Rh2AG422700

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001575
Physical Location & Seq
Forward (+)
62678083 .. 62679271
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG422700.1

Sequence Viewer

Length: 588 bp
ATGGAGAGTGGGAAGGACAAAGCAAGTGGGAAGAGGAAGACCATAGTATTGGGACCATGGGGAGGCAATGGCGGAAACGTTTGGGATGATGGGCTCTATCATGGGGTGAGAGAAATCACTGTCGTCTATGGCCATTGCATCGACTCCATTGTTGTGGTGTATGATAAGAACGGTAAGCCGGTCACATCAGAAAAGCATGGTGGTCTTGGAGGCAATCGAACAGCTGAGATAAAGTTGCAGTACCCCGATGAGTTCCTAGTGAGTGTGAGCGGACACTATTGTCCGGTGGTGTATGGTGGCAGCCCGGTGATCCGGTCACTCAAATTTGAGAGTGATAGAAGAACGTTTGGACCATTTGGAGTTGAAGAAGGCACACCCTTTACTTTCACTGTGGATGGAGGCAAAATTGTTGGGTTAAAGGGAAGAGGTGGTTGGTACCTAGATGCAATTGGGTTTCACGTATACCATGCTCCCAAAGCAAAGCTATTTCGTAGAGTTCAGAAAAGTTTCCGAAGGCTTGCCAGCACTGTTTCAAAACCCCTGGCCACCAAAGAAACTGAAAAGACTACTGCTGAGAGTCGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD Jacalin

Protein Analysis

195

Amino Acids

21.32

Weight (kDa)

9.54

Isoelectric Point (pI)

37.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 17 - 153 5e-44 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 279
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AccBSI CCGCTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 462
AciI CCGC 2 cut(s) 72, 270
AclI AACGTT 2 cut(s) 78, 344
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 2 cut(s) 130, 543
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 2 cut(s) 242, 437
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 2 cut(s) 365, 534
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 415, 447
AluBI AGCT 2 cut(s) 224, 484
AluI AGCT 2 cut(s) 224, 484
AlwI GGATC 1 cut(s) 304
AoxI GGCC 2 cut(s) 130, 543
ApeKI GCWGC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 506
Asp718I GGTACC 1 cut(s) 435
AspS9I GGNCC 2 cut(s) 53, 350
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 118, 319
AvaII GGWCC 2 cut(s) 53, 350
BalI TGGCCA 2 cut(s) 132, 545
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 83, 389
BciT130I CCWGG 1 cut(s) 542
BcnI CCSGG 1 cut(s) 305
BfaI CTAG 2 cut(s) 257, 440
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 305, 542
Bme18I GGWCC 2 cut(s) 53, 350
BmgT120I GGNCC 2 cut(s) 53, 350
BmiI GGNNCC 2 cut(s) 54, 437
BmrFI CCNGG 2 cut(s) 305, 542
BmsI GCATC 2 cut(s) 147, 433
BpiI GAAGAC 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 305
BsaAI YACGTR 1 cut(s) 460
BsaJI CCNNGG 2 cut(s) 56, 540
BsaWI WCCGGW 2 cut(s) 283, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 178
Bse3DI GCAATG 2 cut(s) 73, 133
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 56, 540
BseGI GGATG 2 cut(s) 91, 400
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 2 cut(s) 73, 133
BseMII CTCAG 2 cut(s) 216, 564
BseXI GCAGC 1 cut(s) 312
BshFI GGCC 2 cut(s) 132, 545
BshNI GGYRCC 1 cut(s) 435
BsiSI CCGG 4 cut(s) 179, 284, 305, 313
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 2 cut(s) 132, 545
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 2 cut(s) 72, 270
BspANI GGCC 2 cut(s) 132, 545
BspCNI CTCAG 2 cut(s) 217, 565
BspLI GGNNCC 2 cut(s) 54, 437
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 435
BsrBI CCGCTC 1 cut(s) 270
BsrDI GCAATG 2 cut(s) 73, 133
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 2 cut(s) 56, 540
BssMI GATC 1 cut(s) 309
BssNAI GTATAC 1 cut(s) 463
BssT1I CCWWGG 1 cut(s) 56
Bst1107I GTATAC 1 cut(s) 463
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 4 cut(s) 121, 173, 391, 529
Bst6I CTCTTC 2 cut(s) 26, 418
BstBAI YACGTR 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 519, 523
BstDEI CTNAG 2 cut(s) 225, 573
BstDSI CCRYGG 1 cut(s) 56
BstF5I GGATG 2 cut(s) 91, 400
BstKTI GATC 1 cut(s) 312
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNI CCWGG 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 303, 540
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 44
BstXI CCANNNNNNTGG 2 cut(s) 49, 154
BstZ17I GTATAC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 132, 545
BtgI CCRYGG 1 cut(s) 56
BtsCI GGATG 2 cut(s) 91, 400
BtsIMutI CAGTG 3 cut(s) 117, 387, 525
Cac8I GCNNGC 2 cut(s) 519, 523
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 53, 350
Csp6I GTAC 2 cut(s) 241, 436
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 4 cut(s) 57, 101, 197, 467
CviJI RGCY 8 cut(s) 94, 132, 178, 224, 303, 484, 517, 545
CviKI_1 RGCY 8 cut(s) 94, 132, 178, 224, 303, 484, 517, 545
CviQI GTAC 2 cut(s) 241, 436
DdeI CTNAG 2 cut(s) 225, 573
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DrdI GACNNNNNNGTC 1 cut(s) 279
DseDI GACNNNNNNGTC 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 130, 543
Eam1104I CTCTTC 2 cut(s) 26, 418
EarI CTCTTC 2 cut(s) 26, 418
EciI GGCGGA 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 53, 350
EcoRII CCWGG 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 4 cut(s) 60, 104, 200, 470
FaiI YATR 9 cut(s) 44, 58, 102, 129, 162, 198, 294, 463, 468
FaqI GGGAC 1 cut(s) 66
FatI CATG 4 cut(s) 56, 100, 196, 466
FblI GTMKAC 1 cut(s) 462
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 2 cut(s) 98, 407
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 2 cut(s) 257, 440
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 132, 545
HapII CCGG 4 cut(s) 179, 284, 305, 313
Hin1II CATG 4 cut(s) 60, 104, 200, 470
HinfI GANTC 2 cut(s) 143, 577
HpaII CCGG 4 cut(s) 179, 284, 305, 313
HphI GGTGA 2 cut(s) 118, 319
Hpy166II GTNNAC 1 cut(s) 463
Hpy188I TCNGA 3 cut(s) 190, 501, 512
Hpy8I GTNNAC 1 cut(s) 463
HpyAV CCTTC 3 cut(s) 7, 362, 507
HpyCH4III ACNGT 4 cut(s) 121, 173, 391, 529
HpyCH4IV ACGT 3 cut(s) 78, 344, 459
HpyCH4V TGCA 3 cut(s) 138, 238, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 225, 573
HpySE526I ACGT 3 cut(s) 78, 344, 459
Hsp92II CATG 4 cut(s) 60, 104, 200, 470
KpnI GGTACC 1 cut(s) 439
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 475
LpnPI CCDG 7 cut(s) 192, 297, 318, 326, 527, 535, 554
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 147, 433
MaeI CTAG 2 cut(s) 257, 440
MaeII ACGT 3 cut(s) 78, 344, 459
MaeIII GTNAC 2 cut(s) 181, 315
MalI GATC 1 cut(s) 311
MbiI CCGCTC 1 cut(s) 270
MboI GATC 1 cut(s) 309
MboII GAAGA 5 cut(s) 43, 49, 351, 377, 435
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 2 cut(s) 132, 545
MluCI AATT 4 cut(s) 323, 405, 447, 583
MluNI TGGCCA 2 cut(s) 132, 545
MlyI GAGTC 2 cut(s) 137, 586
MnlI CCTC 5 cut(s) 27, 56, 203, 392, 419
Mox20I TGGCCA 2 cut(s) 132, 545
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 2 cut(s) 132, 545
MseI TTAA 2 cut(s) 416, 586
MslI CAYNNNNRTG 1 cut(s) 152
Msp20I TGGCCA 2 cut(s) 132, 545
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 4 cut(s) 179, 284, 305, 313
MspR9I CCNGG 2 cut(s) 305, 542
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 1 cut(s) 476
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 56
NdeII GATC 1 cut(s) 309
NlaIII CATG 4 cut(s) 60, 104, 200, 470
NlaIV GGNNCC 2 cut(s) 54, 437
NmuCI GTSAC 2 cut(s) 181, 315
PdmI GAANNNNTTC 1 cut(s) 506
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 2 cut(s) 137, 585
PpsI GAGTC 2 cut(s) 137, 585
Ppu21I YACGTR 1 cut(s) 460
Psp1406I AACGTT 2 cut(s) 78, 344
Psp6I CCWGG 1 cut(s) 540
PspGI CCWGG 1 cut(s) 540
PspN4I GGNNCC 2 cut(s) 54, 437
PspPI GGNCC 2 cut(s) 53, 350
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 242, 437
RsaNI GTAC 2 cut(s) 241, 436
RseI CAYNNNNRTG 1 cut(s) 152
SaqAI TTAA 2 cut(s) 416, 586
SatI GCNGC 1 cut(s) 301
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 53, 350
SchI GAGTC 2 cut(s) 137, 586
ScrFI CCNGG 2 cut(s) 305, 542
SduI GDGCHC 1 cut(s) 96
SetI ASST 7 cut(s) 81, 226, 347, 430, 441, 462, 486
SfaNI GCATC 2 cut(s) 147, 433
SinI GGWCC 2 cut(s) 53, 350
SmiMI CAYNNNNRTG 1 cut(s) 152
Sse9I AATT 4 cut(s) 323, 405, 447, 583
SsiI CCGC 2 cut(s) 72, 270
SspMI CTAG 2 cut(s) 257, 440
StyD4I CCNGG 2 cut(s) 303, 540
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 4 cut(s) 121, 173, 391, 529
TaiI ACGT 3 cut(s) 81, 347, 462
TaqI TCGA 3 cut(s) 141, 217, 580
TasI AATT 4 cut(s) 323, 405, 447, 583
Tru1I TTAA 2 cut(s) 416, 586
Tru9I TTAA 2 cut(s) 416, 586
TscAI CASTG 3 cut(s) 124, 394, 532
TseFI GTSAC 2 cut(s) 181, 315
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 2 cut(s) 181, 315
TspRI CASTG 3 cut(s) 124, 394, 532
VpaK11BI GGWCC 2 cut(s) 53, 350
XapI RAATTY 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 462
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 2 cut(s) 257, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.