85
HaeII RGCGCY 1 cut(s) 887
HaeIII GGCC 4 cut(s) 84, 207, 635, 699
HapII CCGG 4 cut(s) 264, 384, 756, 876
HgaI GACGC 2 cut(s) 169, 346
HhaI GCGC 1 cut(s) 886
Hin1I GRCGYC 4 cut(s) 119, 180, 357, 884
Hin1II CATG 3 cut(s) 46, 275, 767
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 743, 1103
HinfI GANTC 6 cut(s) 168, 218, 591, 660, 710, 1111
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 4 cut(s) 264, 384, 756, 876
HphI GGTGA 2 cut(s) 284, 776
Hpy166II GTNNAC 4 cut(s) 141, 664, 694, 1154
Hpy188I TCNGA 7 cut(s) 124, 185, 482, 616, 974, 1079, 1088
Hpy188III TCNNGA 2 cut(s) 319, 338
Hpy8I GTNNAC 4 cut(s) 141, 664, 694, 1154
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 4 cut(s) 50, 426, 508, 1000
HpyCH4III ACNGT 3 cut(s) 316, 447, 808
HpyCH4IV ACGT 2 cut(s) 119, 818
HpyCH4V TGCA 6 cut(s) 42, 213, 542, 705, 1034, 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 3 cut(s) 20, 109, 800
HpySE526I ACGT 2 cut(s) 119, 818
Hsp92I GRCGYC 4 cut(s) 119, 180, 357, 884
Hsp92II CATG 3 cut(s) 46, 275, 767
HspAI GCGC 1 cut(s) 884
KasI GGCGCC 1 cut(s) 883
KpnI GGTACC 3 cut(s) 383, 535, 1027
KspAI GTTAAC 1 cut(s) 141
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 571
LweI GCATC 6 cut(s) 33, 222, 529, 714, 1021, 1101
MaeI CTAG 6 cut(s) 63, 144, 350, 536, 842, 1028
MaeII ACGT 2 cut(s) 119, 818
MaeIII GTNAC 2 cut(s) 290, 894
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 5 cut(s) 109, 353, 855, 858, 1023
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 2 cut(s) 605, 1156
MlsI TGGCCA 2 cut(s) 207, 635
MluCI AATT 5 cut(s) 326, 501, 543, 908, 993
MluNI TGGCCA 2 cut(s) 207, 635
Mly113I GGCGCC 1 cut(s) 884
MlyI GAGTC 5 cut(s) 212, 600, 669, 704, 1120
MmeI TCCRAC 3 cut(s) 102, 619, 801
Mox20I TGGCCA 2 cut(s) 207, 635
Mph1103I ATGCAT 1 cut(s) 707
MscI TGGCCA 2 cut(s) 207, 635
MseI TTAA 5 cut(s) 69, 140, 258, 750, 1159
MslI CAYNNNNRTG 3 cut(s) 227, 276, 719
Msp20I TGGCCA 2 cut(s) 207, 635
MspA1I CMGCKG 2 cut(s) 87, 639
MspI CCGG 4 cut(s) 264, 384, 756, 876
MspR9I CCNGG 5 cut(s) 264, 384, 385, 876, 877
MunI CAATTG 1 cut(s) 543
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 516
NarI GGCGCC 1 cut(s) 884
NciI CCSGG 5 cut(s) 264, 384, 385, 876, 877
NdeI CATATG 4 cut(s) 235, 716, 727, 931
NdeII GATC 1 cut(s) 407
NlaIII CATG 3 cut(s) 46, 275, 767
NlaIV GGNNCC 5 cut(s) 381, 393, 533, 885, 1025
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 1 cut(s) 46
PaeI GCATGC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PfeI GAWTC 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 5 cut(s) 212, 599, 668, 704, 1119
PluTI GGCGCC 1 cut(s) 887
PpsI GAGTC 5 cut(s) 212, 599, 668, 704, 1119
PpuMI RGGWCCY 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 605
Psp1406I AACGTT 1 cut(s) 818
Psp5II RGGWCCY 1 cut(s) 644
PspEI GGTNACC 1 cut(s) 290
PspN4I GGNNCC 5 cut(s) 381, 393, 533, 885, 1025
PspPI GGNCC 3 cut(s) 443, 644, 935
PspPPI RGGWCCY 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 7 cut(s) 114, 381, 486, 533, 805, 873, 1025
RsaNI GTAC 7 cut(s) 113, 380, 485, 532, 804, 872, 1024
RseI CAYNNNNRTG 3 cut(s) 227, 276, 719
SacI GAGCTC 1 cut(s) 605
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 5 cut(s) 69, 140, 258, 750, 1159
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 407
Sau96I GGNCC 3 cut(s) 443, 644, 935
SchI GAGTC 5 cut(s) 212, 600, 669, 704, 1120
ScrFI CCNGG 5 cut(s) 264, 384, 385, 876, 877
SduI GDGCHC 2 cut(s) 605, 1156
SfaNI GCATC 6 cut(s) 33, 222, 529, 714, 1021, 1101
SfoI GGCGCC 1 cut(s) 885
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 3 cut(s) 443, 644, 935
SmaI CCCGGG 2 cut(s) 385, 877
SmiMI CAYNNNNRTG 3 cut(s) 227, 276, 719
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SpeI ACTAGT 1 cut(s) 143
SphI GCATGC 1 cut(s) 46
Sse9I AATT 5 cut(s) 326, 501, 543, 908, 993
SsiI CCGC 4 cut(s) 85, 87, 288, 639
SspDI GGCGCC 1 cut(s) 883
SspMI CTAG 6 cut(s) 63, 144, 350, 536, 842, 1028
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 5 cut(s) 262, 382, 383, 874, 875
StyI CCWWGG 3 cut(s) 155, 647, 1115
TaaI ACNGT 3 cut(s) 316, 447, 808
TaiI ACGT 2 cut(s) 122, 821
TaqI TCGA 4 cut(s) 216, 318, 605, 708
TasI AATT 5 cut(s) 326, 501, 543, 908, 993
TatI WGTACW 1 cut(s) 484
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 5 cut(s) 69, 140, 258, 750, 1159
Tru9I TTAA 5 cut(s) 69, 140, 258, 750, 1159
TscAI CASTG 4 cut(s) 201, 215, 367, 859
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 338, 542, 1034
TspGWI ACGGA 4 cut(s) 130, 147, 601, 672
TspMI CCCGGG 2 cut(s) 383, 875
TspRI CASTG 4 cut(s) 201, 215, 367, 859
Tth111I GACNNNGTC 1 cut(s) 659
VneI GTGCAC 1 cut(s) 1152
VpaK11BI GGWCC 3 cut(s) 443, 644, 935
XapI RAATTY 1 cut(s) 908
XceI RCATGY 1 cut(s) 46
XmaI CCCGGG 2 cut(s) 383, 875
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 6 cut(s) 63, 144, 350, 536, 842, 1028
ZraI GACGTC 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.