pycom09g11410

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001575
Physical Location & Seq
Reverse (-)
9647806 .. 9648774
969 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11410.3

Sequence Viewer

Length: 570 bp
ATGCTTCCATTAAACACCAAGGAAGATGGCAAGGAGCAAGCAGGCGAGAAGAGGAAGATCATGGAAGTAGGACCATGGGGAGGAAATGGTGGAACTCCTTGGGACGACGGCATCTACAATGGCGTGAGAGAAATCACGCTTGTTTATGGCCACTGCATCGACTCCATCACCGTGGTGTATGATAAAAACGGCACGCCTTTCAAAGCTGAAACGCGTGGAGGTCGCGGAGGCAATCAAACCGCGGAGATAAAGCTGCAGTACCCCGATGAGTACATAGTCAGTGTGACCGGGCACTATGGCACGATGGTGTATGGCGGCACCCCTATCATCCGTTCACTTAAATTTCAGAGCAATCGAAGAACATTCGGACCATTTGGAATGGATGAAGGCACACCGTTTACTTACACTCTGGATCGAAGCAAAATTGTTGGCTTGAAGGGAAGACATGGTTGGTACATAGATGCCATTGGGTTTCATGTATCCCCTGCCCCAGCAAGACTCTTTGACAGAGTTCAGAAGAGTTTCAGAAGGCTCGGGAGCTCAGTTACCTTCGGAGCCCAGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

190

Amino Acids

20.96

Weight (kDa)

9.43

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 317
AccII CGCG 3 cut(s) 214, 225, 242
AciI CCGC 4 cut(s) 225, 240, 242, 315
AclWI GGATC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 341
AfaI GTAC 3 cut(s) 260, 272, 455
AfiI CCNNNNNNNGG 1 cut(s) 80
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 2 cut(s) 202, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
AleI CACNNNNGTG 2 cut(s) 173, 305
AluBI AGCT 3 cut(s) 206, 253, 540
AluI AGCT 3 cut(s) 206, 253, 540
Alw21I GWGCWC 1 cut(s) 542
AlwI GGATC 1 cut(s) 420
Ama87I CYCGRG 1 cut(s) 533
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 521
AspS9I GGNCC 2 cut(s) 71, 368
AsuC2I CCSGG 1 cut(s) 289
AsuHPI GGTGA 1 cut(s) 160
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 71, 368
BaeGI GKGCMC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 317
BanII GRGCYC 2 cut(s) 542, 559
BbsI GAAGAC 1 cut(s) 448
Bbv12I GWGCWC 1 cut(s) 542
BbvI GCAGC 1 cut(s) 240
BccI CCATC 3 cut(s) 20, 173, 298
BceAI ACGGC 2 cut(s) 124, 205
BciVI GTATCC 1 cut(s) 490
BcnI CCSGG 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 254
BfuI GTATCC 1 cut(s) 490
BisI GCNGC 2 cut(s) 254, 316
BlsI GCNGC 2 cut(s) 255, 317
Bme1390I CCNGG 1 cut(s) 289
Bme18I GGWCC 2 cut(s) 71, 368
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 71, 368
BmiI GGNNCC 2 cut(s) 319, 556
BmrFI CCNGG 1 cut(s) 289
BmsI GCATC 3 cut(s) 120, 165, 451
BpiI GAAGAC 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 289
BsaJI CCNNGG 5 cut(s) 18, 74, 98, 171, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 80
BseDI CCNNGG 5 cut(s) 18, 74, 98, 171, 240
BseGI GGATG 2 cut(s) 327, 388
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 555
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 1 cut(s) 240
BseYI CCCAGC 1 cut(s) 490
Bsh1236I CGCG 3 cut(s) 214, 225, 242
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 317
BsiHKAI GWGCWC 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 1 cut(s) 288
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 294, 542, 559
Bsp143I GATC 2 cut(s) 57, 412
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 4 cut(s) 225, 240, 242, 315
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 554
BspFNI CGCG 3 cut(s) 214, 225, 242
BspLI GGNNCC 2 cut(s) 319, 556
BspMAI CTGCAG 1 cut(s) 258
BspPI GGATC 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 317
BssECI CCNNGG 5 cut(s) 18, 74, 98, 171, 240
BssMI GATC 2 cut(s) 57, 412
BssT1I CCWWGG 3 cut(s) 18, 74, 98
Bst4CI ACNGT 2 cut(s) 172, 396
Bst6I CTCTTC 2 cut(s) 44, 512
BstC8I GCNNGC 3 cut(s) 39, 43, 194
BstDEI CTNAG 1 cut(s) 541
BstDSI CCRYGG 3 cut(s) 74, 171, 240
BstF5I GGATG 2 cut(s) 327, 388
BstFNI CGCG 3 cut(s) 214, 225, 242
BstKTI GATC 2 cut(s) 60, 415
BstMBI GATC 2 cut(s) 57, 412
BstSCI CCNGG 1 cut(s) 287
BstSFI CTRYAG 1 cut(s) 254
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 3 cut(s) 214, 225, 242
BstV1I GCAGC 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 172
BsuI GTATCC 1 cut(s) 490
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 3 cut(s) 74, 171, 240
BtsCI GGATG 2 cut(s) 327, 388
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 286
Cac8I GCNNGC 3 cut(s) 39, 43, 194
Cfr13I GGNCC 2 cut(s) 71, 368
Cfr42I CCGCGG 1 cut(s) 243
Csp6I GTAC 3 cut(s) 259, 271, 454
CviAII CATG 4 cut(s) 61, 75, 446, 476
CviJI RGCY 7 cut(s) 150, 206, 253, 432, 532, 540, 557
CviKI_1 RGCY 7 cut(s) 150, 206, 253, 432, 532, 540, 557
CviQI GTAC 3 cut(s) 259, 271, 454
DdeI CTNAG 1 cut(s) 541
DpnI GATC 2 cut(s) 59, 414
DpnII GATC 2 cut(s) 57, 412
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 44, 512
EarI CTCTTC 2 cut(s) 44, 512
Ecl136II GAGCTC 1 cut(s) 540
Eco130I CCWWGG 3 cut(s) 18, 74, 98
Eco24I GRGCYC 2 cut(s) 542, 559
Eco47I GGWCC 2 cut(s) 71, 368
Eco53kI GAGCTC 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 533
EcoICRI GAGCTC 1 cut(s) 540
EcoT14I CCWWGG 3 cut(s) 18, 74, 98
EcoT38I GRGCYC 2 cut(s) 542, 559
ErhI CCWWGG 3 cut(s) 18, 74, 98
FaeI CATG 4 cut(s) 64, 78, 449, 479
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 60, 74, 445, 475
Fnu4HI GCNGC 2 cut(s) 254, 316
FokI GGATG 2 cut(s) 314, 395
FriOI GRGCYC 2 cut(s) 542, 559
Fsp4HI GCNGC 2 cut(s) 254, 316
GluI GCNGC 2 cut(s) 254, 316
GsaI CCCAGC 1 cut(s) 494
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 288
Hin1II CATG 4 cut(s) 64, 78, 449, 479
HinfI GANTC 2 cut(s) 161, 498
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 160
Hpy166II GTNNAC 2 cut(s) 335, 399
Hpy188I TCNGA 5 cut(s) 348, 368, 516, 527, 554
Hpy188III TCNNGA 2 cut(s) 410, 535
Hpy8I GTNNAC 2 cut(s) 335, 399
Hpy99I CGWCG 1 cut(s) 110
HpyAV CCTTC 4 cut(s) 380, 430, 522, 559
HpyCH4III ACNGT 2 cut(s) 172, 396
HpyCH4V TGCA 2 cut(s) 156, 256
HpyF3I CTNAG 1 cut(s) 541
Hsp92II CATG 4 cut(s) 64, 78, 449, 479
KspI CCGCGG 1 cut(s) 243
Kzo9I GATC 2 cut(s) 57, 412
LmnI GCTCC 3 cut(s) 34, 537, 554
LpnPI CCDG 5 cut(s) 27, 301, 395, 498, 504
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 3 cut(s) 120, 165, 451
MaeIII GTNAC 2 cut(s) 283, 544
MalI GATC 2 cut(s) 59, 414
MboI GATC 2 cut(s) 57, 412
MboII GAAGA 6 cut(s) 35, 61, 67, 369, 453, 529
MhlI GDGCHC 3 cut(s) 294, 542, 559
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 341, 423
MluI ACGCGT 1 cut(s) 212
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 2 cut(s) 155, 492
MnlI CCTC 4 cut(s) 45, 74, 212, 221
Mox20I TGGCCA 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 521
MscI TGGCCA 1 cut(s) 150
MseI TTAA 2 cut(s) 11, 339
MslI CAYNNNNRTG 3 cut(s) 170, 173, 305
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 289
MvnI CGCG 3 cut(s) 214, 225, 242
NciI CCSGG 1 cut(s) 289
NcoI CCATGG 1 cut(s) 74
NdeII GATC 2 cut(s) 57, 412
NlaIII CATG 4 cut(s) 64, 78, 449, 479
NlaIV GGNNCC 2 cut(s) 319, 556
NmuCI GTSAC 1 cut(s) 283
OliI CACNNNNGTG 2 cut(s) 173, 305
PdmI GAANNNNTTC 1 cut(s) 521
PkrI GCNGC 2 cut(s) 255, 317
PleI GAGTC 2 cut(s) 155, 492
PpsI GAGTC 2 cut(s) 155, 492
Psp124BI GAGCTC 1 cut(s) 542
PspFI CCCAGC 1 cut(s) 490
PspN4I GGNNCC 2 cut(s) 319, 556
PspPI GGNCC 2 cut(s) 71, 368
PstI CTGCAG 1 cut(s) 258
RsaI GTAC 3 cut(s) 260, 272, 455
RsaNI GTAC 3 cut(s) 259, 271, 454
RseI CAYNNNNRTG 3 cut(s) 170, 173, 305
SacI GAGCTC 1 cut(s) 542
SacII CCGCGG 1 cut(s) 243
SaqAI TTAA 2 cut(s) 11, 339
SatI GCNGC 2 cut(s) 254, 316
Sau3AI GATC 2 cut(s) 57, 412
Sau96I GGNCC 2 cut(s) 71, 368
SchI GAGTC 2 cut(s) 155, 492
ScrFI CCNGG 1 cut(s) 289
SduI GDGCHC 3 cut(s) 294, 542, 559
SetI ASST 5 cut(s) 208, 223, 255, 542, 551
SfaNI GCATC 3 cut(s) 120, 165, 451
SfcI CTRYAG 1 cut(s) 254
Sfr303I CCGCGG 1 cut(s) 243
SgrBI CCGCGG 1 cut(s) 243
SinI GGWCC 2 cut(s) 71, 368
SmiMI CAYNNNNRTG 3 cut(s) 170, 173, 305
Sse9I AATT 2 cut(s) 341, 423
SsiI CCGC 4 cut(s) 225, 240, 242, 315
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 1 cut(s) 287
StyI CCWWGG 3 cut(s) 18, 74, 98
TaaI ACNGT 2 cut(s) 172, 396
TaqI TCGA 3 cut(s) 159, 355, 415
TasI AATT 2 cut(s) 341, 423
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 318
Tru1I TTAA 2 cut(s) 11, 339
Tru9I TTAA 2 cut(s) 11, 339
TscAI CASTG 2 cut(s) 158, 286
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 2 cut(s) 399, 464
TspGWI ACGGA 1 cut(s) 320
TspRI CASTG 2 cut(s) 158, 286
VpaK11BI GGWCC 2 cut(s) 71, 368
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.