RLG00000019949

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001575
Physical Location & Seq
Forward (+)
58993396 .. 58994342
947 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019949

Sequence Viewer

Length: 588 bp
ATGGAGAGTGGGAAGGACAAAGCAAGTGGGAAGAGGAAGACCATAGTATTGGGACCATGGGGAGGTAATGGCGGAAACGTTTGGGATGATGGGCTCTATCATGGGGTGAGAGAAATCACTCTCGTCTATGGCCATTGCATCGACTCCATTGTTGTGGTGTATGATAAGAACGGTAAGCCGGTCACATCAGAAAAGCATGGTGGTCTTGGAGGCAATCGAACAGCCGAGATAAAGTTGCAGTATCCCGATGAGTTCCTAGTGAGTGTGAGCGGACACTATTGTCCGGTGGTGTATGGTGGCAGCCCGGTGATCCGGTCACTCAAATTTGAGAGTAATAGAAGAACATTTGGACCCTTTGGAGTTGAAGAAGGCACACCCTTTACTTTCACTATGGATGGAGGCAAAATTGTGGGCTTAAAAGGAAGGGGTGGTTGGTACCTAGATGCAATTGGGTTTCACGTAGACCATGCTCCCAAAGGAAAGCTCTTTCGGAGAGTTCAGAAAAGTTTCAGAAGGCTTGCCAGCACGGTTTCAAAACCCCTAGCCACCAAAGAAACTGAAAAGACTACTGCTGAGAGTCGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

196

Amino Acids

21.3

Weight (kDa)

9.56

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 17 - 153 1.3e-44 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 462
AciI CCGC 2 cut(s) 72, 270
AclI AACGTT 1 cut(s) 78
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 1 cut(s) 130
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 2 cut(s) 365, 534
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 1 cut(s) 484
AluI AGCT 1 cut(s) 484
AlwI GGATC 1 cut(s) 304
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 53, 350
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 118, 319
AvaII GGWCC 2 cut(s) 53, 350
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 83, 389
BciVI GTATCC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 305
BfaI CTAG 3 cut(s) 257, 440, 542
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 2 cut(s) 53, 350
BmgT120I GGNCC 2 cut(s) 53, 350
BmiI GGNNCC 3 cut(s) 54, 352, 437
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 147, 433
BpiI GAAGAC 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 460
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 2 cut(s) 283, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 178
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 91, 400
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 564
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 1 cut(s) 132
BshNI GGYRCC 1 cut(s) 435
BsiSI CCGG 4 cut(s) 179, 284, 305, 313
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 72, 270
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 54, 352, 437
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 435
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 173, 529
Bst6I CTCTTC 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 519, 523
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 91, 400
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 2 cut(s) 49, 154
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 91, 400
Cac8I GCNNGC 2 cut(s) 519, 523
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 53, 350
Csp6I GTAC 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 4 cut(s) 57, 101, 197, 467
CviJI RGCY 9 cut(s) 94, 132, 178, 224, 303, 414, 484, 517, 545
CviKI_1 RGCY 9 cut(s) 94, 132, 178, 224, 303, 414, 484, 517, 545
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 573
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 53, 350
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 4 cut(s) 60, 104, 200, 470
FaiI YATR 9 cut(s) 44, 58, 102, 129, 162, 198, 294, 392, 468
FaqI GGGAC 1 cut(s) 66
FatI CATG 4 cut(s) 56, 100, 196, 466
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 98, 407
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 3 cut(s) 257, 440, 542
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 132
HapII CCGG 4 cut(s) 179, 284, 305, 313
Hin1II CATG 4 cut(s) 60, 104, 200, 470
HinfI GANTC 2 cut(s) 143, 577
HpaII CCGG 4 cut(s) 179, 284, 305, 313
HphI GGTGA 2 cut(s) 118, 319
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 4 cut(s) 190, 492, 501, 512
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 4 cut(s) 7, 362, 417, 507
HpyCH4III ACNGT 2 cut(s) 173, 529
HpyCH4IV ACGT 2 cut(s) 78, 459
HpyCH4V TGCA 3 cut(s) 138, 238, 446
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 2 cut(s) 78, 459
Hsp92II CATG 4 cut(s) 60, 104, 200, 470
KpnI GGTACC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 5 cut(s) 192, 297, 318, 326, 535
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 147, 433
MaeI CTAG 3 cut(s) 257, 440, 542
MaeII ACGT 2 cut(s) 78, 459
MaeIII GTNAC 2 cut(s) 181, 315
MalI GATC 1 cut(s) 311
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 309
MboII GAAGA 4 cut(s) 43, 49, 351, 377
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 4 cut(s) 323, 405, 447, 583
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 2 cut(s) 137, 586
MnlI CCTC 4 cut(s) 27, 56, 203, 392
Mox20I TGGCCA 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 1 cut(s) 132
MseI TTAA 2 cut(s) 416, 586
MslI CAYNNNNRTG 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 4 cut(s) 179, 284, 305, 313
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 447
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 56
NdeII GATC 1 cut(s) 309
NlaIII CATG 4 cut(s) 60, 104, 200, 470
NlaIV GGNNCC 3 cut(s) 54, 352, 437
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 181, 315
PdmI GAANNNNTTC 1 cut(s) 506
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 2 cut(s) 137, 585
PpsI GAGTC 2 cut(s) 137, 585
Ppu21I YACGTR 1 cut(s) 460
Psp1406I AACGTT 1 cut(s) 78
PspN4I GGNNCC 3 cut(s) 54, 352, 437
PspPI GGNCC 2 cut(s) 53, 350
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 416, 586
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 53, 350
SchI GAGTC 2 cut(s) 137, 586
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 96
SetI ASST 5 cut(s) 67, 81, 441, 462, 486
SfaNI GCATC 2 cut(s) 147, 433
SinI GGWCC 2 cut(s) 53, 350
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 4 cut(s) 323, 405, 447, 583
SsiI CCGC 2 cut(s) 72, 270
SspMI CTAG 3 cut(s) 257, 440, 542
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 173, 529
TaiI ACGT 2 cut(s) 81, 462
TaqI TCGA 3 cut(s) 141, 217, 580
TasI AATT 4 cut(s) 323, 405, 447, 583
Tru1I TTAA 2 cut(s) 416, 586
Tru9I TTAA 2 cut(s) 416, 586
TseFI GTSAC 2 cut(s) 181, 315
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 2 cut(s) 181, 315
VpaK11BI GGWCC 2 cut(s) 53, 350
XapI RAATTY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 3 cut(s) 257, 440, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.