Rw0G014850

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00663
OG0001575
Physical Location & Seq
Reverse (-)
23942 .. 24814
873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G014850.1

Sequence Viewer

Length: 435 bp
ATGCAGCAGGGAGAGGAAGGTGGCAATAAGGATCATGAATCGCATGGGAAACTTTATGGAGGAACCGGTGGAGATCTTTGGGATGATGGTATGTACCATGGCGTGAGAGAAATCACTGTCACTTATGGTCAATGCATCGACTCAATTCGTGTGGTGTATGATATAGATGGTAAGCTTGTCAATGCTCATAGGCATGGAGGTGACGGAGGCGACGACACTGATCAGACTATCCGAATGAGTTTTCTAGTGAGTGTTAGCGGACACTATTCAGAGGCGCCCAATGGCGATGCGGTGGTGATATCGTCACTCAAATTCGAGAGCAATAGGAGAACGGAAGAAGTGGTTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCCAAAAGAAACTCTTTCGGAAATTAAGGAGGGTCTTAAAAAGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

144

Amino Acids

16.03

Weight (kDa)

6.03

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 18 - 114 1.7e-19 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 2 cut(s) 258, 290
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 311
AcyI GRCGYC 1 cut(s) 275
AfaI GTAC 2 cut(s) 95, 350
AgeI ACCGGT 1 cut(s) 65
AluBI AGCT 2 cut(s) 175, 429
AluI AGCT 2 cut(s) 175, 429
AlwI GGATC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 65
AspLEI GCGC 1 cut(s) 277
AsuHPI GGTGA 2 cut(s) 212, 307
BanI GGYRCC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 80, 161
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 245
BfoI RGCGCY 1 cut(s) 278
BglII AGATCT 1 cut(s) 73
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 64, 276
BmsI GCATC 3 cut(s) 144, 277, 346
BsaHI GRCGYC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 65
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 16
BshNI GGYRCC 1 cut(s) 274
BshTI ACCGGT 1 cut(s) 65
BsiSI CCGG 1 cut(s) 66
Bsp143I GATC 3 cut(s) 31, 73, 220
Bsp19I CCATGG 1 cut(s) 97
BspACI CCGC 2 cut(s) 258, 290
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 64, 276
BspPI GGATC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 3 cut(s) 31, 73, 220
BssNI GRCGYC 1 cut(s) 275
BssT1I CCWWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 118
BstACI GRCGYC 1 cut(s) 275
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 3 cut(s) 34, 76, 223
BstMBI GATC 3 cut(s) 31, 73, 220
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 114, 216
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 277
Cfr10I RCCGGY 1 cut(s) 65
Csp6I GTAC 2 cut(s) 94, 349
CspAI ACCGGT 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 132, 167
CviAII CATG 5 cut(s) 35, 44, 98, 194, 380
CviJI RGCY 2 cut(s) 175, 429
CviKI_1 RGCY 2 cut(s) 175, 429
CviQI GTAC 2 cut(s) 94, 349
DinI GGCGCC 1 cut(s) 276
DpnI GATC 3 cut(s) 33, 75, 222
DpnII GATC 3 cut(s) 31, 73, 220
Eco130I CCWWGG 1 cut(s) 97
Eco32I GATATC 1 cut(s) 300
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 97
EcoT22I ATGCAT 1 cut(s) 137
EgeI GGCGCC 1 cut(s) 276
EheI GGCGCC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 5 cut(s) 38, 47, 101, 197, 383
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FatI CATG 5 cut(s) 34, 43, 97, 193, 379
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 245
GlaI GCGC 1 cut(s) 276
GluI GCNGC 1 cut(s) 5
HaeII RGCGCY 1 cut(s) 278
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 275
Hin1II CATG 5 cut(s) 38, 47, 101, 197, 383
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 2 cut(s) 173, 427
HinfI GANTC 2 cut(s) 38, 140
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 212, 307
Hpy188I TCNGA 4 cut(s) 225, 233, 271, 405
Hpy188III TCNNGA 2 cut(s) 35, 316
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 11
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 4, 135, 359
Hsp92I GRCGYC 1 cut(s) 275
Hsp92II CATG 5 cut(s) 38, 47, 101, 197, 383
HspAI GCGC 1 cut(s) 275
KasI GGCGCC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 31, 73, 220
LpnPI CCDG 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 3 cut(s) 144, 277, 346
MaeI CTAG 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 118, 200, 303
MalI GATC 3 cut(s) 33, 75, 222
MboI GATC 3 cut(s) 31, 73, 220
MboII GAAGA 1 cut(s) 347
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 1 cut(s) 73
MluCI AATT 4 cut(s) 144, 311, 360, 407
Mly113I GGCGCC 1 cut(s) 275
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 6 cut(s) 7, 53, 191, 200, 265, 408
Mph1103I ATGCAT 1 cut(s) 137
MseI TTAA 2 cut(s) 410, 422
MslI CAYNNNNRTG 2 cut(s) 192, 198
MspI CCGG 1 cut(s) 66
MunI CAATTG 1 cut(s) 360
NarI GGCGCC 1 cut(s) 275
NcoI CCATGG 1 cut(s) 97
NdeII GATC 3 cut(s) 31, 73, 220
NlaIII CATG 5 cut(s) 38, 47, 101, 197, 383
NlaIV GGNNCC 2 cut(s) 64, 276
NmuCI GTSAC 3 cut(s) 118, 200, 303
NsiI ATGCAT 1 cut(s) 137
PagI TCATGA 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 134
PluTI GGCGCC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 64, 276
PsuI RGATCY 1 cut(s) 73
RsaI GTAC 2 cut(s) 95, 350
RsaNI GTAC 2 cut(s) 94, 349
RseI CAYNNNNRTG 2 cut(s) 192, 198
SaqAI TTAA 2 cut(s) 410, 422
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 3 cut(s) 31, 73, 220
SchI GAGTC 1 cut(s) 134
SetI ASST 4 cut(s) 22, 177, 202, 431
SfaNI GCATC 3 cut(s) 144, 277, 346
SfoI GGCGCC 1 cut(s) 276
SmiMI CAYNNNNRTG 2 cut(s) 192, 198
Sse9I AATT 4 cut(s) 144, 311, 360, 407
SsiI CCGC 2 cut(s) 258, 290
SspDI GGCGCC 1 cut(s) 274
SspMI CTAG 1 cut(s) 245
StyI CCWWGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 118
TaqI TCGA 2 cut(s) 138, 315
TasI AATT 4 cut(s) 144, 311, 360, 407
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 2 cut(s) 410, 422
Tru9I TTAA 2 cut(s) 410, 422
TscAI CASTG 2 cut(s) 121, 223
TseFI GTSAC 3 cut(s) 118, 200, 303
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 3 cut(s) 118, 200, 303
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 2 cut(s) 219, 347
TspRI CASTG 2 cut(s) 121, 223
XapI RAATTY 1 cut(s) 311
XspI CTAG 1 cut(s) 245
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.