Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Forward (+)

62890256 .. 62891002

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG423300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGCAGGGAGAGGAAGGTAGCAATAACGATCATGAATCGCATGGGAAGATAAGGCTCAACGGCTTTGTGCCGCAGGAACCTTACGGAGGAACCGGTGGAGATTTTTGGGATGATGGTATGAACGATGGCGTGAGAGAAATCACTCTCACTTCTGGTTCATGCATCTACTCAATTCATGTGGCGTATGATAAAGATGGTGAGCTTGTCAATGCTCATAAGCATGGAGGTAACCGGAGCAGCCGCACTGCTGAGGTCAGCTTCAACAAAACGATTTCTAATGTGCATATCAAGCTAGAGTATCCAGATGAGTTCCTAGTGAGTGTTAGTGGACACTATTCTAAGGCGCCCTACAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD Jacalin

Protein Analysis

119

Amino Acids

13.08

Weight (kDa)

5.36

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	27 - 115	5.8e-18	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AciI	CCGC	2 cut(s)	74, 244
AcyI	GRCGYC	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	3 cut(s)	205, 261, 295
AluI	AGCT	3 cut(s)	205, 261, 295
ApeKI	GCWGC	2 cut(s)	4, 240
AsiGI	ACCGGT	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	16, 252
BccI	CCATC	3 cut(s)	110, 122, 191
BceAI	ACGGC	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	312
BfaI	CTAG	2 cut(s)	296, 317
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	312
BisI	GCNGC	4 cut(s)	5, 74, 241, 244
BlsI	GCNGC	4 cut(s)	6, 75, 242, 245
BmiI	GGNNCC	3 cut(s)	81, 94, 348
BmsI	GCATC	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	347
BsaWI	WCCGGW	2 cut(s)	95, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	95
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	243
BseXI	GCAGC	2 cut(s)	16, 252
BshNI	GGYRCC	1 cut(s)	346
BshTI	ACCGGT	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	96, 235
BslI	CCNNNNNNNGG	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	74, 244
BspCNI	CTCAG	1 cut(s)	244
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	3 cut(s)	81, 94, 348
BspT107I	GGYRCC	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssMI	GATC	1 cut(s)	31
BssNI	GRCGYC	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	356
BstACI	GRCGYC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	252, 342
BstEII	GGTNACC	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstPI	GGTNACC	1 cut(s)	230
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	16, 252
BsuI	GTATCC	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	118
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	95
CspAI	ACCGGT	1 cut(s)	95
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	5 cut(s)	35, 44, 162, 179, 224
CviJI	RGCY	6 cut(s)	58, 66, 205, 243, 261, 295
CviKI_1	RGCY	6 cut(s)	58, 66, 205, 243, 261, 295
DdeI	CTNAG	2 cut(s)	252, 342
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoO65I	GGTNACC	1 cut(s)	230
EcoT22I	ATGCAT	1 cut(s)	167
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
FaeI	CATG	5 cut(s)	38, 47, 165, 182, 227
FaiI	YATR	9 cut(s)	36, 45, 122, 163, 180, 189, 219, 225, 288
FatI	CATG	5 cut(s)	34, 43, 161, 178, 223
Fnu4HI	GCNGC	4 cut(s)	5, 74, 241, 244
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	4 cut(s)	5, 74, 241, 244
FspBI	CTAG	2 cut(s)	296, 317
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	5, 74, 241, 244
HaeII	RGCGCY	1 cut(s)	350
HapII	CCGG	2 cut(s)	96, 235
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	5 cut(s)	38, 47, 165, 182, 227
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	2 cut(s)	96, 235
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188III	TCNNGA	2 cut(s)	35, 305
Hpy8I	GTNNAC	1 cut(s)	332
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	3 cut(s)	4, 165, 286
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	2 cut(s)	252, 342
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	5 cut(s)	38, 47, 165, 182, 227
HspAI	GCGC	1 cut(s)	347
KasI	GGCGCC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	237
LpnPI	CCDG	5 cut(s)	62, 109, 141, 248, 318
Lsp1109I	GCAGC	2 cut(s)	16, 252
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	296, 317
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	61
MluCI	AATT	1 cut(s)	174
Mly113I	GGCGCC	1 cut(s)	347
MnlI	CCTC	4 cut(s)	7, 83, 221, 247
Mph1103I	ATGCAT	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	222
MspI	CCGG	2 cut(s)	96, 235
MwoI	GCNNNNNNNGC	1 cut(s)	292
NarI	GGCGCC	1 cut(s)	347
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	5 cut(s)	38, 47, 165, 182, 227
NlaIV	GGNNCC	3 cut(s)	81, 94, 348
NsiI	ATGCAT	1 cut(s)	167
PagI	TCATGA	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	38
PinAI	ACCGGT	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	6, 75, 242, 245
PluTI	GGCGCC	1 cut(s)	350
PspEI	GGTNACC	1 cut(s)	230
PspN4I	GGNNCC	3 cut(s)	81, 94, 348
RseI	CAYNNNNRTG	1 cut(s)	222
SatI	GCNGC	4 cut(s)	5, 74, 241, 244
Sau3AI	GATC	1 cut(s)	31
SetI	ASST	7 cut(s)	22, 85, 207, 232, 258, 263, 297
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	1 cut(s)	352
SfoI	GGCGCC	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	2 cut(s)	74, 244
SspDI	GGCGCC	1 cut(s)	346
SspMI	CTAG	2 cut(s)	296, 317
TaaI	ACNGT	1 cut(s)	356
TasI	AATT	1 cut(s)	174
TauI	GCSGC	2 cut(s)	76, 246
TfiI	GAWTC	1 cut(s)	38
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	2 cut(s)	4, 240
TspDTI	ATGAA	4 cut(s)	51, 137, 150, 167
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	1 cut(s)	253
XagI	CCTNNNNNAGG	1 cut(s)	87
XspI	CTAG	2 cut(s)	296, 317
Zsp2I	ATGCAT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.