Rw2G034680

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001575
Physical Location & Seq
Forward (+)
57118507 .. 57119448
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034680.1

Sequence Viewer

Length: 516 bp
ATGTACCATGGCGTAAGAGAAATCGCTGTCACTTCTGGTTTATGCATCGACTCAATTCGTGTGGCGTATGATAAAGATGGTGAGCTTGTCACTGCTCATAAGCATGGAGGTGACGGAGGCGGCGCCAATGCTCAGATCAAGCTAGAGTATCCAGATGAGTTCCTAGTGAGTGTTAGTGGACATTGTTTTGGGGCACCCTGGATAGTTGGCGATCCGGTGGTGATACGGCCACTCAAATTTGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTTGAAGTAGGCACACCTTTTACTTTCACAGTTGAAGATGGAGGCCAAATTGTTGGCATGAAGGGAAGAAGTGGTTCGTACATAGATGCAATTGGGCTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAGAGTTAAGGAGGGTCTTAAAAAGCTTTGGCCTTCAAAAGCTTATGACATCTTGATTAAAATCACCAAACCTCTTCAAATTTTTCAATGTACATGTATAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

171

Amino Acids

18.76

Weight (kDa)

9.06

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 2 - 125 7.6e-33 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 122, 193
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 2 cut(s) 236, 486
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 3 cut(s) 5, 353, 499
AflIII ACRYGT 1 cut(s) 500
AgsI TTSAA 5 cut(s) 278, 308, 444, 485, 494
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 4 cut(s) 85, 142, 433, 449
AluI AGCT 4 cut(s) 85, 142, 433, 449
AlwI GGATC 1 cut(s) 206
AoxI GGCC 3 cut(s) 227, 316, 437
ApoI RAATTY 2 cut(s) 236, 486
Asp700I GAANNNNTTC 1 cut(s) 346
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 4 cut(s) 92, 122, 232, 463
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 196
BanI GGYRCC 2 cut(s) 122, 193
BccI CCATC 2 cut(s) 71, 305
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 199
BciVI GTATCC 1 cut(s) 159
BfaI CTAG 2 cut(s) 143, 164
BfoI RGCGCY 1 cut(s) 126
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 2 cut(s) 124, 195
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 54, 349
BsaBI GATNNNNATC 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 7, 197
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bse8I GATNNNNATC 1 cut(s) 467
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 7, 197
BseJI GATNNNNATC 1 cut(s) 467
BseMII CTCAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 196
BshFI GGCC 3 cut(s) 229, 318, 439
BshNI GGYRCC 2 cut(s) 122, 193
BsiSI CCGG 1 cut(s) 215
BsnI GGCC 3 cut(s) 229, 318, 439
Bsp1286I GDGCHC 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 497
Bsp143I GATC 2 cut(s) 135, 211
Bsp19I CCATGG 1 cut(s) 7
BspACI CCGC 1 cut(s) 120
BspANI GGCC 3 cut(s) 229, 318, 439
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 124, 195
BspPI GGATC 1 cut(s) 206
BspT107I GGYRCC 2 cut(s) 122, 193
BsrGI TGTACA 1 cut(s) 497
BssECI CCNNGG 2 cut(s) 7, 197
BssMI GATC 2 cut(s) 135, 211
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 123
BstAUI TGTACA 1 cut(s) 497
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 7
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 2 cut(s) 138, 214
BstMBI GATC 2 cut(s) 135, 211
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 2 cut(s) 504, 514
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 3 cut(s) 229, 318, 439
BtgI CCRYGG 1 cut(s) 7
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
CfoI GCGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 4, 352, 498
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 6 cut(s) 8, 104, 331, 383, 501, 511
CviJI RGCY 8 cut(s) 85, 142, 229, 318, 370, 433, 439, 449
CviKI_1 RGCY 8 cut(s) 85, 142, 229, 318, 370, 433, 439, 449
CviQI GTAC 3 cut(s) 4, 352, 498
DdeI CTNAG 1 cut(s) 132
DinI GGCGCC 1 cut(s) 124
DpnI GATC 2 cut(s) 137, 213
DpnII GATC 2 cut(s) 135, 211
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 47
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 6 cut(s) 11, 107, 334, 386, 504, 514
FatI CATG 6 cut(s) 7, 103, 330, 382, 500, 510
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 2 cut(s) 143, 164
GlaI GCGC 1 cut(s) 124
GluI GCNGC 1 cut(s) 121
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 3 cut(s) 229, 318, 439
HapII CCGG 1 cut(s) 215
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 6 cut(s) 11, 107, 334, 386, 504, 514
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 2 cut(s) 431, 447
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 215
HphI GGTGA 4 cut(s) 92, 122, 232, 463
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 135, 408
Hpy188III TCNNGA 2 cut(s) 152, 460
Hpy8I GTNNAC 1 cut(s) 179
HpyAV CCTTC 2 cut(s) 328, 450
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 45, 362
HpyF3I CTNAG 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 6 cut(s) 11, 107, 334, 386, 504, 514
HspAI GCGC 1 cut(s) 123
KasI GGCGCC 1 cut(s) 122
Kzo9I GATC 2 cut(s) 135, 211
LpnPI CCDG 5 cut(s) 21, 165, 184, 211, 228
LweI GCATC 2 cut(s) 54, 349
MaeI CTAG 2 cut(s) 143, 164
MaeIII GTNAC 3 cut(s) 28, 88, 110
MalI GATC 2 cut(s) 137, 213
MboI GATC 2 cut(s) 135, 211
MboII GAAGA 4 cut(s) 264, 320, 351, 473
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 5 cut(s) 54, 236, 321, 363, 486
Mly113I GGCGCC 1 cut(s) 123
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 5 cut(s) 101, 110, 308, 412, 489
Mph1103I ATGCAT 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 346
MseI TTAA 3 cut(s) 414, 426, 465
MslI CAYNNNNRTG 2 cut(s) 102, 108
MspI CCGG 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 199
MunI CAATTG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 199
NarI GGCGCC 1 cut(s) 123
NcoI CCATGG 1 cut(s) 7
NdeII GATC 2 cut(s) 135, 211
NlaIII CATG 6 cut(s) 11, 107, 334, 386, 504, 514
NlaIV GGNNCC 2 cut(s) 124, 195
NmuCI GTSAC 3 cut(s) 28, 88, 110
NsiI ATGCAT 1 cut(s) 47
NspI RCATGY 2 cut(s) 504, 514
PciI ACATGT 1 cut(s) 500
PdmI GAANNNNTTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 44
PluTI GGCGCC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 44
PscI ACATGT 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 124, 195
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 3 cut(s) 5, 353, 499
RsaNI GTAC 3 cut(s) 4, 352, 498
RseI CAYNNNNRTG 2 cut(s) 102, 108
SaqAI TTAA 3 cut(s) 414, 426, 465
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 2 cut(s) 135, 211
Sau96I GGNCC 1 cut(s) 263
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 1 cut(s) 196
SetI ASST 7 cut(s) 87, 112, 144, 292, 435, 451, 481
SfaNI GCATC 2 cut(s) 54, 349
SfoI GGCGCC 1 cut(s) 124
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 102, 108
Sse9I AATT 5 cut(s) 54, 236, 321, 363, 486
SsiI CCGC 1 cut(s) 120
SspDI GGCGCC 1 cut(s) 122
SspMI CTAG 2 cut(s) 143, 164
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 1 cut(s) 48
TasI AATT 5 cut(s) 54, 236, 321, 363, 486
TatI WGTACW 1 cut(s) 497
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 3 cut(s) 414, 426, 465
Tru9I TTAA 3 cut(s) 414, 426, 465
TscAI CASTG 1 cut(s) 97
TseFI GTSAC 3 cut(s) 28, 88, 110
Tsp45I GTSAC 3 cut(s) 28, 88, 110
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 2 cut(s) 236, 486
XceI RCATGY 2 cut(s) 504, 514
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 2 cut(s) 143, 164
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.