Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Reverse (-)

17968471 .. 17969717

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1197500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTATATATGTACATGTGTGTGTGTGTGTTTATATACACTCTCTATAAAAAGCCTTGTTTTCTTGCTTCACCTCTGTGTTTATCATTTTCTTTCTCATGCTTCCATTAAACACCAAGATGGCAAGGAGCAAGCAAACGGGAAGAGGAAGATCATGGAAGTAGGACCGTGGGGAGGAAATGGTGGAACTCCTTGGGATGACGGCATCTACAATGGCGTGAGAGAAATCACGGTTGTTTATGGCCACTGCATCGACTCCATCACCGTGGTGTATGATAAAAACGGCAAGCCTTTCATAGCTGAAACGCGTGGAGGTCGCGGAGGCACTCAAACCGCGGAGATAAAGCTGCAGTACCCCGATGAGTACATAGTCAGTGTGACAGGGCACTATGGCACGATGGTGTATGGCGGCACACCTATCATCCGTTCGCTTAAATTTCAGAGCAATCGAAGAACATTCGGACCATTCGGAATGGATGAAGGCACACCGTTTACTTACACTCTGGATGGAGGCAAAATTGTTGGCTTGAAGGGAAGAAATGGTTGGTACATAGATGCCATTGGGTTTCATGTATCCCCTGCCCCAGCAAGACTCTTTGACAGAGTTCAGAAGAGTTTCAGAAGGCTCGGGAGCTCGGTTACCTTCGGAGCCCAGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD Jacalin

Protein Analysis

221

Amino Acids

24.36

Weight (kDa)

9.2

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	54 - 190	6.9e-44	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	307, 318, 335
AciI	CCGC	4 cut(s)	318, 333, 335, 408
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	4 cut(s)	13, 353, 365, 548
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflIII	ACRYGT	2 cut(s)	14, 305
AgsI	TTSAA	1 cut(s)	529
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AleI	CACNNNNGTG	3 cut(s)	75, 266, 398
AluBI	AGCT	3 cut(s)	299, 346, 633
AluI	AGCT	3 cut(s)	299, 346, 633
Alw21I	GWGCWC	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	346
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	164, 461
AsuHPI	GGTGA	2 cut(s)	62, 253
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	2 cut(s)	164, 461
BaeGI	GKGCMC	1 cut(s)	387
BalI	TGGCCA	1 cut(s)	243
BanII	GRGCYC	2 cut(s)	635, 652
Bbv12I	GWGCWC	1 cut(s)	635
BbvI	GCAGC	1 cut(s)	333
BccI	CCATC	4 cut(s)	113, 266, 391, 500
BceAI	ACGGC	2 cut(s)	217, 298
BciVI	GTATCC	1 cut(s)	583
BfmI	CTRYAG	1 cut(s)	347
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	2 cut(s)	347, 409
BlsI	GCNGC	2 cut(s)	348, 410
Bme18I	GGWCC	2 cut(s)	164, 461
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	164, 461
BmiI	GGNNCC	1 cut(s)	649
BmsI	GCATC	3 cut(s)	213, 258, 544
BsaJI	CCNNGG	4 cut(s)	167, 191, 264, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseDI	CCNNGG	4 cut(s)	167, 191, 264, 333
BseGI	GGATG	4 cut(s)	202, 420, 481, 511
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	583
Bsh1236I	CGCG	3 cut(s)	307, 318, 335
BshFI	GGCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	626
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	3 cut(s)	387, 635, 652
Bsp1407I	TGTACA	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	4 cut(s)	318, 333, 335, 408
BspANI	GGCC	1 cut(s)	243
BspFNI	CGCG	3 cut(s)	307, 318, 335
BspLI	GGNNCC	1 cut(s)	649
BspMAI	CTGCAG	1 cut(s)	351
BsrGI	TGTACA	1 cut(s)	11
BssECI	CCNNGG	4 cut(s)	167, 191, 264, 333
BssMI	GATC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	4 cut(s)	168, 232, 265, 489
Bst6I	CTCTTC	2 cut(s)	137, 605
BstAUI	TGTACA	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	132, 287
BstDSI	CCRYGG	3 cut(s)	167, 264, 333
BstEII	GGTNACC	1 cut(s)	637
BstF5I	GGATG	4 cut(s)	202, 420, 481, 511
BstFNI	CGCG	3 cut(s)	307, 318, 335
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	18
BstPI	GGTNACC	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	3 cut(s)	307, 318, 335
BstV1I	GCAGC	1 cut(s)	333
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	243
BtgI	CCRYGG	3 cut(s)	167, 264, 333
BtsCI	GGATG	4 cut(s)	202, 420, 481, 511
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	244, 379
Cac8I	GCNNGC	2 cut(s)	132, 287
Cfr13I	GGNCC	2 cut(s)	164, 461
Cfr42I	CCGCGG	1 cut(s)	336
Csp6I	GTAC	4 cut(s)	12, 352, 364, 547
CviAII	CATG	4 cut(s)	15, 98, 154, 569
CviJI	RGCY	9 cut(s)	54, 243, 289, 299, 346, 525, 625, 633, 650
CviKI_1	RGCY	9 cut(s)	54, 243, 289, 299, 346, 525, 625, 633, 650
CviQI	GTAC	4 cut(s)	12, 352, 364, 547
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	137, 605
EarI	CTCTTC	2 cut(s)	137, 605
Ecl136II	GAGCTC	1 cut(s)	633
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	2 cut(s)	635, 652
Eco47I	GGWCC	2 cut(s)	164, 461
Eco53kI	GAGCTC	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	626
Eco91I	GGTNACC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	633
EcoO65I	GGTNACC	1 cut(s)	637
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	635, 652
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	4 cut(s)	18, 101, 157, 572
FatI	CATG	4 cut(s)	14, 97, 153, 568
Fnu4HI	GCNGC	2 cut(s)	347, 409
FokI	GGATG	4 cut(s)	209, 407, 488, 518
FriOI	GRGCYC	2 cut(s)	635, 652
Fsp4HI	GCNGC	2 cut(s)	347, 409
GluI	GCNGC	2 cut(s)	347, 409
GsaI	CCCAGC	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	18, 101, 157, 572
HinfI	GANTC	2 cut(s)	254, 591
HphI	GGTGA	2 cut(s)	62, 253
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	6 cut(s)	441, 461, 470, 609, 620, 647
Hpy188III	TCNNGA	2 cut(s)	503, 628
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	4 cut(s)	473, 523, 615, 652
HpyCH4III	ACNGT	4 cut(s)	168, 232, 265, 489
HpyCH4V	TGCA	2 cut(s)	249, 349
Hsp92II	CATG	4 cut(s)	18, 101, 157, 572
KspI	CCGCGG	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	3 cut(s)	127, 630, 647
LpnPI	CCDG	4 cut(s)	366, 488, 591, 597
Lsp1109I	GCAGC	1 cut(s)	333
LweI	GCATC	3 cut(s)	213, 258, 544
MaeIII	GTNAC	2 cut(s)	376, 637
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	5 cut(s)	154, 160, 462, 546, 622
MhlI	GDGCHC	3 cut(s)	387, 635, 652
MlsI	TGGCCA	1 cut(s)	243
MluCI	AATT	2 cut(s)	434, 516
MluI	ACGCGT	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	248, 585
MnlI	CCTC	6 cut(s)	83, 138, 167, 305, 314, 503
Mox20I	TGGCCA	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	243
MseI	TTAA	2 cut(s)	108, 432
MslI	CAYNNNNRTG	6 cut(s)	19, 75, 117, 263, 266, 398
Msp20I	TGGCCA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	335
MvnI	CGCG	3 cut(s)	307, 318, 335
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	4 cut(s)	18, 101, 157, 572
NlaIV	GGNNCC	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	18
OliI	CACNNNNGTG	3 cut(s)	75, 266, 398
PciI	ACATGT	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	348, 410
PleI	GAGTC	2 cut(s)	248, 585
PpsI	GAGTC	2 cut(s)	248, 585
PscI	ACATGT	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	635
PspEI	GGTNACC	1 cut(s)	637
PspFI	CCCAGC	1 cut(s)	583
PspN4I	GGNNCC	1 cut(s)	649
PspPI	GGNCC	2 cut(s)	164, 461
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	4 cut(s)	13, 353, 365, 548
RsaNI	GTAC	4 cut(s)	12, 352, 364, 547
RseI	CAYNNNNRTG	6 cut(s)	19, 75, 117, 263, 266, 398
SacI	GAGCTC	1 cut(s)	635
SacII	CCGCGG	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	108, 432
SatI	GCNGC	2 cut(s)	347, 409
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	164, 461
SchI	GAGTC	2 cut(s)	248, 585
SduI	GDGCHC	3 cut(s)	387, 635, 652
SetI	ASST	7 cut(s)	75, 301, 316, 348, 418, 635, 644
SfaNI	GCATC	3 cut(s)	213, 258, 544
SfcI	CTRYAG	1 cut(s)	347
Sfr303I	CCGCGG	1 cut(s)	336
SgrBI	CCGCGG	1 cut(s)	336
SinI	GGWCC	2 cut(s)	164, 461
SmiMI	CAYNNNNRTG	6 cut(s)	19, 75, 117, 263, 266, 398
Sse9I	AATT	2 cut(s)	434, 516
SsiI	CCGC	4 cut(s)	318, 333, 335, 408
SstI	GAGCTC	1 cut(s)	635
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	4 cut(s)	168, 232, 265, 489
TaqI	TCGA	2 cut(s)	252, 448
TasI	AATT	2 cut(s)	434, 516
TatI	WGTACW	2 cut(s)	11, 363
TauI	GCSGC	1 cut(s)	411
Tru1I	TTAA	2 cut(s)	108, 432
Tru9I	TTAA	2 cut(s)	108, 432
TscAI	CASTG	2 cut(s)	251, 379
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	3 cut(s)	283, 492, 557
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	251, 379
VpaK11BI	GGWCC	2 cut(s)	164, 461
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.