pycom09g11400

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0001575
Physical Location & Seq
Reverse (-)
9629224 .. 9629866
643 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g11400.1

Sequence Viewer

Length: 540 bp
ATGGAAGTAGGACCATGGGGAGGAAATGGTGGAACTCCTTGGGACGACGGCATCTACAATGGCGTGAGAGAAATCACGCTTGTTTATGGCCACTGCATCGACTCCATCACCGTGGCGTATGATAAAAACGGCAAGCCTTTCAAAGCTGAAATGCATGGAGGTCACGGAGGCACTCAAACCGCAGAGATAAAGCTGCAGTACCCCGACGAGTACATAGTCAGTGTGACCGGGCACTATTGTACGATGGTGGATGCCGGCATCTATTCCCCTATCATGCGTTCGCTTAAATTTCAGAGCAATCGAAGAACATTCGGACCATTTGGAATGGATGAAGGCACACCGTTTACTTACACTCTGGATGGAGGCAAAATTGTTGGCTTGAAGGGAAGAGATGGTTTATACATAGATGCCATTGGGTTTCATGTATCTCCTGCCCCAGCAAGACTCTGTGACAGAGTTCAGAAGAGTTTCAGAAGGCTCGGGTGCTCGGTTACCTGCGGAGCCCAGATAAACTGCAACGACTCGACTGCTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

180

Amino Acids

19.38

Weight (kDa)

6.5

Isoelectric Point (pI)

33.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 3 - 141 2.4e-42 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AciI CCGC 2 cut(s) 180, 498
AcoI YGGCCR 1 cut(s) 88
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 3 cut(s) 200, 212, 241
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 3 cut(s) 142, 382, 534
AluBI AGCT 2 cut(s) 146, 193
AluI AGCT 2 cut(s) 146, 193
Alw21I GWGCWC 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 467
AspS9I GGNCC 2 cut(s) 11, 314
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 1 cut(s) 100
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 11, 314
BaeGI GKGCMC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 90
BanII GRGCYC 1 cut(s) 505
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 180
BccI CCATC 4 cut(s) 113, 238, 353, 386
BceAI ACGGC 2 cut(s) 64, 145
BcgI CGANNNNNNTGC 1 cut(s) 509
BcnI CCSGG 1 cut(s) 229
BfmI CTRYAG 1 cut(s) 194
BfuAI ACCTGC 1 cut(s) 503
BisI GCNGC 1 cut(s) 194
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 2 cut(s) 11, 314
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 11, 314
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 1 cut(s) 229
BmsI GCATC 5 cut(s) 60, 105, 241, 267, 397
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 14, 38, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 254
BseDI CCNNGG 3 cut(s) 14, 38, 111
BseGI GGATG 3 cut(s) 256, 334, 364
BseLI CCNNNNNNNGG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 180
BseYI CCCAGC 1 cut(s) 436
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 479
BsiSI CCGG 2 cut(s) 228, 255
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 234, 488, 505
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 2 cut(s) 180, 498
BspANI GGCC 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 502
BspMAI CTGCAG 1 cut(s) 198
BspMI ACCTGC 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 254
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 3 cut(s) 14, 38, 111
BssT1I CCWWGG 2 cut(s) 14, 38
Bst4CI ACNGT 2 cut(s) 112, 342
Bst6I CTCTTC 2 cut(s) 382, 458
BstC8I GCNNGC 2 cut(s) 134, 256
BstDSI CCRYGG 2 cut(s) 14, 111
BstEII GGTNACC 1 cut(s) 490
BstF5I GGATG 3 cut(s) 256, 334, 364
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 194
BstSLI GKGCMC 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 2 cut(s) 14, 111
BtsCI GGATG 3 cut(s) 256, 334, 364
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 226
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 2 cut(s) 134, 256
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 11, 314
Csp6I GTAC 3 cut(s) 199, 211, 240
CviAII CATG 4 cut(s) 15, 155, 274, 422
CviJI RGCY 7 cut(s) 90, 136, 146, 193, 378, 478, 503
CviKI_1 RGCY 7 cut(s) 90, 136, 146, 193, 378, 478, 503
CviQI GTAC 3 cut(s) 199, 211, 240
EaeI YGGCCR 1 cut(s) 88
Eam1104I CTCTTC 2 cut(s) 382, 458
EarI CTCTTC 2 cut(s) 382, 458
Eco130I CCWWGG 2 cut(s) 14, 38
Eco24I GRGCYC 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 11, 314
Eco88I CYCGRG 1 cut(s) 479
Eco91I GGTNACC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 490
EcoT14I CCWWGG 2 cut(s) 14, 38
EcoT22I ATGCAT 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 505
ErhI CCWWGG 2 cut(s) 14, 38
FaeI CATG 4 cut(s) 18, 158, 277, 425
FaiI YATR 9 cut(s) 16, 87, 120, 156, 215, 275, 400, 404, 423
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 14, 154, 273, 421
Fnu4HI GCNGC 1 cut(s) 194
FokI GGATG 3 cut(s) 263, 341, 371
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 1 cut(s) 194
GluI GCNGC 1 cut(s) 194
GsaI CCCAGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 228, 255
Hin1II CATG 4 cut(s) 18, 158, 277, 425
HinfI GANTC 3 cut(s) 101, 444, 521
HpaII CCGG 2 cut(s) 228, 255
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 4 cut(s) 294, 314, 462, 473
Hpy188III TCNNGA 1 cut(s) 356
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 2 cut(s) 50, 209
HpyAV CCTTC 3 cut(s) 326, 376, 468
HpyCH4III ACNGT 2 cut(s) 112, 342
HpyCH4V TGCA 4 cut(s) 96, 154, 196, 516
Hsp92II CATG 4 cut(s) 18, 158, 277, 425
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 500
LpnPI CCDG 7 cut(s) 241, 268, 341, 444, 450, 508, 518
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 5 cut(s) 60, 105, 241, 267, 397
MaeIII GTNAC 4 cut(s) 161, 223, 449, 490
MboII GAAGA 3 cut(s) 315, 399, 475
MhlI GDGCHC 3 cut(s) 234, 488, 505
MlsI TGGCCA 1 cut(s) 90
MluCI AATT 2 cut(s) 287, 369
MluNI TGGCCA 1 cut(s) 90
MlyI GAGTC 3 cut(s) 95, 438, 515
MnlI CCTC 4 cut(s) 14, 152, 161, 356
Mox20I TGGCCA 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 467
MscI TGGCCA 1 cut(s) 90
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 90
MspI CCGG 2 cut(s) 228, 255
MspR9I CCNGG 1 cut(s) 229
NaeI GCCGGC 1 cut(s) 256
NciI CCSGG 1 cut(s) 229
NcoI CCATGG 1 cut(s) 14
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 4 cut(s) 18, 158, 277, 425
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 3 cut(s) 161, 223, 449
NsiI ATGCAT 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 467
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 3 cut(s) 95, 438, 515
PpsI GAGTC 3 cut(s) 95, 438, 515
PspEI GGTNACC 1 cut(s) 490
PspFI CCCAGC 1 cut(s) 436
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 2 cut(s) 11, 314
PstI CTGCAG 1 cut(s) 198
RsaI GTAC 3 cut(s) 200, 212, 241
RsaNI GTAC 3 cut(s) 199, 211, 240
RseI CAYNNNNRTG 1 cut(s) 110
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 194
Sau96I GGNCC 2 cut(s) 11, 314
SchI GAGTC 3 cut(s) 95, 438, 515
ScrFI CCNGG 1 cut(s) 229
SduI GDGCHC 3 cut(s) 234, 488, 505
SetI ASST 4 cut(s) 148, 163, 195, 497
SfaNI GCATC 5 cut(s) 60, 105, 241, 267, 397
SfcI CTRYAG 1 cut(s) 194
SinI GGWCC 2 cut(s) 11, 314
SmiMI CAYNNNNRTG 1 cut(s) 110
Sse9I AATT 2 cut(s) 287, 369
SsiI CCGC 2 cut(s) 180, 498
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 2 cut(s) 14, 38
TaaI ACNGT 2 cut(s) 112, 342
TaqI TCGA 3 cut(s) 99, 301, 524
TasI AATT 2 cut(s) 287, 369
TatI WGTACW 1 cut(s) 210
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 98, 226
TseFI GTSAC 3 cut(s) 161, 223, 449
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 3 cut(s) 161, 223, 449
TspDTI ATGAA 2 cut(s) 345, 410
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 2 cut(s) 98, 226
VpaK11BI GGWCC 2 cut(s) 11, 314
XapI RAATTY 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.