Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8028502.1

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Forward (+)

123 .. 470

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8028502.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgtttatcaccaacactcttagcctctcttgcataacttgtatgcagcagggagaggaaggtggcaataaggatcatgaatcgcatgggaagataaggctcaacggctttgtgccggagaaactttatggaggaaccggtggagatctttgggatgatggtatgtatcatggcgtgagagaaatcactgtcacttatggtcaatgcatcgactcaattcgtgtggtgtatgatatagatggtaagcttgtcaatgctcataggcatggaggtgacggaggcgacgacactgatcaggtccgcttcaacaaaacgatttctaatgtgcacgtaacggtttgtttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

5.34

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	301
AclWI	GGATC	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	1 cut(s)	247
AluI	AGCT	1 cut(s)	247
Alw21I	GWGCWC	1 cut(s)	330
Alw44I	GTGCAC	1 cut(s)	326
AlwI	GGATC	1 cut(s)	81
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	1 cut(s)	46
AsiGI	ACCGGT	1 cut(s)	137
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	284
AvaII	GGWCC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	152, 233
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	292
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	136
BmsI	GCATC	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	137
BseGI	GGATG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	1 cut(s)	58
BshTI	ACCGGT	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	116, 138
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	73, 145, 292
BspACI	CCGC	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	81
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	73, 145, 292
Bst4CI	ACNGT	2 cut(s)	190, 337
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	3 cut(s)	76, 148, 295
BstMBI	GATC	3 cut(s)	73, 145, 292
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	186, 288
CciI	TCATGA	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	4 cut(s)	77, 86, 170, 266
CviJI	RGCY	4 cut(s)	24, 100, 108, 247
CviKI_1	RGCY	4 cut(s)	24, 100, 108, 247
DdeI	CTNAG	1 cut(s)	20
DpnI	GATC	3 cut(s)	75, 147, 294
DpnII	GATC	3 cut(s)	73, 145, 292
Eco47I	GGWCC	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	209
FaeI	CATG	4 cut(s)	80, 89, 173, 269
FatI	CATG	4 cut(s)	76, 85, 169, 265
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	47
GluI	GCNGC	1 cut(s)	47
HapII	CCGG	2 cut(s)	116, 138
Hin1II	CATG	4 cut(s)	80, 89, 173, 269
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	2 cut(s)	80, 212
HpaII	CCGG	2 cut(s)	116, 138
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	190, 337
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	33, 46, 207, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	80, 89, 173, 269
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	73, 145, 292
LpnPI	CCDG	4 cut(s)	35, 129, 151, 281
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	216
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	3 cut(s)	190, 272, 331
MalI	GATC	3 cut(s)	75, 147, 294
MboI	GATC	3 cut(s)	73, 145, 292
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	35, 49, 125, 263, 272
Mph1103I	ATGCAT	1 cut(s)	209
MslI	CAYNNNNRTG	2 cut(s)	264, 270
MspI	CCGG	2 cut(s)	116, 138
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	3 cut(s)	73, 145, 292
NlaIII	CATG	4 cut(s)	80, 89, 173, 269
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	190, 272
NsiI	ATGCAT	1 cut(s)	209
PagI	TCATGA	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	145
RseI	CAYNNNNRTG	2 cut(s)	264, 270
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	3 cut(s)	73, 145, 292
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	5 cut(s)	64, 249, 274, 300, 333
SfaNI	GCATC	1 cut(s)	216
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	264, 270
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	190, 337
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	1 cut(s)	210
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	80
TscAI	CASTG	2 cut(s)	193, 295
TseFI	GTSAC	2 cut(s)	190, 272
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	2 cut(s)	190, 272
TspDTI	ATGAA	1 cut(s)	93
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	193, 295
VneI	GTGCAC	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	298
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.