Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Forward (+)

59742406 .. 59743382

Gene Structure 977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51244

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTATCACCAACACTCTTAGCCTCTCTTGCATAACTTGTATGCAGCAGGGAGAGGAAGGTGGCAATAAGGATCATGAATCGCATGGGAAGATAAGGCTCAACGGCTTTGTGCCGGAGAAACTTTATGGAGGAACCGGTGGAGATCTTTGGGATGATGGTATGTACCATGGCGTGAGAGAAATCACTGTCACTTATGGTCAATGCATCGACTCAATTCGTGTGGTGTATGATATAGATGATAAGCTTGTCAATGCTCATAGGCATGGAGGTGACGGAGGCGACGACACTGATCAGATCACGCTAGACTATCCGAATGAGTTTCTAGTGAGTGTTAGCGGACACTATTCAGAGGCGCCCAATGGCGATGCTGTGGTGATATGGTCACTCAAATTCGAGAGCAATAGAAGAACGTTTGGACCATTTGGACATGAACAAGGCGAACTTTTTACTTTCACAGTTGAAGATGGAGACCAAATTGTTGGCATGAAGGGAAGAAGTGGTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAAAGTTAAGGAGGGTCTTAAAAAAGCTTATGACATCTTGGTTAAAATCACCAATCCTCTTCAAATTTTTCAATGTACATGTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

216

Amino Acids

24.12

Weight (kDa)

5.55

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	42 - 177	1.4e-40	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AciI	CCGC	1 cut(s)	339
AclI	AACGTT	1 cut(s)	413
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	392, 627
AcyI	GRCGYC	1 cut(s)	356
AfaI	GTAC	3 cut(s)	167, 509, 640
AflIII	ACRYGT	1 cut(s)	641
AgeI	ACCGGT	1 cut(s)	137
AgsI	TTSAA	3 cut(s)	464, 626, 635
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
AluBI	AGCT	2 cut(s)	247, 590
AluI	AGCT	2 cut(s)	247, 590
Alw26I	GTCTC	1 cut(s)	465
AlwI	GGATC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	2 cut(s)	392, 627
AsiGI	ACCGGT	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	3 cut(s)	284, 388, 604
AvaII	GGWCC	1 cut(s)	419
BanI	GGYRCC	1 cut(s)	355
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	152, 461
BceAI	ACGGC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	2 cut(s)	305, 326
BfoI	RGCGCY	1 cut(s)	359
BglII	AGATCT	1 cut(s)	145
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	2 cut(s)	136, 357
BmsI	GCATC	3 cut(s)	216, 358, 505
BsaHI	GRCGYC	1 cut(s)	356
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	137
BsiSI	CCGG	2 cut(s)	116, 138
BsmAI	GTCTC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	465
Bsp1407I	TGTACA	1 cut(s)	638
Bsp143I	GATC	4 cut(s)	73, 145, 292, 297
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	136, 357
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	465
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	4 cut(s)	73, 145, 292, 297
BssNI	GRCGYC	1 cut(s)	356
BssT1I	CCWWGG	1 cut(s)	169
Bst4CI	ACNGT	2 cut(s)	190, 460
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	356
BstAUI	TGTACA	1 cut(s)	638
BstDEI	CTNAG	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	4 cut(s)	76, 148, 295, 300
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	4 cut(s)	73, 145, 292, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	645
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	186, 288
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	166, 508, 639
CspAI	ACCGGT	1 cut(s)	137
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	8 cut(s)	77, 86, 170, 266, 431, 487, 539, 642
CviJI	RGCY	5 cut(s)	24, 100, 108, 247, 590
CviKI_1	RGCY	5 cut(s)	24, 100, 108, 247, 590
CviQI	GTAC	3 cut(s)	166, 508, 639
DdeI	CTNAG	1 cut(s)	20
DinI	GGCGCC	1 cut(s)	357
DpnI	GATC	4 cut(s)	75, 147, 294, 299
DpnII	GATC	4 cut(s)	73, 145, 292, 297
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	209
EgeI	GGCGCC	1 cut(s)	357
EheI	GGCGCC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	8 cut(s)	80, 89, 173, 269, 434, 490, 542, 645
FalI	AAGNNNNNCTT	2 cut(s)	429, 461
FatI	CATG	8 cut(s)	76, 85, 169, 265, 430, 486, 538, 641
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	2 cut(s)	305, 326
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	359
HapII	CCGG	2 cut(s)	116, 138
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	356
Hin1II	CATG	8 cut(s)	80, 89, 173, 269, 434, 490, 542, 645
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HindIII	AAGCTT	2 cut(s)	245, 588
HinfI	GANTC	2 cut(s)	80, 212
HpaII	CCGG	2 cut(s)	116, 138
HphI	GGTGA	3 cut(s)	284, 388, 604
Hpy188I	TCNGA	4 cut(s)	297, 315, 352, 564
Hpy188III	TCNNGA	2 cut(s)	77, 397
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	2 cut(s)	53, 484
HpyCH4III	ACNGT	2 cut(s)	190, 460
HpyCH4IV	ACGT	1 cut(s)	413
HpyCH4V	TGCA	4 cut(s)	33, 46, 207, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	413
Hsp92I	GRCGYC	1 cut(s)	356
Hsp92II	CATG	8 cut(s)	80, 89, 173, 269, 434, 490, 542, 645
HspAI	GCGC	1 cut(s)	356
KasI	GGCGCC	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	4 cut(s)	73, 145, 292, 297
LpnPI	CCDG	3 cut(s)	35, 129, 151
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	3 cut(s)	216, 358, 505
MaeI	CTAG	2 cut(s)	305, 326
MaeII	ACGT	1 cut(s)	413
MaeIII	GTNAC	3 cut(s)	190, 272, 384
MalI	GATC	4 cut(s)	75, 147, 294, 299
MboI	GATC	4 cut(s)	73, 145, 292, 297
MboII	GAAGA	5 cut(s)	103, 420, 476, 507, 614
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	5 cut(s)	216, 392, 477, 519, 627
Mly113I	GGCGCC	1 cut(s)	356
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	35, 49, 125, 263, 272, 346, 568, 630
Mph1103I	ATGCAT	1 cut(s)	209
MseI	TTAA	3 cut(s)	570, 582, 606
MslI	CAYNNNNRTG	3 cut(s)	264, 270, 646
MspI	CCGG	2 cut(s)	116, 138
MunI	CAATTG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	30
NarI	GGCGCC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	4 cut(s)	73, 145, 292, 297
NlaIII	CATG	8 cut(s)	80, 89, 173, 269, 434, 490, 542, 645
NlaIV	GGNNCC	2 cut(s)	136, 357
NmuCI	GTSAC	3 cut(s)	190, 272, 384
NsiI	ATGCAT	1 cut(s)	209
NspI	RCATGY	1 cut(s)	645
PagI	TCATGA	1 cut(s)	76
PciI	ACATGT	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	80
PinAI	ACCGGT	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	641
Psp1406I	AACGTT	1 cut(s)	413
PspN4I	GGNNCC	2 cut(s)	136, 357
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	3 cut(s)	167, 509, 640
RsaNI	GTAC	3 cut(s)	166, 508, 639
RseI	CAYNNNNRTG	3 cut(s)	264, 270, 646
SaqAI	TTAA	3 cut(s)	570, 582, 606
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	4 cut(s)	73, 145, 292, 297
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	206
SetI	ASST	5 cut(s)	64, 249, 274, 416, 592
SfaNI	GCATC	3 cut(s)	216, 358, 505
SfoI	GGCGCC	1 cut(s)	357
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	3 cut(s)	264, 270, 646
Sse9I	AATT	5 cut(s)	216, 392, 477, 519, 627
SsiI	CCGC	1 cut(s)	339
SspDI	GGCGCC	1 cut(s)	355
SspMI	CTAG	2 cut(s)	305, 326
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	190, 460
TaiI	ACGT	1 cut(s)	416
TaqI	TCGA	2 cut(s)	210, 396
TasI	AATT	5 cut(s)	216, 392, 477, 519, 627
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	570, 582, 606
Tru9I	TTAA	3 cut(s)	570, 582, 606
TscAI	CASTG	2 cut(s)	193, 295
TseFI	GTSAC	3 cut(s)	190, 272, 384
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	3 cut(s)	190, 272, 384
TspDTI	ATGAA	3 cut(s)	93, 447, 503
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	2 cut(s)	193, 295
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	2 cut(s)	392, 627
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	2 cut(s)	305, 326
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.