Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000401.1

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Reverse (-)

1940 .. 3028

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000401.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgaaactggagtatccagaagagttcctagttggcgtcagtggatactcttgttcggtacccgggatggcaccagaagtgttgcgatcactcaaacttgagagcaatagaaggtcatttggaccgtttggagttttagtaggcaatccctttagtttcagagtacaagatggagaacaaattgttggcttaaagggaagaaatggttggtacctagatgcaattgggtttcatatatcccctgctcccaagagtaaactctttcggagagtccaacagagttcgataccgtcagaactttatggaggagtggccggcggaggtccttgggatgacggagtctacgatggcgtaagagaaataacacttgtttatggccaatgcatcgactccatatgtgtggcatatgatataaatggtaagcttgttaaaaccggaaagcatggaggttatgggggcaatcacctccacaaaaacctaagtaccgttgagataaagttggaatacccaagtgagtttctagttagtgtcagtggatactcttcttctgtacccgggatggcaccagaggtgttacgctcactcaaatttgagaccaacaaaaggtcatatggaccgtttggagttgaaacaggcacaccatttacattcagagtaaaagatggagagaaaattgttggtttgaagggaagaaatggttggtatctagatgcaatcgggtttcatatatcctatgctcgcaagagaaaacgctttcggatagttcggaagcatctttccaaagcttacgagtccttggttcaaatcactaaacctcttacaaatgttgagtgcacactaataagcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

283

Amino Acids

31.27

Weight (kDa)

9.42

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	58, 210
AccB1I	GGYRCC	4 cut(s)	58, 70, 210, 562
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	1 cut(s)	318
AcoI	YGGCCR	2 cut(s)	312, 376
AcsI	RAATTY	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	5 cut(s)	60, 165, 212, 484, 552
AfiI	CCNNNNNNNGG	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	629, 685, 803
AjuI	GAANNNNNNNTTGG	6 cut(s)	168, 190, 200, 222, 682, 714
AluBI	AGCT	3 cut(s)	424, 785, 846
AluI	AGCT	3 cut(s)	424, 785, 846
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	1 cut(s)	587
Alw44I	GTGCAC	1 cut(s)	832
Ama87I	CYCGRG	2 cut(s)	62, 554
AoxI	GGCC	2 cut(s)	312, 376
ApaLI	GTGCAC	1 cut(s)	832
ApoI	RAATTY	1 cut(s)	587
Asp718I	GGTACC	2 cut(s)	58, 210
AspS9I	GGNCC	3 cut(s)	122, 323, 614
AsuC2I	CCSGG	4 cut(s)	63, 64, 555, 556
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	2 cut(s)	62, 554
AvaII	GGWCC	3 cut(s)	122, 323, 614
BaeGI	GKGCMC	1 cut(s)	836
BaeI	ACNNNNGTAYC	5 cut(s)	29, 37, 70, 466, 499
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	4 cut(s)	58, 70, 210, 562
Bbv12I	GWGCWC	1 cut(s)	836
BccI	CCATC	5 cut(s)	61, 164, 341, 553, 656
BciVI	GTATCC	3 cut(s)	24, 38, 530
BcnI	CCSGG	4 cut(s)	63, 64, 555, 556
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	4 cut(s)	29, 215, 521, 707
BfuI	GTATCC	3 cut(s)	24, 38, 530
Bme1390I	CCNGG	4 cut(s)	63, 64, 555, 556
Bme18I	GGWCC	3 cut(s)	122, 323, 614
BmeT110I	CYCGRG	2 cut(s)	62, 554
BmgT120I	GGNCC	3 cut(s)	122, 323, 614
BmiI	GGNNCC	4 cut(s)	60, 72, 212, 564
BmrFI	CCNGG	4 cut(s)	63, 64, 555, 556
BmsI	GCATC	4 cut(s)	208, 393, 700, 781
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	4 cut(s)	63, 64, 555, 556
BsaHI	GRCGYC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	587
BsaJI	CCNNGG	4 cut(s)	62, 326, 554, 795
BsaWI	WCCGGW	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	603
Bse118I	RCCGGY	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	12
BseDI	CCNNGG	4 cut(s)	62, 326, 554, 795
BseGI	GGATG	3 cut(s)	72, 337, 564
BseLI	CCNNNNNNNGG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	321
BseSI	GKGCMC	1 cut(s)	836
BshFI	GGCC	2 cut(s)	314, 378
BshNI	GGYRCC	4 cut(s)	58, 70, 210, 562
BsiHKAI	GWGCWC	1 cut(s)	836
BsiHKCI	CYCGRG	2 cut(s)	62, 554
BsiSI	CCGG	4 cut(s)	63, 315, 435, 555
BslI	CCNNNNNNNGG	1 cut(s)	603
BsmAI	GTCTC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	314, 378
Bso31I	GGTCTC	1 cut(s)	587
BsoBI	CYCGRG	2 cut(s)	62, 554
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	314, 378
BspLI	GGNNCC	4 cut(s)	60, 72, 212, 564
BspT107I	GGYRCC	4 cut(s)	58, 70, 210, 562
BspTNI	GGTCTC	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	314
BsrI	ACTGG	1 cut(s)	12
BssAI	RCCGGY	1 cut(s)	314
BssECI	CCNNGG	4 cut(s)	62, 326, 554, 795
BssMI	GATC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	2 cut(s)	326, 795
Bst4CI	ACNGT	4 cut(s)	126, 291, 487, 618
Bst6I	CTCTTC	2 cut(s)	15, 547
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	316, 739
BstDEI	CTNAG	1 cut(s)	479
BstF5I	GGATG	3 cut(s)	72, 337, 564
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	1 cut(s)	86
BstSCI	CCNGG	4 cut(s)	61, 62, 553, 554
BstSLI	GKGCMC	1 cut(s)	836
BstXI	CCANNNNNNTGG	1 cut(s)	400
BsuI	GTATCC	3 cut(s)	24, 38, 530
BsuRI	GGCC	2 cut(s)	314, 378
BtsCI	GGATG	3 cut(s)	72, 337, 564
BtsIMutI	CAGTG	2 cut(s)	46, 538
Cac8I	GCNNGC	2 cut(s)	316, 739
Cfr10I	RCCGGY	1 cut(s)	314
Cfr13I	GGNCC	3 cut(s)	122, 323, 614
Cfr9I	CCCGGG	2 cut(s)	62, 554
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	5 cut(s)	59, 164, 211, 483, 551
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	6 cut(s)	189, 314, 378, 424, 785, 846
CviKI_1	RGCY	6 cut(s)	189, 314, 378, 424, 785, 846
CviQI	GTAC	5 cut(s)	59, 164, 211, 483, 551
DdeI	CTNAG	1 cut(s)	479
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	312, 376
Eam1104I	CTCTTC	2 cut(s)	15, 547
EarI	CTCTTC	2 cut(s)	15, 547
EciI	GGCGGA	1 cut(s)	333
Eco130I	CCWWGG	2 cut(s)	326, 795
Eco31I	GGTCTC	1 cut(s)	587
Eco47I	GGWCC	3 cut(s)	122, 323, 614
Eco88I	CYCGRG	2 cut(s)	62, 554
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT14I	CCWWGG	2 cut(s)	326, 795
EcoT22I	ATGCAT	1 cut(s)	386
ErhI	CCWWGG	2 cut(s)	326, 795
FaeI	CATG	1 cut(s)	446
FatI	CATG	1 cut(s)	442
FauNDI	CATATG	3 cut(s)	395, 406, 610
FblI	GTMKAC	1 cut(s)	342
FokI	GGATG	3 cut(s)	79, 344, 571
FspBI	CTAG	4 cut(s)	29, 215, 521, 707
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	314, 378
HapII	CCGG	4 cut(s)	63, 315, 435, 555
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	446
HindIII	AAGCTT	3 cut(s)	422, 783, 844
HinfI	GANTC	4 cut(s)	270, 339, 389, 791
HpaII	CCGG	4 cut(s)	63, 315, 435, 555
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	257, 343, 834
Hpy188I	TCNGA	6 cut(s)	161, 267, 295, 653, 759, 768
Hpy188III	TCNNGA	2 cut(s)	17, 707
Hpy8I	GTNNAC	3 cut(s)	257, 343, 834
HpyAV	CCTTC	2 cut(s)	105, 679
HpyCH4III	ACNGT	4 cut(s)	126, 291, 487, 618
HpyCH4V	TGCA	4 cut(s)	221, 384, 713, 834
HpyF3I	CTNAG	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	446
KpnI	GGTACC	2 cut(s)	62, 214
KroI	GCCGGC	1 cut(s)	314
KroNI	GCCGGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	9 cut(s)	30, 76, 87, 255, 328, 448, 568, 579, 618
LweI	GCATC	4 cut(s)	208, 393, 700, 781
MaeI	CTAG	4 cut(s)	29, 215, 521, 707
MaeIII	GTNAC	1 cut(s)	573
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	5 cut(s)	32, 210, 534, 537, 702
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	1 cut(s)	836
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	4 cut(s)	180, 222, 587, 672
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	4 cut(s)	279, 348, 383, 800
MmeI	TCCRAC	2 cut(s)	298, 480
MnlI	CCTC	6 cut(s)	299, 314, 440, 476, 562, 825
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	386
MroNI	GCCGGC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	2 cut(s)	191, 429
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	4 cut(s)	63, 315, 435, 555
MspR9I	CCNGG	4 cut(s)	63, 64, 555, 556
MunI	CAATTG	1 cut(s)	222
NaeI	GCCGGC	1 cut(s)	316
NciI	CCSGG	4 cut(s)	63, 64, 555, 556
NdeI	CATATG	3 cut(s)	395, 406, 610
NdeII	GATC	1 cut(s)	86
NgoMIV	GCCGGC	1 cut(s)	314
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	4 cut(s)	60, 72, 212, 564
NsiI	ATGCAT	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	338
PleI	GAGTC	4 cut(s)	278, 347, 383, 799
PpsI	GAGTC	4 cut(s)	278, 347, 383, 799
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
PspN4I	GGNNCC	4 cut(s)	60, 72, 212, 564
PspPI	GGNCC	3 cut(s)	122, 323, 614
PspPPI	RGGWCCY	1 cut(s)	323
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	5 cut(s)	60, 165, 212, 484, 552
RsaNI	GTAC	5 cut(s)	59, 164, 211, 483, 551
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	2 cut(s)	191, 429
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	3 cut(s)	122, 323, 614
SchI	GAGTC	4 cut(s)	279, 348, 383, 800
ScrFI	CCNGG	4 cut(s)	63, 64, 555, 556
SduI	GDGCHC	1 cut(s)	836
SfaNI	GCATC	4 cut(s)	208, 393, 700, 781
SinI	GGWCC	3 cut(s)	122, 323, 614
SmaI	CCCGGG	2 cut(s)	64, 556
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	180, 222, 587, 672
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	4 cut(s)	29, 215, 521, 707
StyD4I	CCNGG	4 cut(s)	61, 62, 553, 554
StyI	CCWWGG	2 cut(s)	326, 795
TaaI	ACNGT	4 cut(s)	126, 291, 487, 618
TaqI	TCGA	2 cut(s)	284, 387
TasI	AATT	4 cut(s)	180, 222, 587, 672
TatI	WGTACW	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	191, 429
Tru9I	TTAA	2 cut(s)	191, 429
TscAI	CASTG	2 cut(s)	46, 538
TspDTI	ATGAA	3 cut(s)	17, 221, 713
TspGWI	ACGGA	1 cut(s)	351
TspMI	CCCGGG	2 cut(s)	62, 554
TspRI	CASTG	2 cut(s)	46, 538
Tth111I	GACNNNGTC	1 cut(s)	338
VneI	GTGCAC	1 cut(s)	832
VpaK11BI	GGWCC	3 cut(s)	122, 323, 614
XapI	RAATTY	1 cut(s)	587
XbaI	TCTAGA	1 cut(s)	706
XmaI	CCCGGG	2 cut(s)	62, 554
XmiI	GTMKAC	1 cut(s)	342
XspI	CTAG	4 cut(s)	29, 215, 521, 707
Zsp2I	ATGCAT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.