RchiOBHm_Chr7g0225051

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001575
Physical Location & Seq
Forward (+)
47460368 .. 47462259
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20154

Sequence Viewer

Length: 1119 bp
ATGTTCACCACCCCAACCCTCAGCATCTCTTGTACAACTTGCATGCGAGGAGAGGAAGGTTCTAGCGTTAATGAGCTTTCTGGCCGCGGTGGTGGGAAGAACAACAGCTCAGTACGGACGTCGGAACTCTACGGAGGGTTAGCTAGTGGAAGTCCTTGGGATGATGGAATCTATGATGGCGTCAGAGAAATCACTCTGGTTTATGGCCAGTGCATCGACTCCATAAGTGTGGCATATGACAAAGATGGTCAGTTTGTTAAACCCGGAAAGCATGGAGGTGTCGGGGGCGGTCACCTCCATAAGCCCCTTACTACTGTCGAGGTGAAACTGGAGTACCCAGAAGAGTTCCTAGTTGGCGTCAGTGGAAACTCTTGTTCGGTACCCGGGATGGCACCAGAAGTGTTGCGATCACTCAAACTTGAGAGCAATAGAAGGTCATTTGGACCGTTTGGAGTTTTAGTAGGCAATCCCTTTAGTTTCAGAGTACAAGATGGAGAGCAAATTGTTGGCTTGATGGGAAGAAATGGTTGGTACCTAGATGCAATTGGGTTTCATATATCTCCTGCTCCCAAGAGTAAACTCTTTCGGAGAGTCCAACAGAGCTCGATACCGTCAGAACTTTATGGAGGAGTGGCCGGCGGAGATCCTTGGGATGATGGAGTCTATGATGGCGTAAGAGAAATAACACTTGTTTTTGGCCAATGCATCGACTCCATATGTGTGGCATATGATATGAATGATAAGCTTGTTAAAACCGGAAAGCATGGAGGTTATGGGGGCAATCACCTCCACCAAAACCTAAGTACCGTTGAGATAAAGTTGGAATACCCAAGTGAGTTTCTGGTTAGTGTCAGTGGATACTCTTCTTCTGTACCCGGGATGGCACCAGAGGTGTTACGCTCGCTCAAATTTGAGACCAACAAAAGGTCATATGGACCATTTGGAGTTGAAATAGGCACACCATTTACATTCAAGGTAAAAGATGGAGAGAAAATTGTTGGTTTGAAGGGAAGAAATGGTTCGTACCTAGATGCAGTCGGGTTTCATATATCCTATGCTCACAAGAGAAAACGCTTTCGGATAATTCGGAAGTATCTTTCCAAAGTTTTGGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

372

Amino Acids

40.39

Weight (kDa)

8.34

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 43 - 185 1e-33 Jacalin-like lectin domain
Jacalin PF01419 206 - 349 1.7e-37 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
Acc65I GGTACC 2 cut(s) 379, 531
AccB1I GGYRCC 4 cut(s) 379, 391, 531, 883
AccII CGCG 1 cut(s) 87
AciI CCGC 4 cut(s) 85, 87, 288, 639
AclWI GGATC 1 cut(s) 638
AcoI YGGCCR 4 cut(s) 82, 205, 633, 697
AcsI RAATTY 1 cut(s) 908
AcyI GRCGYC 3 cut(s) 119, 180, 357
AfaI GTAC 9 cut(s) 34, 114, 335, 381, 486, 533, 805, 873, 1025
AfiI CCNNNNNNNGG 1 cut(s) 924
AgsI TTSAA 3 cut(s) 950, 973, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 511, 543
AluBI AGCT 5 cut(s) 76, 108, 143, 603, 745
AluI AGCT 5 cut(s) 76, 108, 143, 603, 745
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 1 cut(s) 908
AlwI GGATC 1 cut(s) 638
Ama87I CYCGRG 2 cut(s) 383, 875
AoxI GGCC 4 cut(s) 82, 205, 633, 697
ApoI RAATTY 1 cut(s) 908
Asp700I GAANNNNTTC 1 cut(s) 1018
Asp718I GGTACC 2 cut(s) 379, 531
AspS9I GGNCC 2 cut(s) 443, 935
AsuC2I CCSGG 5 cut(s) 264, 384, 385, 876, 877
AsuHPI GGTGA 3 cut(s) 284, 334, 776
AvaI CYCGRG 2 cut(s) 383, 875
AvaII GGWCC 2 cut(s) 443, 935
BaeI ACNNNNGTAYC 4 cut(s) 317, 350, 787, 820
BalI TGGCCA 2 cut(s) 207, 699
BanI GGYRCC 4 cut(s) 379, 391, 531, 883
BanII GRGCYC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 605
BbvCI CCTCAGC 1 cut(s) 20
BciVI GTATCC 1 cut(s) 851
BcnI CCSGG 5 cut(s) 264, 384, 385, 876, 877
BcoDI GTCTC 1 cut(s) 908
BfaI CTAG 5 cut(s) 63, 144, 350, 536, 1028
BfuI GTATCC 1 cut(s) 851
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
Bme1390I CCNGG 5 cut(s) 264, 384, 385, 876, 877
Bme18I GGWCC 2 cut(s) 443, 935
BmeT110I CYCGRG 2 cut(s) 383, 875
BmgT120I GGNCC 2 cut(s) 443, 935
BmiI GGNNCC 4 cut(s) 381, 393, 533, 885
BmrFI CCNGG 5 cut(s) 264, 384, 385, 876, 877
BmsI GCATC 5 cut(s) 33, 222, 529, 714, 1021
BpmI CTGGAG 1 cut(s) 350
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 440
BpuMI CCSGG 5 cut(s) 264, 384, 385, 876, 877
BsaHI GRCGYC 3 cut(s) 119, 180, 357
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 5 cut(s) 85, 155, 383, 647, 875
BsaWI WCCGGW 1 cut(s) 755
BsaXI ACNNNNNCTCC 2 cut(s) 444, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 924
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 2 cut(s) 208, 333
BseDI CCNNGG 5 cut(s) 85, 155, 383, 647, 875
BseGI GGATG 4 cut(s) 166, 393, 658, 885
BseLI CCNNNNNNNGG 1 cut(s) 924
BseMII CTCAG 2 cut(s) 34, 123
BseNI ACTGG 2 cut(s) 208, 333
BseRI GAGGAG 2 cut(s) 63, 642
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 84, 207, 635, 699
BshNI GGYRCC 4 cut(s) 379, 391, 531, 883
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 2 cut(s) 383, 875
BsiSI CCGG 5 cut(s) 264, 384, 636, 756, 876
BslI CCNNNNNNNGG 1 cut(s) 924
BsmAI GTCTC 1 cut(s) 908
BsnI GGCC 4 cut(s) 84, 207, 635, 699
Bso31I GGTCTC 1 cut(s) 908
BsoBI CYCGRG 2 cut(s) 383, 875
Bsp1286I GDGCHC 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 32
Bsp143I GATC 2 cut(s) 407, 643
BspACI CCGC 4 cut(s) 85, 87, 288, 639
BspANI GGCC 4 cut(s) 84, 207, 635, 699
BspCNI CTCAG 2 cut(s) 33, 122
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 381, 393, 533, 885
BspPI GGATC 1 cut(s) 638
BspT107I GGYRCC 4 cut(s) 379, 391, 531, 883
BspTNI GGTCTC 1 cut(s) 908
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 32
BsrI ACTGG 2 cut(s) 208, 333
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 5 cut(s) 85, 155, 383, 647, 875
BssMI GATC 2 cut(s) 407, 643
BssNI GRCGYC 3 cut(s) 119, 180, 357
BssT1I CCWWGG 2 cut(s) 155, 647
Bst4CI ACNGT 4 cut(s) 316, 447, 612, 808
Bst6I CTCTTC 2 cut(s) 336, 868
BstACI GRCGYC 3 cut(s) 119, 180, 357
BstAUI TGTACA 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 44, 637, 902
BstDEI CTNAG 3 cut(s) 20, 109, 800
BstDSI CCRYGG 1 cut(s) 85
BstEII GGTNACC 1 cut(s) 290
BstF5I GGATG 4 cut(s) 166, 393, 658, 885
BstFNI CGCG 1 cut(s) 87
BstKTI GATC 2 cut(s) 410, 646
BstMAI GTCTC 1 cut(s) 908
BstMBI GATC 2 cut(s) 407, 643
BstNSI RCATGY 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 290
BstSCI CCNGG 5 cut(s) 262, 382, 383, 874, 875
BstUI CGCG 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 3 cut(s) 229, 721, 1108
BstYI RGATCY 1 cut(s) 643
BsuI GTATCC 1 cut(s) 851
BsuRI GGCC 4 cut(s) 84, 207, 635, 699
BtgI CCRYGG 1 cut(s) 85
BtsCI GGATG 4 cut(s) 166, 393, 658, 885
BtsIMutI CAGTG 3 cut(s) 215, 367, 859
Cac8I GCNNGC 3 cut(s) 44, 637, 902
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 2 cut(s) 443, 935
Cfr42I CCGCGG 1 cut(s) 88
Cfr9I CCCGGG 2 cut(s) 383, 875
CseI GACGC 2 cut(s) 169, 346
Csp6I GTAC 9 cut(s) 33, 113, 334, 380, 485, 532, 804, 872, 1024
CviAII CATG 3 cut(s) 43, 272, 764
CviQI GTAC 9 cut(s) 33, 113, 334, 380, 485, 532, 804, 872, 1024
DdeI CTNAG 3 cut(s) 20, 109, 800
DpnI GATC 2 cut(s) 409, 645
DpnII GATC 2 cut(s) 407, 643
EaeI YGGCCR 4 cut(s) 82, 205, 633, 697
Eam1104I CTCTTC 2 cut(s) 336, 868
EarI CTCTTC 2 cut(s) 336, 868
EciI GGCGGA 1 cut(s) 654
Ecl136II GAGCTC 1 cut(s) 603
Eco130I CCWWGG 2 cut(s) 155, 647
Eco24I GRGCYC 1 cut(s) 605
Eco31I GGTCTC 1 cut(s) 908
Eco47I GGWCC 2 cut(s) 443, 935
Eco53kI GAGCTC 1 cut(s) 603
Eco88I CYCGRG 2 cut(s) 383, 875
Eco91I GGTNACC 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 603
EcoO65I GGTNACC 1 cut(s) 290
EcoT14I CCWWGG 2 cut(s) 155, 647
EcoT22I ATGCAT 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 2 cut(s) 155, 647
FaeI CATG 3 cut(s) 46, 275, 767
FatI CATG 3 cut(s) 42, 271, 763
FauNDI CATATG 4 cut(s) 235, 716, 727, 931
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 4 cut(s) 173, 400, 665, 892
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 1 cut(s) 85
FspBI CTAG 5 cut(s) 63, 144, 350, 536, 1028
GluI GCNGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 350
HaeIII GGCC 4 cut(s) 84, 207, 635, 699
HapII CCGG 5 cut(s) 264, 384, 636, 756, 876
HgaI GACGC 2 cut(s) 169, 346
Hin1I GRCGYC 3 cut(s) 119, 180, 357
Hin1II CATG 3 cut(s) 46, 275, 767
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 5 cut(s) 168, 218, 591, 660, 710
HpaII CCGG 5 cut(s) 264, 384, 636, 756, 876
HphI GGTGA 3 cut(s) 284, 334, 776
Hpy166II GTNNAC 2 cut(s) 6, 578
Hpy188I TCNGA 7 cut(s) 124, 185, 482, 588, 616, 1080, 1089
Hpy8I GTNNAC 2 cut(s) 6, 578
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 3 cut(s) 50, 426, 1000
HpyCH4III ACNGT 4 cut(s) 316, 447, 612, 808
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 5 cut(s) 42, 213, 542, 705, 1034
HpyF3I CTNAG 3 cut(s) 20, 109, 800
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 3 cut(s) 119, 180, 357
Hsp92II CATG 3 cut(s) 46, 275, 767
KpnI GGTACC 2 cut(s) 383, 535
KroI GCCGGC 1 cut(s) 635
KroNI GCCGGC 1 cut(s) 637
KspI CCGCGG 1 cut(s) 88
Kzo9I GATC 2 cut(s) 407, 643
LmnI GCTCC 1 cut(s) 571
LweI GCATC 5 cut(s) 33, 222, 529, 714, 1021
MaeI CTAG 5 cut(s) 63, 144, 350, 536, 1028
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 2 cut(s) 290, 894
MalI GATC 2 cut(s) 409, 645
MboI GATC 2 cut(s) 407, 643
MboII GAAGA 6 cut(s) 109, 353, 531, 855, 858, 1023
MfeI CAATTG 1 cut(s) 543
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 1 cut(s) 605
MlsI TGGCCA 2 cut(s) 207, 699
MluCI AATT 5 cut(s) 501, 543, 908, 993, 1083
MluNI TGGCCA 2 cut(s) 207, 699
MlyI GAGTC 4 cut(s) 212, 600, 669, 704
MmeI TCCRAC 3 cut(s) 102, 619, 801
Mox20I TGGCCA 2 cut(s) 207, 699
Mph1103I ATGCAT 1 cut(s) 707
MroNI GCCGGC 1 cut(s) 635
MroXI GAANNNNTTC 1 cut(s) 1018
MscI TGGCCA 2 cut(s) 207, 699
MseI TTAA 3 cut(s) 69, 258, 750
MslI CAYNNNNRTG 3 cut(s) 227, 276, 719
Msp20I TGGCCA 2 cut(s) 207, 699
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 5 cut(s) 264, 384, 636, 756, 876
MspR9I CCNGG 5 cut(s) 264, 384, 385, 876, 877
MunI CAATTG 1 cut(s) 543
MvnI CGCG 1 cut(s) 87
NaeI GCCGGC 1 cut(s) 637
NciI CCSGG 5 cut(s) 264, 384, 385, 876, 877
NdeI CATATG 4 cut(s) 235, 716, 727, 931
NdeII GATC 2 cut(s) 407, 643
NgoMIV GCCGGC 1 cut(s) 635
NlaIII CATG 3 cut(s) 46, 275, 767
NlaIV GGNNCC 4 cut(s) 381, 393, 533, 885
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 1 cut(s) 46
PaeI GCATGC 1 cut(s) 46
PdiI GCCGGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 1018
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 1 cut(s) 86
PleI GAGTC 4 cut(s) 212, 599, 668, 704
PpsI GAGTC 4 cut(s) 212, 599, 668, 704
Psp124BI GAGCTC 1 cut(s) 605
PspEI GGTNACC 1 cut(s) 290
PspN4I GGNNCC 4 cut(s) 381, 393, 533, 885
PspPI GGNCC 2 cut(s) 443, 935
PsuI RGATCY 1 cut(s) 643
RsaI GTAC 9 cut(s) 34, 114, 335, 381, 486, 533, 805, 873, 1025
RsaNI GTAC 9 cut(s) 33, 113, 334, 380, 485, 532, 804, 872, 1024
RseI CAYNNNNRTG 3 cut(s) 227, 276, 719
SacI GAGCTC 1 cut(s) 605
SacII CCGCGG 1 cut(s) 88
SaqAI TTAA 3 cut(s) 69, 258, 750
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 407, 643
Sau96I GGNCC 2 cut(s) 443, 935
SchI GAGTC 4 cut(s) 212, 600, 669, 704
ScrFI CCNGG 5 cut(s) 264, 384, 385, 876, 877
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 5 cut(s) 33, 222, 529, 714, 1021
Sfr303I CCGCGG 1 cut(s) 88
SgrBI CCGCGG 1 cut(s) 88
SinI GGWCC 2 cut(s) 443, 935
SmaI CCCGGG 2 cut(s) 385, 877
SmiMI CAYNNNNRTG 3 cut(s) 227, 276, 719
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
SphI GCATGC 1 cut(s) 46
Sse9I AATT 5 cut(s) 501, 543, 908, 993, 1083
SsiI CCGC 4 cut(s) 85, 87, 288, 639
SspMI CTAG 5 cut(s) 63, 144, 350, 536, 1028
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 5 cut(s) 262, 382, 383, 874, 875
StyI CCWWGG 2 cut(s) 155, 647
TaaI ACNGT 4 cut(s) 316, 447, 612, 808
TaiI ACGT 1 cut(s) 122
TaqI TCGA 4 cut(s) 216, 318, 605, 708
TasI AATT 5 cut(s) 501, 543, 908, 993, 1083
TatI WGTACW 2 cut(s) 32, 484
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 3 cut(s) 69, 258, 750
Tru9I TTAA 3 cut(s) 69, 258, 750
TscAI CASTG 3 cut(s) 215, 367, 859
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 542, 749, 1034
TspGWI ACGGA 2 cut(s) 130, 147
TspMI CCCGGG 2 cut(s) 383, 875
TspRI CASTG 3 cut(s) 215, 367, 859
VpaK11BI GGWCC 2 cut(s) 443, 935
XapI RAATTY 1 cut(s) 908
XceI RCATGY 1 cut(s) 46
XmaI CCCGGG 2 cut(s) 383, 875
XmnI GAANNNNTTC 1 cut(s) 1018
XspI CTAG 5 cut(s) 63, 144, 350, 536, 1028
ZraI GACGTC 1 cut(s) 120
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.