Rh2DG395400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001575
Physical Location & Seq
Reverse (-)
57506592 .. 57508273
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG395400.1

Sequence Viewer

Length: 1173 bp
ATGTTCATCACCCCCACCCTCAGCATCTCTTGTATAACTTGCATGCGGGGAGAGGAAGGTTCTAGCGTTAATGAGCTTTCAGGCCGCGGTGGTGGGAAGAACAACAGCTCAGTACGGACGTCGGAACTCTACGGAGGGTTAACCAGTGGAAGTCCTTGGGATGATGGAATCTATGATGGCGTCAGAGAAATCACTCTGGTTTATGGCCAGTGCATCGACTCCATAAGTGTGGCATATGATAAAGATGGTCAGTTTGTTAAACCCGGAAAGCATGGAGGTGTCGGGGGCGGTCACCTCCATAAGCCCCTAACTACTGTCGAGATGAAACTGGAGTATCCAGAAGAGTTCCTAGTTGGCGTAAGTGGATACTCTTGTTCGGTACCCGGGATGGCACCAGAAGTGTTGCGATCACTCAAACTTGAGAGCAATAGAAGGTCATTTGGACCGTTTGGAGTTTTAGTAGGCAATCCCTTTAGTTTCAGAGTACAAGATGGAGAACAAATTGTTGGCTTAAATGGAAGAAATGGTTGGTACCTAGATGCAATTGGGTTTCATATATCCCCTGCTCCCAAGAGTAAACTCTTTCGGAGAGTCCAACAGAGTTCGATACCGTCAGAACTTTATGGAGGAGTGGCCGGCGGAGGTCCTTGGGATGACGGAGTCTACGATGGCGTAAGAGAAATAACACTTGTTTATGGCCAAAGCATCGACTCCATATGTGTGGCATATGATATAAATGGTAAGCTTGTTAAAACCGGAAAGCATGGAGGTTATGGGGGCAATCACCTCCACAAAAACCTAAGTACCGTTGAGATAAAGTTGGAATACCCAAGTGAGTTTCTAGTTAGTGTCAGTGGATACTCTTCTTCTGTACCCGGGATGGCACCAGAGGTGTTACGCTCACTCAAATTTGAGACCAACAAAAGGTCATATGGACCGTTTGGAGTTGAAACAGGCACACCATTTACATTCAGAGTAAAAGATGGAGAGAAAATTGTTGGTTTGAAGGGAAGAAATGGTTGGTATCTAGATGCAATCGGATTTCATATATCCTATGCTCGCAAGAGAAAACGCTTTCGGATAGTTCGGAAGCATCTTTCCAAAGCTTACGAGTCCTTGGTTCAAATCACTAAACCTCTTACAAATGTTGAGTGCACACTAATAAGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

390

Amino Acids

42.46

Weight (kDa)

8.93

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 43 - 185 6.3e-34 Jacalin-like lectin domain
Jacalin PF01419 206 - 349 5.2e-39 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
Acc65I GGTACC 2 cut(s) 379, 531
AccB1I GGYRCC 4 cut(s) 379, 391, 531, 883
AccI GTMKAC 1 cut(s) 663
AccII CGCG 1 cut(s) 87
AciI CCGC 5 cut(s) 46, 85, 87, 288, 639
AcoI YGGCCR 3 cut(s) 205, 633, 697
AcsI RAATTY 1 cut(s) 908
AcyI GRCGYC 2 cut(s) 119, 180
AfaI GTAC 6 cut(s) 114, 381, 486, 533, 805, 873
AfiI CCNNNNNNNGG 1 cut(s) 924
AgsI TTSAA 3 cut(s) 950, 1006, 1124
AjuI GAANNNNNNNTTGG 6 cut(s) 489, 511, 521, 543, 1003, 1035
AluBI AGCT 5 cut(s) 76, 108, 745, 1106, 1167
AluI AGCT 5 cut(s) 76, 108, 745, 1106, 1167
Alw21I GWGCWC 1 cut(s) 1157
Alw26I GTCTC 1 cut(s) 908
Alw44I GTGCAC 1 cut(s) 1153
Ama87I CYCGRG 2 cut(s) 383, 875
AoxI GGCC 4 cut(s) 82, 205, 633, 697
ApaLI GTGCAC 1 cut(s) 1153
ApoI RAATTY 1 cut(s) 908
Asp718I GGTACC 2 cut(s) 379, 531
AspS9I GGNCC 3 cut(s) 443, 644, 935
AsuC2I CCSGG 5 cut(s) 264, 384, 385, 876, 877
AsuHPI GGTGA 2 cut(s) 284, 776
AvaI CYCGRG 2 cut(s) 383, 875
AvaII GGWCC 3 cut(s) 443, 644, 935
BaeGI GKGCMC 1 cut(s) 1157
BaeI ACNNNNGTAYC 6 cut(s) 317, 350, 358, 391, 787, 820
BalI TGGCCA 2 cut(s) 207, 699
BanI GGYRCC 4 cut(s) 379, 391, 531, 883
Bbv12I GWGCWC 1 cut(s) 1157
BbvCI CCTCAGC 1 cut(s) 20
BccI CCATC 8 cut(s) 158, 170, 239, 382, 485, 662, 874, 977
BciVI GTATCC 3 cut(s) 345, 359, 851
BcnI CCSGG 5 cut(s) 264, 384, 385, 876, 877
BcoDI GTCTC 1 cut(s) 908
BfaI CTAG 5 cut(s) 63, 350, 536, 842, 1028
BfuI GTATCC 3 cut(s) 345, 359, 851
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 5 cut(s) 264, 384, 385, 876, 877
Bme18I GGWCC 3 cut(s) 443, 644, 935
BmeT110I CYCGRG 2 cut(s) 383, 875
BmgT120I GGNCC 3 cut(s) 443, 644, 935
BmiI GGNNCC 4 cut(s) 381, 393, 533, 885
BmrFI CCNGG 5 cut(s) 264, 384, 385, 876, 877
BmsI GCATC 6 cut(s) 33, 222, 529, 714, 1021, 1102
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 5 cut(s) 264, 384, 385, 876, 877
BsaHI GRCGYC 2 cut(s) 119, 180
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 6 cut(s) 85, 155, 383, 647, 875, 1116
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 3 cut(s) 144, 208, 333
BseDI CCNNGG 6 cut(s) 85, 155, 383, 647, 875, 1116
BseGI GGATG 4 cut(s) 166, 393, 658, 885
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 34, 123
BseNI ACTGG 3 cut(s) 144, 208, 333
BseRI GAGGAG 1 cut(s) 642
BseSI GKGCMC 1 cut(s) 1157
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 84, 207, 635, 699
BshNI GGYRCC 4 cut(s) 379, 391, 531, 883
BsiHKAI GWGCWC 1 cut(s) 1157
BsiHKCI CYCGRG 2 cut(s) 383, 875
BsiSI CCGG 5 cut(s) 264, 384, 636, 756, 876
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 1 cut(s) 908
BsnI GGCC 4 cut(s) 84, 207, 635, 699
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 2 cut(s) 383, 875
Bsp1286I GDGCHC 1 cut(s) 1157
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 5 cut(s) 46, 85, 87, 288, 639
BspANI GGCC 4 cut(s) 84, 207, 635, 699
BspCNI CTCAG 2 cut(s) 33, 122
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 381, 393, 533, 885
BspT107I GGYRCC 4 cut(s) 379, 391, 531, 883
BspTNI GGTCTC 1 cut(s) 908
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 3 cut(s) 144, 208, 333
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 6 cut(s) 85, 155, 383, 647, 875, 1116
BssMI GATC 1 cut(s) 407
BssNI GRCGYC 2 cut(s) 119, 180
BssT1I CCWWGG 3 cut(s) 155, 647, 1116
Bst4CI ACNGT 5 cut(s) 316, 447, 612, 808, 939
Bst6I CTCTTC 2 cut(s) 336, 868
BstACI GRCGYC 2 cut(s) 119, 180
BstC8I GCNNGC 3 cut(s) 44, 637, 1060
BstDEI CTNAG 3 cut(s) 20, 109, 800
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 4 cut(s) 166, 393, 658, 885
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 1 cut(s) 410
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 1 cut(s) 407
BstNSI RCATGY 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 5 cut(s) 262, 382, 383, 874, 875
BstSLI GKGCMC 1 cut(s) 1157
BstUI CGCG 1 cut(s) 87
BstXI CCANNNNNNTGG 2 cut(s) 229, 721
BsuI GTATCC 3 cut(s) 345, 359, 851
BsuRI GGCC 4 cut(s) 84, 207, 635, 699
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 4 cut(s) 166, 393, 658, 885
BtsIMutI CAGTG 3 cut(s) 151, 215, 859
Cac8I GCNNGC 3 cut(s) 44, 637, 1060
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 443, 644, 935
Cfr42I CCGCGG 1 cut(s) 88
Cfr9I CCCGGG 2 cut(s) 383, 875
CseI GACGC 1 cut(s) 169
Csp6I GTAC 6 cut(s) 113, 380, 485, 532, 804, 872
CviAII CATG 3 cut(s) 43, 272, 764
CviQI GTAC 6 cut(s) 113, 380, 485, 532, 804, 872
DdeI CTNAG 3 cut(s) 20, 109, 800
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
EaeI YGGCCR 3 cut(s) 205, 633, 697
Eam1104I CTCTTC 2 cut(s) 336, 868
EarI CTCTTC 2 cut(s) 336, 868
EciI GGCGGA 1 cut(s) 654
Eco130I CCWWGG 3 cut(s) 155, 647, 1116
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 3 cut(s) 443, 644, 935
Eco88I CYCGRG 2 cut(s) 383, 875
Eco91I GGTNACC 1 cut(s) 290
EcoO109I RGGNCCY 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 290
EcoT14I CCWWGG 3 cut(s) 155, 647, 1116
ErhI CCWWGG 3 cut(s) 155, 647, 1116
FaeI CATG 3 cut(s) 46, 275, 767
FatI CATG 3 cut(s) 42, 271, 763
FauI CCCGC 1 cut(s) 39
FauNDI CATATG 4 cut(s) 235, 716, 727, 931
FblI GTMKAC 1 cut(s) 663
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 4 cut(s) 173, 400, 665, 892
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 5 cut(s) 63, 350, 536, 842, 1028
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 4 cut(s) 84, 207, 635, 699
HapII CCGG 5 cut(s) 264, 384, 636, 756, 876
HgaI GACGC 1 cut(s) 169
Hin1I GRCGYC 2 cut(s) 119, 180
Hin1II CATG 3 cut(s) 46, 275, 767
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 3 cut(s) 743, 1104, 1165
HinfI GANTC 6 cut(s) 168, 218, 591, 660, 710, 1112
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 5 cut(s) 264, 384, 636, 756, 876
HphI GGTGA 2 cut(s) 284, 776
Hpy166II GTNNAC 4 cut(s) 141, 578, 664, 1155
Hpy188I TCNGA 9 cut(s) 124, 185, 482, 588, 616, 974, 1040, 1080, 1089
Hpy188III TCNNGA 3 cut(s) 319, 338, 1028
Hpy8I GTNNAC 4 cut(s) 141, 578, 664, 1155
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 50, 426, 1000
HpyCH4III ACNGT 5 cut(s) 316, 447, 612, 808, 939
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 42, 213, 542, 1034, 1155
HpyF3I CTNAG 3 cut(s) 20, 109, 800
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 2 cut(s) 119, 180
Hsp92II CATG 3 cut(s) 46, 275, 767
KpnI GGTACC 2 cut(s) 383, 535
KroI GCCGGC 1 cut(s) 635
KroNI GCCGGC 1 cut(s) 637
KspAI GTTAAC 1 cut(s) 141
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 1 cut(s) 407
LmnI GCTCC 1 cut(s) 571
LweI GCATC 6 cut(s) 33, 222, 529, 714, 1021, 1102
MaeI CTAG 5 cut(s) 63, 350, 536, 842, 1028
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 290, 894
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 6 cut(s) 109, 353, 531, 855, 858, 1023
MfeI CAATTG 1 cut(s) 543
MhlI GDGCHC 1 cut(s) 1157
MlsI TGGCCA 2 cut(s) 207, 699
MluCI AATT 4 cut(s) 501, 543, 908, 993
MluNI TGGCCA 2 cut(s) 207, 699
MlyI GAGTC 5 cut(s) 212, 600, 669, 704, 1121
MmeI TCCRAC 3 cut(s) 102, 619, 801
Mox20I TGGCCA 2 cut(s) 207, 699
MroNI GCCGGC 1 cut(s) 635
MscI TGGCCA 2 cut(s) 207, 699
MseI TTAA 5 cut(s) 69, 140, 258, 512, 750
MslI CAYNNNNRTG 3 cut(s) 227, 276, 719
Msp20I TGGCCA 2 cut(s) 207, 699
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 5 cut(s) 264, 384, 636, 756, 876
MspR9I CCNGG 5 cut(s) 264, 384, 385, 876, 877
MunI CAATTG 1 cut(s) 543
MvnI CGCG 1 cut(s) 87
NaeI GCCGGC 1 cut(s) 637
NciI CCSGG 5 cut(s) 264, 384, 385, 876, 877
NdeI CATATG 4 cut(s) 235, 716, 727, 931
NdeII GATC 1 cut(s) 407
NgoMIV GCCGGC 1 cut(s) 635
NlaIII CATG 3 cut(s) 46, 275, 767
NlaIV GGNNCC 4 cut(s) 381, 393, 533, 885
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 1 cut(s) 46
PaeI GCATGC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdiI GCCGGC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 168
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 5 cut(s) 212, 599, 668, 704, 1120
PpsI GAGTC 5 cut(s) 212, 599, 668, 704, 1120
PpuMI RGGWCCY 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 644
PspEI GGTNACC 1 cut(s) 290
PspN4I GGNNCC 4 cut(s) 381, 393, 533, 885
PspPI GGNCC 3 cut(s) 443, 644, 935
PspPPI RGGWCCY 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 6 cut(s) 114, 381, 486, 533, 805, 873
RsaNI GTAC 6 cut(s) 113, 380, 485, 532, 804, 872
RseI CAYNNNNRTG 3 cut(s) 227, 276, 719
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 5 cut(s) 69, 140, 258, 512, 750
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 407
Sau96I GGNCC 3 cut(s) 443, 644, 935
SchI GAGTC 5 cut(s) 212, 600, 669, 704, 1121
ScrFI CCNGG 5 cut(s) 264, 384, 385, 876, 877
SduI GDGCHC 1 cut(s) 1157
SfaNI GCATC 6 cut(s) 33, 222, 529, 714, 1021, 1102
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 3 cut(s) 443, 644, 935
SmaI CCCGGG 2 cut(s) 385, 877
SmiMI CAYNNNNRTG 3 cut(s) 227, 276, 719
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 46
Sse9I AATT 4 cut(s) 501, 543, 908, 993
SsiI CCGC 5 cut(s) 46, 85, 87, 288, 639
SspMI CTAG 5 cut(s) 63, 350, 536, 842, 1028
StyD4I CCNGG 5 cut(s) 262, 382, 383, 874, 875
StyI CCWWGG 3 cut(s) 155, 647, 1116
TaaI ACNGT 5 cut(s) 316, 447, 612, 808, 939
TaiI ACGT 1 cut(s) 122
TaqI TCGA 4 cut(s) 216, 318, 605, 708
TasI AATT 4 cut(s) 501, 543, 908, 993
TatI WGTACW 1 cut(s) 484
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 5 cut(s) 69, 140, 258, 512, 750
Tru9I TTAA 5 cut(s) 69, 140, 258, 512, 750
TscAI CASTG 3 cut(s) 151, 215, 859
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 338, 542, 1034
TspGWI ACGGA 3 cut(s) 130, 147, 672
TspMI CCCGGG 2 cut(s) 383, 875
TspRI CASTG 3 cut(s) 151, 215, 859
Tth111I GACNNNGTC 1 cut(s) 659
VneI GTGCAC 1 cut(s) 1153
VpaK11BI GGWCC 3 cut(s) 443, 644, 935
XapI RAATTY 1 cut(s) 908
XbaI TCTAGA 1 cut(s) 1027
XceI RCATGY 1 cut(s) 46
XmaI CCCGGG 2 cut(s) 383, 875
XmiI GTMKAC 1 cut(s) 663
XspI CTAG 5 cut(s) 63, 350, 536, 842, 1028
ZraI GACGTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.