Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Forward (+)

25931567 .. 25932026

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g32861.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGTTTTTCATCACATAGAAGCTAGTAACCTTATTTGTGATGGATTACAGATAAAGTTGGAATACCCAAATGAGTTTATAGTGAGTGTCACCGGACACTATGGGGGAGTGACCTGGATAGTCGGCGCTCCGGTAGTGTTACTGTCACTCAGATTTGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTACAAGTTGGCACACCCTTCACTTTCAGAGTAAAAGATGGAGACCAAATAGTTGGATTGAAGGGAAGAAATGGTTGGTATCTAGATGCAATTGGGTTTCATACATCTCGTGCTCCCGAGAGAGGACTCTTCCGGAGGGTTCGGAAGGGTTTTTGGAAAGCTTACGAGTCCTTGGTTAAAATTATTAAACCTCTTACAAGTGTTGAATGTACATGTATAAGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

139

Amino Acids

15.53

Weight (kDa)

9.51

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	17 - 97	9e-22	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	321
AfaI	GTAC	2 cut(s)	192, 400
AfiI	CCNNNNNNNGG	1 cut(s)	311
AflIII	ACRYGT	1 cut(s)	401
AgsI	TTSAA	2 cut(s)	250, 395
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	247, 279
AluBI	AGCT	3 cut(s)	23, 350, 411
AluI	AGCT	3 cut(s)	23, 350, 411
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	321
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	82
AvaI	CYCGRG	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	179
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	304
BccI	CCATC	2 cut(s)	35, 221
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	24, 272
BfoI	RGCGCY	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	305
BmgT120I	GGNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	265
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	3 cut(s)	92, 130, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	180, 210
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	93, 131, 322
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	321
Bsp1407I	TGTACA	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	162
BspEI	TCCGGA	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	360
Bst2BI	CACGAG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	144
Bst6I	CTCTTC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	149
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	405
BstSCI	CCNGG	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	191, 399
CviAII	CATG	1 cut(s)	402
CviJI	RGCY	3 cut(s)	23, 350, 411
CviKI_1	RGCY	3 cut(s)	23, 350, 411
CviQI	GTAC	2 cut(s)	191, 399
DdeI	CTNAG	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	360
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	1 cut(s)	405
FaiI	YATR	6 cut(s)	17, 80, 102, 291, 403, 407
FatI	CATG	1 cut(s)	401
FspBI	CTAG	2 cut(s)	24, 272
GlaI	GCGC	1 cut(s)	127
HaeII	RGCGCY	1 cut(s)	129
HapII	CCGG	3 cut(s)	93, 131, 322
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	405
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HindIII	AAGCTT	2 cut(s)	348, 409
HinfI	GANTC	2 cut(s)	315, 356
HpaII	CCGG	3 cut(s)	93, 131, 322
HphI	GGTGA	1 cut(s)	82
Hpy188I	TCNGA	3 cut(s)	152, 218, 333
Hpy188III	TCNNGA	3 cut(s)	272, 305, 322
HpyAV	CCTTC	3 cut(s)	217, 244, 328
HpyCH4III	ACNGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	1 cut(s)	405
HspAI	GCGC	1 cut(s)	126
Kpn2I	TCCGGA	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	133, 307
LpnPI	CCDG	5 cut(s)	100, 106, 127, 144, 335
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	24, 272
MaeIII	GTNAC	5 cut(s)	26, 88, 109, 138, 144
MboII	GAAGA	3 cut(s)	180, 267, 310
MfeI	CAATTG	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	304
MluCI	AATT	2 cut(s)	279, 369
MlyI	GAGTC	2 cut(s)	309, 365
MmeI	TCCRAC	2 cut(s)	39, 223
MnlI	CCTC	3 cut(s)	305, 318, 390
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	2 cut(s)	366, 375
MspI	CCGG	3 cut(s)	93, 131, 322
MspR9I	CCNGG	1 cut(s)	115
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	115
NlaIII	CATG	1 cut(s)	405
NmuCI	GTSAC	3 cut(s)	88, 109, 144
NspI	RCATGY	1 cut(s)	405
PciI	ACATGT	1 cut(s)	401
PleI	GAGTC	2 cut(s)	309, 364
PpsI	GAGTC	2 cut(s)	309, 364
PscI	ACATGT	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	192, 400
RsaNI	GTAC	2 cut(s)	191, 399
SaqAI	TTAA	2 cut(s)	366, 375
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	2 cut(s)	309, 365
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	304
SetI	ASST	6 cut(s)	25, 33, 116, 352, 382, 413
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	279, 369
SspMI	CTAG	2 cut(s)	24, 272
StyD4I	CCNGG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	144
TasI	AATT	2 cut(s)	279, 369
TatI	WGTACW	2 cut(s)	190, 398
Tru1I	TTAA	2 cut(s)	366, 375
Tru9I	TTAA	2 cut(s)	366, 375
TseFI	GTSAC	3 cut(s)	88, 109, 144
Tsp45I	GTSAC	3 cut(s)	88, 109, 144
TspDTI	ATGAA	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	271
XceI	RCATGY	1 cut(s)	405
XspI	CTAG	2 cut(s)	24, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.