Rw2G034690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001575
Physical Location & Seq
Forward (+)
57135521 .. 57136498
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034690.1

Sequence Viewer

Length: 684 bp
ATGTTTATCACCAACACTCTTAGCCTCTCTTGCATAACTTGTATGCAGCAGGGAGAGGAAGGTGGCAATAAGGATCATGAATCGCATGGGAAGATAAGGCTCAACGGCTTTGTGCCGGAGAAACTTTATGGAGGAACCGGTGGAGATCTTTGGGATGATGGTATGTACCATGGCGTGAGAGAAATCACTGTCACTTATGGTCAATGCATCGACTCAATTCGTGTGGTGTATGATATAGATGGTAAGCTTGTCAATGCTCATAGGCATGGAGGTGACGGAGGCGACGACACTGATCAGGTCCGCTTCAACAAAACGATTTCTAATGTGCACATCACGCTAGACTATCCGAATGAGTTTCTAGTGAGTGTTAGCGGACACTATTCAGAGGCGCCCAATGGCGATGCGGTGGTGATATCGTCACTCAAATTCGAGAGCAATAGGAGAACGTTTGGACCATTTGGACATGAACAAGGCGAACTTTTTACTTTCACAGTTGAAGATGGAGACCAAATTGTTGGCATGAAGGGAAGAAGTGGTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAAAGTTAAGGAGGGTCTTAAAAAAGCTTATGACATCTTGGTTAAAATCACCAATCCTCTTCAAATTTTTCAATGTACATGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

227

Amino Acids

25.26

Weight (kDa)

6.04

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 42 - 188 1.2e-38 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 388
AciI CCGC 3 cut(s) 301, 372, 404
AclI AACGTT 1 cut(s) 446
AclWI GGATC 1 cut(s) 81
AcsI RAATTY 2 cut(s) 425, 660
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 3 cut(s) 167, 542, 673
AflIII ACRYGT 1 cut(s) 674
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 4 cut(s) 307, 497, 659, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 2 cut(s) 247, 623
AluI AGCT 2 cut(s) 247, 623
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 498
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 1 cut(s) 81
ApaLI GTGCAC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 2 cut(s) 425, 660
AsiGI ACCGGT 1 cut(s) 137
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 298, 452
AsuHPI GGTGA 3 cut(s) 284, 421, 637
AvaII GGWCC 2 cut(s) 298, 452
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 152, 233, 494
BceAI ACGGC 1 cut(s) 121
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 2 cut(s) 338, 359
BfoI RGCGCY 1 cut(s) 392
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 47
BlsI GCNGC 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 298, 452
BmgT120I GGNCC 2 cut(s) 298, 452
BmiI GGNNCC 2 cut(s) 136, 390
BmsI GCATC 3 cut(s) 216, 391, 538
BsaHI GRCGYC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 1 cut(s) 58
BshNI GGYRCC 1 cut(s) 388
BshTI ACCGGT 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 330
BsiSI CCGG 2 cut(s) 116, 138
BsmAI GTCTC 1 cut(s) 498
Bso31I GGTCTC 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 330
Bsp1407I TGTACA 1 cut(s) 671
Bsp143I GATC 3 cut(s) 73, 145, 292
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 3 cut(s) 301, 372, 404
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 136, 390
BspPI GGATC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 388
BspTNI GGTCTC 1 cut(s) 498
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 1 cut(s) 671
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 73, 145, 292
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 190, 493
Bst6I CTCTTC 1 cut(s) 660
BstACI GRCGYC 1 cut(s) 389
BstAUI TGTACA 1 cut(s) 671
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 3 cut(s) 76, 148, 295
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 3 cut(s) 73, 145, 292
BstMWI GCNNNNNNNGC 2 cut(s) 30, 334
BstNSI RCATGY 1 cut(s) 678
BstSLI GKGCMC 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 515
BstYI RGATCY 1 cut(s) 145
BtgI CCRYGG 1 cut(s) 169
BtgZI GCGATG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 2 cut(s) 186, 288
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 298, 452
Csp6I GTAC 3 cut(s) 166, 541, 672
CspAI ACCGGT 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 8 cut(s) 77, 86, 170, 266, 464, 520, 572, 675
CviJI RGCY 5 cut(s) 24, 100, 108, 247, 623
CviKI_1 RGCY 5 cut(s) 24, 100, 108, 247, 623
CviQI GTAC 3 cut(s) 166, 541, 672
DdeI CTNAG 1 cut(s) 20
DinI GGCGCC 1 cut(s) 390
DpnI GATC 3 cut(s) 75, 147, 294
DpnII GATC 3 cut(s) 73, 145, 292
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 498
Eco32I GATATC 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 298, 452
EcoRV GATATC 1 cut(s) 414
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 209
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 8 cut(s) 80, 89, 173, 269, 467, 523, 575, 678
FalI AAGNNNNNCTT 2 cut(s) 462, 494
FatI CATG 8 cut(s) 76, 85, 169, 265, 463, 519, 571, 674
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 47
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 47
FspBI CTAG 2 cut(s) 338, 359
GlaI GCGC 1 cut(s) 390
GluI GCNGC 1 cut(s) 47
HaeII RGCGCY 1 cut(s) 392
HapII CCGG 2 cut(s) 116, 138
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 8 cut(s) 80, 89, 173, 269, 467, 523, 575, 678
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 2 cut(s) 245, 621
HinfI GANTC 2 cut(s) 80, 212
HpaII CCGG 2 cut(s) 116, 138
HphI GGTGA 3 cut(s) 284, 421, 637
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 3 cut(s) 348, 385, 597
Hpy188III TCNNGA 2 cut(s) 77, 430
Hpy8I GTNNAC 1 cut(s) 328
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 53, 517
HpyCH4III ACNGT 2 cut(s) 190, 493
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 5 cut(s) 33, 46, 207, 328, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 334
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 446
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 8 cut(s) 80, 89, 173, 269, 467, 523, 575, 678
HspAI GCGC 1 cut(s) 389
KasI GGCGCC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 3 cut(s) 73, 145, 292
LpnPI CCDG 4 cut(s) 35, 129, 151, 281
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 3 cut(s) 216, 391, 538
MaeI CTAG 2 cut(s) 338, 359
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 3 cut(s) 190, 272, 417
MalI GATC 3 cut(s) 75, 147, 294
MboI GATC 3 cut(s) 73, 145, 292
MboII GAAGA 4 cut(s) 103, 509, 540, 647
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 5 cut(s) 216, 425, 510, 552, 660
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 8 cut(s) 35, 49, 125, 263, 272, 379, 601, 663
Mph1103I ATGCAT 1 cut(s) 209
MseI TTAA 3 cut(s) 603, 615, 639
MslI CAYNNNNRTG 3 cut(s) 264, 270, 679
MspI CCGG 2 cut(s) 116, 138
MunI CAATTG 1 cut(s) 552
MwoI GCNNNNNNNGC 2 cut(s) 30, 334
NarI GGCGCC 1 cut(s) 389
NcoI CCATGG 1 cut(s) 169
NdeII GATC 3 cut(s) 73, 145, 292
NlaIII CATG 8 cut(s) 80, 89, 173, 269, 467, 523, 575, 678
NlaIV GGNNCC 2 cut(s) 136, 390
NmuCI GTSAC 3 cut(s) 190, 272, 417
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 1 cut(s) 678
PagI TCATGA 1 cut(s) 76
PciI ACATGT 1 cut(s) 674
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PfeI GAWTC 1 cut(s) 80
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 1 cut(s) 48
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 674
Psp1406I AACGTT 1 cut(s) 446
PspN4I GGNNCC 2 cut(s) 136, 390
PspPI GGNCC 2 cut(s) 298, 452
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 3 cut(s) 167, 542, 673
RsaNI GTAC 3 cut(s) 166, 541, 672
RseI CAYNNNNRTG 3 cut(s) 264, 270, 679
SaqAI TTAA 3 cut(s) 603, 615, 639
SatI GCNGC 1 cut(s) 47
Sau3AI GATC 3 cut(s) 73, 145, 292
Sau96I GGNCC 2 cut(s) 298, 452
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 330
SetI ASST 6 cut(s) 64, 249, 274, 300, 449, 625
SfaNI GCATC 3 cut(s) 216, 391, 538
SfoI GGCGCC 1 cut(s) 390
SinI GGWCC 2 cut(s) 298, 452
SmiMI CAYNNNNRTG 3 cut(s) 264, 270, 679
Sse9I AATT 5 cut(s) 216, 425, 510, 552, 660
SsiI CCGC 3 cut(s) 301, 372, 404
SspDI GGCGCC 1 cut(s) 388
SspMI CTAG 2 cut(s) 338, 359
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 190, 493
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 210, 429
TasI AATT 5 cut(s) 216, 425, 510, 552, 660
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 3 cut(s) 603, 615, 639
Tru9I TTAA 3 cut(s) 603, 615, 639
TscAI CASTG 2 cut(s) 193, 295
TseFI GTSAC 3 cut(s) 190, 272, 417
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 3 cut(s) 190, 272, 417
TspDTI ATGAA 3 cut(s) 93, 480, 536
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 2 cut(s) 193, 295
VneI GTGCAC 1 cut(s) 326
VpaK11BI GGWCC 2 cut(s) 298, 452
XapI RAATTY 2 cut(s) 425, 660
XceI RCATGY 1 cut(s) 678
XspI CTAG 2 cut(s) 338, 359
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.