FvH4_6g32850

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001575
Physical Location & Seq
Forward (+)
25928272 .. 25929549
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32850.t1

Sequence Viewer

Length: 579 bp
ATGGACAGTGGGAAGGACAATTCAGGTGGGAAGAGGAAGACCATAATATTGGGACCATGGGGAGGCAACGGTGGAAACGATTGGGATGATGGGCTCTATAATGGGGTGAGAGAAATCACTCTCGTCTATGGCCATTGCATCGACTCCATTGTTGTAGTATATGATAAGAACGGTAAGCCAGCTACATCAGAAAAGCATGGTGGTCTTGGAGGCAATCGAACAGCCGAGATAAAGTTGCAGTACCCTGATGAGTTCCTAGTGAGTGTGAGCGGACACTATTGTCCGGTGGTGTATGGTGGCAGCCCGGTGATCCGGTCACTGAAATTTGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTTGAAGAAGGCACACCCTTTACTTTCACAGTGGATGGAGGCAAAATTGTTGGCTTAAAAGGAAGAGGTGGTTGGTACCTAGATGCAATTGGGTTTCACGTATACCATGCTCCTAAAGGACAGCTCTTTCGGAGAGTTCAGAAAAGTTTCCGAAGGCTTGCCAGCACGGTCTCAAAACCTCCGGCCACCAAAGAAACCGAAAAGGCTACTCTGCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

193

Amino Acids

20.92

Weight (kDa)

9.49

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 17 - 153 3.8e-44 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 462
AciI CCGC 1 cut(s) 270
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 2 cut(s) 130, 543
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 2 cut(s) 242, 437
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 2 cut(s) 182, 484
AluI AGCT 2 cut(s) 182, 484
Alw26I GTCTC 1 cut(s) 535
AlwI GGATC 1 cut(s) 304
AoxI GGCC 2 cut(s) 130, 543
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 323
ArsI GACNNNNNNTTYG 2 cut(s) 471, 503
Asp700I GAANNNNTTC 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 435
AspLEI GCGC 1 cut(s) 576
AspS9I GGNCC 2 cut(s) 53, 350
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 118, 319
AvaII GGWCC 2 cut(s) 53, 350
BalI TGGCCA 1 cut(s) 132
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 83, 389
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 535
BfaI CTAG 2 cut(s) 257, 440
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 305
Bme18I GGWCC 2 cut(s) 53, 350
BmgT120I GGNCC 2 cut(s) 53, 350
BmiI GGNNCC 2 cut(s) 54, 437
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 2 cut(s) 147, 433
BpiI GAAGAC 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 1 cut(s) 56
BsaWI WCCGGW 2 cut(s) 283, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 2 cut(s) 91, 400
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 2 cut(s) 132, 545
BshNI GGYRCC 1 cut(s) 435
BsiSI CCGG 4 cut(s) 284, 305, 313, 542
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 2 cut(s) 132, 545
Bso31I GGTCTC 1 cut(s) 535
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 1 cut(s) 270
BspANI GGCC 2 cut(s) 132, 545
BspLI GGNNCC 2 cut(s) 54, 437
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 309
BssNAI GTATAC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 56
Bst1107I GTATAC 1 cut(s) 463
Bst4CI ACNGT 5 cut(s) 8, 71, 173, 391, 529
Bst6I CTCTTC 2 cut(s) 26, 418
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 3 cut(s) 180, 519, 523
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 91, 400
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 535
BstMBI GATC 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 49
BstZ17I GTATAC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 132, 545
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 91, 400
BtsIMutI CAGTG 3 cut(s) 13, 317, 396
Cac8I GCNNGC 3 cut(s) 180, 519, 523
CfoI GCGC 1 cut(s) 576
Cfr13I GGNCC 2 cut(s) 53, 350
Csp6I GTAC 2 cut(s) 241, 436
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 3 cut(s) 57, 197, 467
CviQI GTAC 2 cut(s) 241, 436
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 130, 543
Eam1104I CTCTTC 2 cut(s) 26, 418
EarI CTCTTC 2 cut(s) 26, 418
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 535
Eco47I GGWCC 2 cut(s) 53, 350
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 60, 200, 470
FaqI GGGAC 1 cut(s) 66
FatI CATG 3 cut(s) 56, 196, 466
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 98, 407
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 257, 440
GlaI GCGC 1 cut(s) 575
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 132, 545
HapII CCGG 4 cut(s) 284, 305, 313, 542
HhaI GCGC 1 cut(s) 576
Hin1II CATG 3 cut(s) 60, 200, 470
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HinfI GANTC 1 cut(s) 143
HpaII CCGG 4 cut(s) 284, 305, 313, 542
HphI GGTGA 2 cut(s) 118, 319
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 4 cut(s) 190, 492, 501, 512
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 3 cut(s) 7, 362, 507
HpyCH4III ACNGT 5 cut(s) 8, 71, 173, 391, 529
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 3 cut(s) 138, 238, 446
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 3 cut(s) 60, 200, 470
HspAI GCGC 1 cut(s) 574
KpnI GGTACC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 8 cut(s) 9, 192, 258, 297, 318, 326, 535, 555
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 147, 433
MaeI CTAG 2 cut(s) 257, 440
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 315
MalI GATC 1 cut(s) 311
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 309
MboII GAAGA 5 cut(s) 43, 49, 351, 377, 435
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 132
MluCI AATT 4 cut(s) 19, 323, 405, 447
MluNI TGGCCA 1 cut(s) 132
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 6 cut(s) 27, 56, 203, 392, 419, 549
Mox20I TGGCCA 1 cut(s) 132
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 1 cut(s) 132
MseI TTAA 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 132
MspI CCGG 4 cut(s) 284, 305, 313, 542
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 447
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 56
NdeII GATC 1 cut(s) 309
NlaIII CATG 3 cut(s) 60, 200, 470
NlaIV GGNNCC 2 cut(s) 54, 437
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 315
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 506
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Ppu21I YACGTR 1 cut(s) 460
PspN4I GGNNCC 2 cut(s) 54, 437
PspPI GGNCC 2 cut(s) 53, 350
RsaI GTAC 2 cut(s) 242, 437
RsaNI GTAC 2 cut(s) 241, 436
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 53, 350
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 96
SetI ASST 7 cut(s) 28, 184, 430, 441, 462, 486, 541
SfaNI GCATC 2 cut(s) 147, 433
SinI GGWCC 2 cut(s) 53, 350
Sse9I AATT 4 cut(s) 19, 323, 405, 447
SsiI CCGC 1 cut(s) 270
SspI AATATT 1 cut(s) 48
SspMI CTAG 2 cut(s) 257, 440
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 5 cut(s) 8, 71, 173, 391, 529
TaiI ACGT 1 cut(s) 462
TaqI TCGA 2 cut(s) 141, 217
TasI AATT 4 cut(s) 19, 323, 405, 447
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TscAI CASTG 3 cut(s) 13, 324, 396
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 1 cut(s) 315
TspRI CASTG 3 cut(s) 13, 324, 396
VpaK11BI GGWCC 2 cut(s) 53, 350
XapI RAATTY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 2 cut(s) 257, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.