Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Reverse (-)

3764043 .. 3769717

Gene Structure 5675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G053500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGATGGCAAGGAGCGTGCAAGTGGGGAGAGGATGACCATTGTAATAGGACCATGGGGAGGAAATGGTGGAGCTGATTGGGACGATGGGATCTACAATGGGGTGAGAGAGATCAAGATTGCTTACTGTCTTTGCATCGACTCCATTACTGTGGTGTATGATAGAAACGGTAAGCCTGTCAAAGCAGAAACGCATGGTGGTCGCGGAGGCAATCAAACTGCTGAGATAAAGCTTCAGTACCCAGATGAACACCTAGTGGGTGTAAGTGGACACTATTGTCCGATGATGTTTGGCATCGGCCCACGGTTAATCCGGTCACTCAAATTTCAGAGCAACAGAAGAACATTTGGACCATATGGAATTGAAGAAGGCACACCCTTTACTTTCACAGTGGATGGAGGCCAAATTGTTGGATTAAAGGGAAGGGATGGATGGTACCTAGATGCCATTGGGTTTCATGTATCCCCTCCCCCAACCAAAAATTCTCAGAGCATTCAGAAGACCATTGTAATAGAACCATGGGGAGGAAATGGTGGAGCTGATTGGGACGATGGGATCTACAATGGGGTGAGAGAGATCAAGATTGCTTACTGTCTTTGCATCGACTCCATTACTGCGGTGTATGATAGAAACGATAAGCCTGTCAAAGCAGAAACGCATGGTGGTCGCGGAGGCAATCAAACTGCTGAGATAAAGCTTCAGTACCCAGACGAGTTCCTAGTCGGTGTAAGTGGACACTATTGTCCGATGATGTTTGGCATCGGCCCGCGGTTAATCCGGTCACTCAAATTTCAGAGCAATAGAAGAACATTTGGACCATATGGAATTGAAGAAGGCACACCCTTTACTTTCACAGTGGATGGAGGCAAAATTGTTGGATTAAAGGGAAGAGATGGATGGTACCTAGATGCCATTGGGTTTCATGTATCCCCTCCCCAAACCAAAAAACTCTTTCAGAGTATTCAGAAGAGTTTTAGAAGGCTTGGGAGCTCGGTTTCAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005796 GO:0006810 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0030141 GO:0030659 GO:0030667 GO:0031012 GO:0031090 GO:0031410 GO:0031974 GO:0031982 GO:0033036 GO:0042588 GO:0042589 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044421 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0070013 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098805 GO:0099503

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dirigent Jacalin

Protein Analysis

336

Amino Acids

36.77

Weight (kDa)

8.76

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	276, 741
Acc65I	GGTACC	2 cut(s)	435, 900
AccB1I	GGYRCC	2 cut(s)	435, 900
AccII	CGCG	3 cut(s)	204, 669, 769
AciI	CCGC	5 cut(s)	204, 617, 669, 767, 769
AclWI	GGATC	2 cut(s)	98, 563
AcsI	RAATTY	3 cut(s)	323, 481, 788
AcuI	CTGAAG	2 cut(s)	218, 683
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	4 cut(s)	239, 437, 704, 902
AfiI	CCNNNNNNNGG	2 cut(s)	59, 524
AgsI	TTSAA	3 cut(s)	365, 830, 999
AjuI	GAANNNNNNNTTGG	2 cut(s)	466, 498
AluBI	AGCT	5 cut(s)	74, 232, 539, 697, 990
AluI	AGCT	5 cut(s)	74, 232, 539, 697, 990
Alw21I	GWGCWC	1 cut(s)	992
AlwI	GGATC	2 cut(s)	98, 563
AoxI	GGCC	3 cut(s)	298, 400, 763
ApoI	RAATTY	3 cut(s)	323, 481, 788
Asp718I	GGTACC	2 cut(s)	435, 900
AspS9I	GGNCC	5 cut(s)	50, 299, 350, 764, 815
AsuHPI	GGTGA	2 cut(s)	115, 580
AvaII	GGWCC	3 cut(s)	50, 350, 815
BanI	GGYRCC	2 cut(s)	435, 900
BanII	GRGCYC	1 cut(s)	992
BbsI	GAAGAC	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	992
BccI	CCATC	8 cut(s)	80, 389, 422, 426, 545, 854, 887, 891
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 647, 681
BciVI	GTATCC	2 cut(s)	472, 937
BfaI	CTAG	4 cut(s)	254, 440, 719, 905
BfuI	GTATCC	2 cut(s)	472, 937
Bme18I	GGWCC	3 cut(s)	50, 350, 815
BmgT120I	GGNCC	5 cut(s)	50, 299, 350, 764, 815
BmiI	GGNNCC	2 cut(s)	437, 902
BmsI	GCATC	6 cut(s)	144, 303, 433, 609, 768, 898
BpiI	GAAGAC	1 cut(s)	506
BsaJI	CCNNGG	4 cut(s)	53, 302, 518, 767
BsaWI	WCCGGW	2 cut(s)	312, 777
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 524
BseDI	CCNNGG	4 cut(s)	53, 302, 518, 767
BseGI	GGATG	7 cut(s)	10, 39, 400, 433, 437, 865, 902
BseLI	CCNNNNNNNGG	2 cut(s)	59, 524
BseMII	CTCAG	3 cut(s)	213, 500, 678
Bsh1236I	CGCG	3 cut(s)	204, 669, 769
BshFI	GGCC	3 cut(s)	300, 402, 765
BshNI	GGYRCC	2 cut(s)	435, 900
BsiHKAI	GWGCWC	1 cut(s)	992
BsiSI	CCGG	2 cut(s)	313, 778
BslFI	GGGAC	2 cut(s)	95, 560
BslI	CCNNNNNNNGG	2 cut(s)	59, 524
BsmFI	GGGAC	2 cut(s)	95, 560
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	300, 402, 765
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp143I	GATC	4 cut(s)	90, 111, 555, 576
Bsp19I	CCATGG	2 cut(s)	53, 518
BspACI	CCGC	5 cut(s)	204, 617, 669, 767, 769
BspANI	GGCC	3 cut(s)	300, 402, 765
BspCNI	CTCAG	3 cut(s)	214, 499, 679
BspFNI	CGCG	3 cut(s)	204, 669, 769
BspLI	GGNNCC	2 cut(s)	437, 902
BspPI	GGATC	2 cut(s)	98, 563
BspT107I	GGYRCC	2 cut(s)	435, 900
BssECI	CCNNGG	4 cut(s)	53, 302, 518, 767
BssMI	GATC	4 cut(s)	90, 111, 555, 576
BssT1I	CCWWGG	2 cut(s)	53, 518
Bst4CI	ACNGT	7 cut(s)	128, 151, 170, 306, 391, 593, 856
Bst6I	CTCTTC	2 cut(s)	883, 962
BstC8I	GCNNGC	2 cut(s)	18, 767
BstDEI	CTNAG	4 cut(s)	222, 486, 687, 1005
BstDSI	CCRYGG	4 cut(s)	53, 302, 518, 767
BstF5I	GGATG	7 cut(s)	10, 39, 400, 433, 437, 865, 902
BstFNI	CGCG	3 cut(s)	204, 669, 769
BstKTI	GATC	4 cut(s)	93, 114, 558, 579
BstMBI	GATC	4 cut(s)	90, 111, 555, 576
BstUI	CGCG	3 cut(s)	204, 669, 769
BstV2I	GAAGAC	1 cut(s)	506
BstX2I	RGATCY	2 cut(s)	90, 555
BstXI	CCANNNNNNTGG	2 cut(s)	151, 410
BstYI	RGATCY	2 cut(s)	90, 555
BsuI	GTATCC	2 cut(s)	472, 937
BsuRI	GGCC	3 cut(s)	300, 402, 765
BtgI	CCRYGG	4 cut(s)	53, 302, 518, 767
BtsCI	GGATG	7 cut(s)	10, 39, 400, 433, 437, 865, 902
BtsIMutI	CAGTG	2 cut(s)	396, 861
Cac8I	GCNNGC	2 cut(s)	18, 767
Cfr13I	GGNCC	5 cut(s)	50, 299, 350, 764, 815
Cfr42I	CCGCGG	1 cut(s)	770
Csp6I	GTAC	4 cut(s)	238, 436, 703, 901
CviAII	CATG	6 cut(s)	54, 194, 458, 519, 659, 923
CviQI	GTAC	4 cut(s)	238, 436, 703, 901
DdeI	CTNAG	4 cut(s)	222, 486, 687, 1005
DpnI	GATC	4 cut(s)	92, 113, 557, 578
DpnII	GATC	4 cut(s)	90, 111, 555, 576
DraIII	CACNNNGTG	1 cut(s)	256
DrdI	GACNNNNNNGTC	2 cut(s)	276, 741
DseDI	GACNNNNNNGTC	2 cut(s)	276, 741
Eam1104I	CTCTTC	2 cut(s)	883, 962
EarI	CTCTTC	2 cut(s)	883, 962
Ecl136II	GAGCTC	1 cut(s)	990
Eco130I	CCWWGG	2 cut(s)	53, 518
Eco24I	GRGCYC	1 cut(s)	992
Eco47I	GGWCC	3 cut(s)	50, 350, 815
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	2 cut(s)	218, 683
EcoICRI	GAGCTC	1 cut(s)	990
EcoT14I	CCWWGG	2 cut(s)	53, 518
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	2 cut(s)	53, 518
FaeI	CATG	6 cut(s)	57, 197, 461, 522, 662, 926
FaqI	GGGAC	2 cut(s)	95, 560
FatI	CATG	6 cut(s)	53, 193, 457, 518, 658, 922
FauI	CCCGC	1 cut(s)	774
FauNDI	CATATG	2 cut(s)	355, 820
FokI	GGATG	7 cut(s)	17, 46, 407, 440, 444, 872, 909
FriOI	GRGCYC	1 cut(s)	992
FspBI	CTAG	4 cut(s)	254, 440, 719, 905
HaeIII	GGCC	3 cut(s)	300, 402, 765
HapII	CCGG	2 cut(s)	313, 778
Hin1II	CATG	6 cut(s)	57, 197, 461, 522, 662, 926
HindIII	AAGCTT	2 cut(s)	230, 695
HinfI	GANTC	2 cut(s)	140, 605
HpaII	CCGG	2 cut(s)	313, 778
HphI	GGTGA	2 cut(s)	115, 580
Hpy166II	GTNNAC	2 cut(s)	269, 734
Hpy188I	TCNGA	8 cut(s)	282, 330, 489, 498, 747, 795, 957, 966
Hpy188III	TCNNGA	2 cut(s)	115, 580
Hpy8I	GTNNAC	2 cut(s)	269, 734
HpyAV	CCTTC	4 cut(s)	362, 417, 827, 972
HpyCH4III	ACNGT	7 cut(s)	128, 151, 170, 306, 391, 593, 856
HpyCH4V	TGCA	3 cut(s)	20, 135, 600
HpyF3I	CTNAG	4 cut(s)	222, 486, 687, 1005
Hsp92II	CATG	6 cut(s)	57, 197, 461, 522, 662, 926
KpnI	GGTACC	2 cut(s)	439, 904
KspI	CCGCGG	1 cut(s)	770
Kzo9I	GATC	4 cut(s)	90, 111, 555, 576
LmnI	GCTCC	4 cut(s)	13, 71, 536, 987
LpnPI	CCDG	6 cut(s)	189, 255, 326, 654, 720, 791
LweI	GCATC	6 cut(s)	144, 303, 433, 609, 768, 898
MaeI	CTAG	4 cut(s)	254, 440, 719, 905
MaeIII	GTNAC	2 cut(s)	315, 780
MalI	GATC	4 cut(s)	92, 113, 557, 578
MboI	GATC	4 cut(s)	90, 111, 555, 576
MboII	GAAGA	7 cut(s)	351, 377, 511, 816, 842, 900, 979
MflI	RGATCY	2 cut(s)	90, 555
MhlI	GDGCHC	1 cut(s)	992
MluCI	AATT	7 cut(s)	323, 360, 405, 481, 788, 825, 870
MlyI	GAGTC	2 cut(s)	134, 599
MmeI	TCCRAC	2 cut(s)	391, 856
MnlI	CCTC	9 cut(s)	24, 53, 200, 392, 477, 518, 665, 857, 942
MseI	TTAA	4 cut(s)	308, 416, 773, 881
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	769
MspI	CCGG	2 cut(s)	313, 778
Mva1269I	GAATGC	1 cut(s)	492
MvnI	CGCG	3 cut(s)	204, 669, 769
NcoI	CCATGG	2 cut(s)	53, 518
NdeI	CATATG	2 cut(s)	355, 820
NdeII	GATC	4 cut(s)	90, 111, 555, 576
NlaIII	CATG	6 cut(s)	57, 197, 461, 522, 662, 926
NlaIV	GGNNCC	2 cut(s)	437, 902
NmuCI	GTSAC	2 cut(s)	315, 780
PctI	GAATGC	1 cut(s)	492
PleI	GAGTC	2 cut(s)	134, 599
PpsI	GAGTC	2 cut(s)	134, 599
Psp124BI	GAGCTC	1 cut(s)	992
PspN4I	GGNNCC	2 cut(s)	437, 902
PspPI	GGNCC	5 cut(s)	50, 299, 350, 764, 815
PsuI	RGATCY	2 cut(s)	90, 555
RsaI	GTAC	4 cut(s)	239, 437, 704, 902
RsaNI	GTAC	4 cut(s)	238, 436, 703, 901
RseI	CAYNNNNRTG	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	992
SacII	CCGCGG	1 cut(s)	770
SaqAI	TTAA	4 cut(s)	308, 416, 773, 881
Sau3AI	GATC	4 cut(s)	90, 111, 555, 576
Sau96I	GGNCC	5 cut(s)	50, 299, 350, 764, 815
SchI	GAGTC	2 cut(s)	134, 599
SduI	GDGCHC	1 cut(s)	992
SetI	ASST	9 cut(s)	76, 234, 255, 441, 541, 699, 906, 992, 1006
SfaNI	GCATC	6 cut(s)	144, 303, 433, 609, 768, 898
Sfr303I	CCGCGG	1 cut(s)	770
SgrBI	CCGCGG	1 cut(s)	770
SinI	GGWCC	3 cut(s)	50, 350, 815
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	7 cut(s)	323, 360, 405, 481, 788, 825, 870
SsiI	CCGC	5 cut(s)	204, 617, 669, 767, 769
SspMI	CTAG	4 cut(s)	254, 440, 719, 905
SstI	GAGCTC	1 cut(s)	992
StyI	CCWWGG	2 cut(s)	53, 518
TaaI	ACNGT	7 cut(s)	128, 151, 170, 306, 391, 593, 856
TaqI	TCGA	2 cut(s)	138, 603
TasI	AATT	7 cut(s)	323, 360, 405, 481, 788, 825, 870
Tru1I	TTAA	4 cut(s)	308, 416, 773, 881
Tru9I	TTAA	4 cut(s)	308, 416, 773, 881
TscAI	CASTG	2 cut(s)	396, 861
TseFI	GTSAC	2 cut(s)	315, 780
Tsp45I	GTSAC	2 cut(s)	315, 780
TspDTI	ATGAA	3 cut(s)	261, 446, 911
TspRI	CASTG	2 cut(s)	396, 861
VpaK11BI	GGWCC	3 cut(s)	50, 350, 815
XapI	RAATTY	3 cut(s)	323, 481, 788
XspI	CTAG	4 cut(s)	254, 440, 719, 905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.