Rroxscaffold_2G00102840

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001575
Physical Location & Seq
Reverse (-)
25133313 .. 25133645
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102840.1

Sequence Viewer

Length: 333 bp
ATGTTTCTCACCCCCACTCTTAGCATCTCTTGCATAACTTGTATGCAGCAGGGAGAGGAAGATGGCAATAACAGCTTTGTGCCGAAGGAACTTTATGGAGGAACCGGTGGAGACTTTTGGGATGATGGTATGTACGATGGTGTGAGAGAAATCACCCTCACTTCTGGTCTTTGCATCCACTCAATTGGTGTGGCGTATGATAAAGATGGTGAGCTTGTTAATGCTCATAAGCATGGAGGTGACGGGGGCAGCGCCATTGCTAAGGTCAACACCAATGCTCGGGTTAGCTTCAACAAAACGATTTCTAATGTGCATGTAACGCTTTGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

110

Amino Acids

11.71

Weight (kDa)

4.91

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 30 - 85 1.2e-12 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 279
AgeI ACCGGT 1 cut(s) 104
AgsI TTSAA 1 cut(s) 292
AluBI AGCT 3 cut(s) 75, 214, 288
AluI AGCT 3 cut(s) 75, 214, 288
Alw26I GTCTC 1 cut(s) 105
Ama87I CYCGRG 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 46, 249
AsiGI ACCGGT 1 cut(s) 104
AspLEI GCGC 1 cut(s) 254
AsuHPI GGTGA 3 cut(s) 145, 221, 251
AvaI CYCGRG 1 cut(s) 279
BbvI GCAGC 2 cut(s) 58, 261
BccI CCATC 4 cut(s) 56, 119, 131, 200
BcoDI GTCTC 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 2 cut(s) 47, 250
BlsI GCNGC 2 cut(s) 48, 251
BmeT110I CYCGRG 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 103
BmsI GCATC 2 cut(s) 33, 183
Bpu10I CCTNAGC 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse118I RCCGGY 1 cut(s) 104
Bse3DI GCAATG 1 cut(s) 255
BseGI GGATG 2 cut(s) 127, 174
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 58, 261
BshTI ACCGGT 1 cut(s) 104
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 105
BsoBI CYCGRG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 20, 261
BstF5I GGATG 2 cut(s) 127, 174
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstMAI GTCTC 1 cut(s) 105
BstMWI GCNNNNNNNGC 3 cut(s) 30, 72, 319
BstNSI RCATGY 1 cut(s) 317
BstV1I GCAGC 2 cut(s) 58, 261
BstXI CCANNNNNNTGG 1 cut(s) 185
BtsCI GGATG 2 cut(s) 127, 174
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 104
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 104
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 2 cut(s) 233, 314
CviJI RGCY 3 cut(s) 75, 214, 288
CviKI_1 RGCY 3 cut(s) 75, 214, 288
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 20, 261
Eco88I CYCGRG 1 cut(s) 279
FaeI CATG 2 cut(s) 236, 317
FaiI YATR 9 cut(s) 35, 44, 96, 131, 198, 228, 234, 315, 331
FatI CATG 2 cut(s) 232, 313
Fnu4HI GCNGC 2 cut(s) 47, 250
FokI GGATG 2 cut(s) 134, 161
Fsp4HI GCNGC 2 cut(s) 47, 250
GlaI GCGC 1 cut(s) 253
GluI GCNGC 2 cut(s) 47, 250
HaeII RGCGCY 1 cut(s) 255
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 254
Hin1II CATG 2 cut(s) 236, 317
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HpaII CCGG 1 cut(s) 105
HphI GGTGA 3 cut(s) 145, 221, 251
Hpy166II GTNNAC 1 cut(s) 268
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 33, 46, 174, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 72, 319
HpyF3I CTNAG 2 cut(s) 20, 261
Hsp92II CATG 2 cut(s) 236, 317
HspAI GCGC 1 cut(s) 252
LpnPI CCDG 3 cut(s) 35, 118, 150
Lsp1109I GCAGC 2 cut(s) 58, 261
LweI GCATC 2 cut(s) 33, 183
MaeIII GTNAC 2 cut(s) 239, 316
MboII GAAGA 1 cut(s) 71
MfeI CAATTG 1 cut(s) 183
MluCI AATT 1 cut(s) 183
MnlI CCTC 4 cut(s) 49, 92, 167, 230
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 231, 237
MspI CCGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 183
MwoI GCNNNNNNNGC 3 cut(s) 30, 72, 319
NlaIII CATG 2 cut(s) 236, 317
NlaIV GGNNCC 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 317
PinAI ACCGGT 1 cut(s) 104
PkrI GCNGC 2 cut(s) 48, 251
PspN4I GGNNCC 1 cut(s) 103
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 231, 237
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 47, 250
SetI ASST 5 cut(s) 77, 216, 241, 267, 290
SfaNI GCATC 2 cut(s) 33, 183
SmiMI CAYNNNNRTG 2 cut(s) 231, 237
Sse9I AATT 1 cut(s) 183
TasI AATT 1 cut(s) 183
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 46, 249
Tsp45I GTSAC 1 cut(s) 239
XceI RCATGY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.