Rroxscaffold_2G00102860

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001575
Physical Location & Seq
Forward (+)
25142662 .. 25149436
6775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102860.1

Sequence Viewer

Length: 954 bp
ATGTTTATCACCCCCACTCTTAGCATCTCTTGCATAACTTGTATGCAGCAGAGGGAGGAAGGTAGCAATAAGGATCATGAATCGCATGGGAAGATAAAGCTCAACGGCTTTGTGCCGGAGAAACCTTATGGAGGAACCGGTGGAGGTCTTTGGGATGATGGTATGTACCATGGCGTAAGAGAAATCACCGTCACTTCTGGTTTATGCATCGACTCAATTCGTGTGGCGTATGATAAAGATGGTGAGCTTGTCAATGCTCAAAAGCATGGAGGTGACGGGGGCGGCGCCAATGCTCAGATCAAGCTAGAGTATCCAGATGAATTCCTAGTGAGTGTTAGTGGACACTGTTTTGGGGCACCCTGGATAGTTGGCAATCCGGTGGTGATACGGTCACTCAAATTCGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTTGAAGAAGGCACGCCTTTTACTTTCACAGTTGAAGATGGAGGCCAAATTGTTGGCATGAAGGGAAGAAGTGGTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAGAGTTAAGGAGGGTCTTAAAAAGCTTTGGCCTTCAAAAGCTTATGACATCTTGATTAAAATCACCAAACCTCTTCAAATTTTTCAATGTACATGTATAAGCATCTACGAATTGTCGAAGGATTGCGCCGACGATAATGACAAAGTGGGCATATATGCTTTGAGGAAGCTCAGTGGTTTGGGTAAGAGGGAATTAAAAAAACTTAATAAGGTAAGTGGGAAAAAAATCTCTAAAAATGGTGTAAATGGACAAAATCCCTTAAGATTAAAGAAAAGCAACCCCTCTATTTCCGCTGTGGACGAGGGGAAAACAATGTTAATGGGGTTTGATGCCCCACGTGGAAAACTTTCCCAAAAATTTCAGATCTTCGATTTTTCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

317

Amino Acids

34.95

Weight (kDa)

9.33

Isoelectric Point (pI)

32.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 41 - 179 5.1e-41 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 284, 355
AciI CCGC 2 cut(s) 282, 861
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 4 cut(s) 320, 398, 648, 926
AcvI CACGTG 1 cut(s) 908
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 3 cut(s) 167, 515, 661
AfiI CCNNNNNNNGG 1 cut(s) 131
AflII CTTAAG 1 cut(s) 829
AflIII ACRYGT 1 cut(s) 662
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 6 cut(s) 440, 470, 606, 647, 656, 948
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AluBI AGCT 6 cut(s) 100, 247, 304, 595, 611, 739
AluI AGCT 6 cut(s) 100, 247, 304, 595, 611, 739
AlwI GGATC 1 cut(s) 81
AoxI GGCC 2 cut(s) 478, 599
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 4 cut(s) 320, 398, 648, 926
AsiGI ACCGGT 1 cut(s) 137
Asp700I GAANNNNTTC 1 cut(s) 916
AspLEI GCGC 2 cut(s) 287, 698
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 5 cut(s) 178, 254, 284, 394, 625
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 2 cut(s) 284, 355
BbrPI CACGTG 1 cut(s) 908
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 152, 233, 467
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 321
BfaI CTAG 2 cut(s) 305, 326
BfoI RGCGCY 1 cut(s) 288
BfrI CTTAAG 1 cut(s) 829
BfuI GTATCC 1 cut(s) 321
BglII AGATCT 1 cut(s) 933
BisI GCNGC 2 cut(s) 47, 283
BlsI GCNGC 2 cut(s) 48, 284
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 3 cut(s) 136, 286, 357
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 5 cut(s) 33, 216, 511, 681, 889
BsaAI YACGTR 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 169, 359
BsaWI WCCGGW 2 cut(s) 137, 376
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 169, 359
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 308, 754
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 480, 601
BshNI GGYRCC 2 cut(s) 284, 355
BshTI ACCGGT 1 cut(s) 137
BsiSI CCGG 3 cut(s) 116, 138, 377
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 2 cut(s) 480, 601
Bsp1286I GDGCHC 1 cut(s) 358
Bsp1407I TGTACA 1 cut(s) 659
Bsp143I GATC 3 cut(s) 73, 297, 933
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 2 cut(s) 282, 861
BspANI GGCC 2 cut(s) 480, 601
BspCNI CTCAG 2 cut(s) 307, 753
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 136, 286, 357
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 2 cut(s) 284, 355
BspTI CTTAAG 1 cut(s) 829
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 169, 359
BssMI GATC 3 cut(s) 73, 297, 933
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 4 cut(s) 190, 347, 390, 466
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 829
BstAPI GCANNNNNTGC 1 cut(s) 30
BstAUI TGTACA 1 cut(s) 659
BstBAI YACGTR 1 cut(s) 908
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 3 cut(s) 20, 294, 740
BstDSI CCRYGG 1 cut(s) 169
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 2 cut(s) 287, 698
BstKTI GATC 3 cut(s) 76, 300, 936
BstMBI GATC 3 cut(s) 73, 297, 933
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 933
BstXI CCANNNNNNTGG 1 cut(s) 488
BstYI RGATCY 1 cut(s) 933
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 480, 601
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 343, 748
Cac8I GCNNGC 1 cut(s) 449
CciI TCATGA 1 cut(s) 76
CfoI GCGC 2 cut(s) 287, 698
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 166, 514, 660
CspAI ACCGGT 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 7 cut(s) 77, 86, 170, 266, 493, 545, 663
CviJI RGCY 9 cut(s) 100, 108, 247, 304, 480, 595, 601, 611, 739
CviKI_1 RGCY 9 cut(s) 100, 108, 247, 304, 480, 595, 601, 611, 739
CviQI GTAC 3 cut(s) 166, 514, 660
DdeI CTNAG 3 cut(s) 20, 294, 740
DinI GGCGCC 1 cut(s) 286
DpnI GATC 3 cut(s) 75, 299, 935
DpnII GATC 3 cut(s) 73, 297, 933
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 425
Eco72I CACGTG 1 cut(s) 908
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 320
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 209
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 7 cut(s) 80, 89, 173, 269, 496, 548, 666
FatI CATG 7 cut(s) 76, 85, 169, 265, 492, 544, 662
Fnu4HI GCNGC 2 cut(s) 47, 283
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 47, 283
FspBI CTAG 2 cut(s) 305, 326
GlaI GCGC 2 cut(s) 286, 697
GluI GCNGC 2 cut(s) 47, 283
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 2 cut(s) 480, 601
HapII CCGG 3 cut(s) 116, 138, 377
HhaI GCGC 2 cut(s) 287, 698
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 7 cut(s) 80, 89, 173, 269, 496, 548, 666
Hin6I GCGC 2 cut(s) 285, 696
HinP1I GCGC 2 cut(s) 285, 696
HindIII AAGCTT 2 cut(s) 593, 609
HinfI GANTC 2 cut(s) 80, 212
HpaII CCGG 3 cut(s) 116, 138, 377
HphI GGTGA 5 cut(s) 178, 254, 284, 394, 625
Hpy166II GTNNAC 2 cut(s) 341, 868
Hpy188I TCNGA 3 cut(s) 297, 570, 933
Hpy188III TCNNGA 4 cut(s) 77, 314, 403, 622
Hpy8I GTNNAC 2 cut(s) 341, 868
Hpy99I CGWCG 1 cut(s) 704
HpyAV CCTTC 5 cut(s) 53, 437, 490, 612, 682
HpyCH4III ACNGT 4 cut(s) 190, 347, 390, 466
HpyCH4IV ACGT 1 cut(s) 907
HpyCH4V TGCA 4 cut(s) 33, 46, 207, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 3 cut(s) 20, 294, 740
HpySE526I ACGT 1 cut(s) 907
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 7 cut(s) 80, 89, 173, 269, 496, 548, 666
HspAI GCGC 2 cut(s) 285, 696
KasI GGCGCC 1 cut(s) 284
Kzo9I GATC 3 cut(s) 73, 297, 933
LpnPI CCDG 7 cut(s) 129, 151, 183, 327, 346, 373, 390
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 5 cut(s) 33, 216, 511, 681, 889
MaeI CTAG 2 cut(s) 305, 326
MaeII ACGT 1 cut(s) 907
MaeIII GTNAC 3 cut(s) 190, 272, 390
MalI GATC 3 cut(s) 75, 299, 935
MboI GATC 3 cut(s) 73, 297, 933
MboII GAAGA 7 cut(s) 103, 426, 452, 482, 513, 635, 928
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 933
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 9 cut(s) 216, 320, 398, 483, 525, 648, 680, 761, 926
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 1 cut(s) 206
Mph1103I ATGCAT 1 cut(s) 209
MroXI GAANNNNTTC 1 cut(s) 916
MseI TTAA 8 cut(s) 576, 588, 627, 764, 774, 830, 836, 887
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 863
MspCI CTTAAG 1 cut(s) 829
MspI CCGG 3 cut(s) 116, 138, 377
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 169
NdeII GATC 3 cut(s) 73, 297, 933
NlaIII CATG 7 cut(s) 80, 89, 173, 269, 496, 548, 666
NlaIV GGNNCC 3 cut(s) 136, 286, 357
NmuCI GTSAC 3 cut(s) 190, 272, 390
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 666
PagI TCATGA 1 cut(s) 76
PciI ACATGT 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 916
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 2 cut(s) 48, 284
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 288
PmaCI CACGTG 1 cut(s) 908
PmlI CACGTG 1 cut(s) 908
PpsI GAGTC 1 cut(s) 206
Ppu21I YACGTR 1 cut(s) 908
PscI ACATGT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 359
PspCI CACGTG 1 cut(s) 908
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 136, 286, 357
PspPI GGNCC 1 cut(s) 425
PsuI RGATCY 1 cut(s) 933
RsaI GTAC 3 cut(s) 167, 515, 661
RsaNI GTAC 3 cut(s) 166, 514, 660
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 8 cut(s) 576, 588, 627, 764, 774, 830, 836, 887
SatI GCNGC 2 cut(s) 47, 283
Sau3AI GATC 3 cut(s) 73, 297, 933
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 358
SfaNI GCATC 5 cut(s) 33, 216, 511, 681, 889
SfoI GGCGCC 1 cut(s) 286
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 829
SmoI CTYRAG 1 cut(s) 829
Sse9I AATT 9 cut(s) 216, 320, 398, 483, 525, 648, 680, 761, 926
SsiI CCGC 2 cut(s) 282, 861
SspDI GGCGCC 1 cut(s) 284
SspMI CTAG 2 cut(s) 305, 326
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 4 cut(s) 190, 347, 390, 466
TaiI ACGT 1 cut(s) 910
TaqI TCGA 4 cut(s) 210, 402, 686, 939
TasI AATT 9 cut(s) 216, 320, 398, 483, 525, 648, 680, 761, 926
TatI WGTACW 1 cut(s) 659
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 8 cut(s) 576, 588, 627, 764, 774, 830, 836, 887
Tru9I TTAA 8 cut(s) 576, 588, 627, 764, 774, 830, 836, 887
TscAI CASTG 2 cut(s) 350, 748
TseFI GTSAC 3 cut(s) 190, 272, 390
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 3 cut(s) 190, 272, 390
TspDTI ATGAA 3 cut(s) 93, 333, 509
TspRI CASTG 2 cut(s) 350, 748
Vha464I CTTAAG 1 cut(s) 829
VpaK11BI GGWCC 1 cut(s) 425
XagI CCTNNNNNAGG 1 cut(s) 129
XapI RAATTY 4 cut(s) 320, 398, 648, 926
XceI RCATGY 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 916
XspI CTAG 2 cut(s) 305, 326
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.