Rh2DG442600

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001575
Physical Location & Seq
Forward (+)
64289890 .. 64290902
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG442600.1

Sequence Viewer

Length: 630 bp
ATGCTCAAACTTCAAACTTATTCCATAATTTCATCGATCGGTATGGAGAGTGGGAAGGACAATGCTAGTGGGAAGAGGAAGACCATAGTATTGGGACCATGGGGAGGCAATGGCGGAAACGTTTGGGATGATGGGCTCTATCATGGGGTGAGAGAAATCACTCTCATCTATGGCCATTGCATCGACTCCATTGTTGTGGTGTATGATAAGAACGGTAAGCCGGTCACATCAGAAAAGCATGGTGGTCTTGGAGGCAATCGAACAGCCGAGATCAAGTTGCAGTACCCCGATGAGTTCCTAGTGAGTGTGAGCGGACACTATTGTCCGGTGGTGTATGGTGGCAGCCCGGTGATCCGGTCACTCAAATTTGAGAGTAATAGGAGAACATTTGGAACATTTGGAGTTGAAGAAGGCACACCCTTTACTTTCACTGTGGATGGAGGCAAAATTGTTGGCTTAAAGGGAAGAGGTGGTTGGTACCTAGATGCAATTGGGTTTCACGTATGCCATGCTCCCAAAGGAAAGCTCTTTCGGAGAGTTCAGAAAAGTTTCAGAAGGCTTGCCAGCACGGTTTCAAAACCCCTGGCCACCAAAGAAACTGAAAAGACTACTGCTGAGTGTCGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

209

Amino Acids

22.82

Weight (kDa)

9.49

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 31 - 167 2.2e-43 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 321
Acc65I GGTACC 1 cut(s) 477
AccB1I GGYRCC 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 312
AciI CCGC 2 cut(s) 114, 312
AclI AACGTT 1 cut(s) 120
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 2 cut(s) 172, 585
AcsI RAATTY 1 cut(s) 365
AfaI GTAC 2 cut(s) 284, 479
AfiI CCNNNNNNNGG 1 cut(s) 104
AgsI TTSAA 3 cut(s) 14, 407, 576
AjnI CCWGG 1 cut(s) 582
AjuI GAANNNNNNNTTGG 2 cut(s) 457, 489
AluBI AGCT 1 cut(s) 526
AluI AGCT 1 cut(s) 526
AlwI GGATC 1 cut(s) 346
AoxI GGCC 2 cut(s) 172, 585
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 548
Asp718I GGTACC 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 160, 361
AvaII GGWCC 1 cut(s) 95
BalI TGGCCA 2 cut(s) 174, 587
BanI GGYRCC 1 cut(s) 477
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 86
BbvI GCAGC 1 cut(s) 354
BccI CCATC 2 cut(s) 125, 431
BciT130I CCWGG 1 cut(s) 584
BcnI CCSGG 1 cut(s) 347
BfaI CTAG 3 cut(s) 66, 299, 482
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 2 cut(s) 347, 584
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 96, 479
BmrFI CCNGG 2 cut(s) 347, 584
BmsI GCATC 2 cut(s) 189, 475
BpiI GAAGAC 1 cut(s) 86
BpuMI CCSGG 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 98, 582
BsaWI WCCGGW 2 cut(s) 325, 354
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse118I RCCGGY 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 115, 175
BseBI CCWGG 1 cut(s) 584
BseCI ATCGAT 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 98, 582
BseGI GGATG 2 cut(s) 133, 442
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMI GCAATG 2 cut(s) 115, 175
BseMII CTCAG 1 cut(s) 606
BseXI GCAGC 1 cut(s) 354
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 174, 587
BshNI GGYRCC 1 cut(s) 477
BshVI ATCGAT 1 cut(s) 35
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 4 cut(s) 221, 326, 347, 355
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 174, 587
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 3 cut(s) 36, 270, 351
Bsp19I CCATGG 1 cut(s) 98
BspACI CCGC 2 cut(s) 114, 312
BspANI GGCC 2 cut(s) 174, 587
BspCNI CTCAG 1 cut(s) 607
BspDI ATCGAT 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 96, 479
BspPI GGATC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 477
BsrBI CCGCTC 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 115, 175
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 2 cut(s) 98, 582
BssMI GATC 3 cut(s) 36, 270, 351
BssT1I CCWWGG 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 3 cut(s) 215, 433, 571
Bst6I CTCTTC 2 cut(s) 68, 460
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 2 cut(s) 561, 565
BstDEI CTNAG 1 cut(s) 615
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 133, 442
BstKTI GATC 3 cut(s) 39, 273, 354
BstMBI GATC 3 cut(s) 36, 270, 351
BstMCI CGRYCG 1 cut(s) 39
BstNI CCWGG 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 345, 582
BstV1I GCAGC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 86
BstXI CCANNNNNNTGG 2 cut(s) 91, 196
Bsu15I ATCGAT 1 cut(s) 35
BsuRI GGCC 2 cut(s) 174, 587
BsuTUI ATCGAT 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 2 cut(s) 133, 442
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 2 cut(s) 561, 565
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 35
Csp6I GTAC 2 cut(s) 283, 478
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 99, 143, 239, 509
CviJI RGCY 9 cut(s) 136, 174, 220, 266, 345, 456, 526, 559, 587
CviKI_1 RGCY 9 cut(s) 136, 174, 220, 266, 345, 456, 526, 559, 587
CviQI GTAC 2 cut(s) 283, 478
DdeI CTNAG 1 cut(s) 615
DpnI GATC 3 cut(s) 38, 272, 353
DpnII GATC 3 cut(s) 36, 270, 351
DrdI GACNNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 321
EaeI YGGCCR 2 cut(s) 172, 585
Eam1104I CTCTTC 2 cut(s) 68, 460
EarI CTCTTC 2 cut(s) 68, 460
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 98
FaeI CATG 4 cut(s) 102, 146, 242, 512
FaqI GGGAC 1 cut(s) 108
FatI CATG 4 cut(s) 98, 142, 238, 508
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 2 cut(s) 140, 449
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 3 cut(s) 66, 299, 482
GluI GCNGC 1 cut(s) 343
HaeIII GGCC 2 cut(s) 174, 587
HapII CCGG 4 cut(s) 221, 326, 347, 355
Hin1II CATG 4 cut(s) 102, 146, 242, 512
HinfI GANTC 1 cut(s) 185
HpaII CCGG 4 cut(s) 221, 326, 347, 355
HphI GGTGA 2 cut(s) 160, 361
Hpy188I TCNGA 4 cut(s) 232, 534, 543, 554
HpyAV CCTTC 3 cut(s) 49, 404, 549
HpyCH4III ACNGT 3 cut(s) 215, 433, 571
HpyCH4IV ACGT 2 cut(s) 120, 501
HpyCH4V TGCA 3 cut(s) 180, 280, 488
HpyF3I CTNAG 1 cut(s) 615
HpySE526I ACGT 2 cut(s) 120, 501
Hsp92II CATG 4 cut(s) 102, 146, 242, 512
KpnI GGTACC 1 cut(s) 481
Kzo9I GATC 3 cut(s) 36, 270, 351
LmnI GCTCC 1 cut(s) 517
LpnPI CCDG 7 cut(s) 234, 339, 360, 368, 569, 577, 596
Lsp1109I GCAGC 1 cut(s) 354
LweI GCATC 2 cut(s) 189, 475
MaeI CTAG 3 cut(s) 66, 299, 482
MaeII ACGT 2 cut(s) 120, 501
MaeIII GTNAC 2 cut(s) 223, 357
MalI GATC 3 cut(s) 38, 272, 353
MbiI CCGCTC 1 cut(s) 312
MboI GATC 3 cut(s) 36, 270, 351
MboII GAAGA 4 cut(s) 85, 91, 419, 477
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 138
MlsI TGGCCA 2 cut(s) 174, 587
MluCI AATT 5 cut(s) 27, 365, 447, 489, 625
MluNI TGGCCA 2 cut(s) 174, 587
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 5 cut(s) 69, 98, 245, 434, 461
Mox20I TGGCCA 2 cut(s) 174, 587
MroXI GAANNNNTTC 1 cut(s) 548
MscI TGGCCA 2 cut(s) 174, 587
MseI TTAA 2 cut(s) 458, 628
MslI CAYNNNNRTG 1 cut(s) 194
Msp20I TGGCCA 2 cut(s) 174, 587
MspI CCGG 4 cut(s) 221, 326, 347, 355
MspR9I CCNGG 2 cut(s) 347, 584
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 584
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 98
NdeII GATC 3 cut(s) 36, 270, 351
NlaIII CATG 4 cut(s) 102, 146, 242, 512
NlaIV GGNNCC 2 cut(s) 96, 479
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 2 cut(s) 223, 357
PdmI GAANNNNTTC 1 cut(s) 548
PkrI GCNGC 1 cut(s) 344
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 502
Psp1406I AACGTT 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 2 cut(s) 96, 479
PspPI GGNCC 1 cut(s) 95
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 2 cut(s) 284, 479
RsaNI GTAC 2 cut(s) 283, 478
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 2 cut(s) 458, 628
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 3 cut(s) 36, 270, 351
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 347, 584
SduI GDGCHC 1 cut(s) 138
SetI ASST 5 cut(s) 123, 472, 483, 504, 528
SfaNI GCATC 2 cut(s) 189, 475
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 5 cut(s) 27, 365, 447, 489, 625
SsiI CCGC 2 cut(s) 114, 312
SspMI CTAG 3 cut(s) 66, 299, 482
StyD4I CCNGG 2 cut(s) 345, 582
StyI CCWWGG 1 cut(s) 98
TaaI ACNGT 3 cut(s) 215, 433, 571
TaiI ACGT 2 cut(s) 123, 504
TaqI TCGA 4 cut(s) 35, 183, 259, 622
TasI AATT 5 cut(s) 27, 365, 447, 489, 625
Tru1I TTAA 2 cut(s) 458, 628
Tru9I TTAA 2 cut(s) 458, 628
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 2 cut(s) 223, 357
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 2 cut(s) 223, 357
TspDTI ATGAA 1 cut(s) 21
TspRI CASTG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 548
XspI CTAG 3 cut(s) 66, 299, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.