FvH4_6g32860

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001575
Physical Location & Seq
Forward (+)
25930359 .. 25937565
7207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32860.t2

Sequence Viewer

Length: 1005 bp
ATGTTTATCACACCAACCCTCAACATCTCATGTATAACTTGTATGCAGGGAGATCATGATGAGGAAGGTAGCAATAAGAAGCGATCAGGAGGGAAGAAAAGCAGCTCAGTAGCGCCGGAACTTTATGGAGGAACAACTGATGGAGATCCTTGGGATGATGGAATCTATGACAGCATCAGAGAGATCACCCTCGTTTATGGTAACTGCATCGACTCGATCTGTGTATCCTACGATAGAAACGGTGAGCTTGTCAGAGGCGAAAGGCGAGGAGGTGATGGAAGGCGAGGAGCTCCCCCAAGTTCTGCTGAGATAAAGCTGGAGTGCCCTGATGAGTTTCTAGTGAGTATCAGTGGATACTATTGCGGGGTGACCTGGATAGTCGGAGCCCCGGTTGTGTTAAGGTCTCTCAAATTTGAGAGCAATAAAAGAACATTTGGACCATTTGGAAATCAATTTGGGACACCCTTTACTTTTAAGGTAAAAGATAGCGACAGAATTGTTGGCTTCAAAGGAAGAAAAGGACGGTACCTAGATGCAATTGGGTTTCATTCAAAACCGCCGGTACTTTATGGAGGAATGACCGGAGGACGTCCTTGGGATGACGGAATCTTTGATGGCATCAGAGAAATCACCCTCGTCTATGGTCAATGCATCGACTCAATGTGTGTGGTGTATGATAAAGATGGTTTGCCTGCTATAAGCGAAAGGCATGGAGGTGCTGAACGGGGCAGGGATCTCCATAAGCCCCTAGATACGGTTCAGGTAAAGTTGGAATACCCAAATGAGTTTATGGTGACTGTCAGTGGACACATTAGTTGGGTGCCCTGGATGAGTGGCACTCGGGTAGTACGGTCACTGAAATTTGATAGCAATAGAAGAACATATGGACCATTTGGAGTACAAGTTGGCACACCCTTCAGTTTCAGAGTAAAAGATGGAGACCAAATTGTTGGGTTGAGGGGAAGAAGTGGTTGGTACCTTTATGCAATTGGGTTTTATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

335

Amino Acids

36.98

Weight (kDa)

8.04

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 42 - 186 6.9e-37 Jacalin-like lectin domain
Jacalin PF01419 194 - 338 8.9e-36 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 592
Acc65I GGTACC 2 cut(s) 525, 975
AccB1I GGYRCC 3 cut(s) 525, 820, 975
AciI CCGC 2 cut(s) 363, 557
AclWI GGATC 2 cut(s) 140, 741
AcsI RAATTY 2 cut(s) 410, 860
AcuI CTGAAG 1 cut(s) 901
AcyI GRCGYC 1 cut(s) 589
AfaI GTAC 5 cut(s) 527, 564, 849, 900, 977
AfiI CCNNNNNNNGG 1 cut(s) 754
AgsI TTSAA 2 cut(s) 508, 552
AjnI CCWGG 2 cut(s) 371, 824
AjuI GAANNNNNNNTTGG 2 cut(s) 955, 987
AluBI AGCT 4 cut(s) 105, 247, 290, 316
AluI AGCT 4 cut(s) 105, 247, 290, 316
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 2 cut(s) 408, 933
AlwI GGATC 2 cut(s) 140, 741
Ama87I CYCGRG 1 cut(s) 840
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 2 cut(s) 410, 860
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp718I GGTACC 2 cut(s) 525, 975
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 437, 887
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 6 cut(s) 178, 254, 284, 379, 622, 805
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 2 cut(s) 437, 887
BaeGI GKGCMC 2 cut(s) 326, 825
BanI GGYRCC 3 cut(s) 525, 820, 975
BanII GRGCYC 2 cut(s) 292, 388
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 114
BccI CCATC 6 cut(s) 134, 152, 269, 608, 677, 929
BciT130I CCWGG 2 cut(s) 373, 826
BciVI GTATCC 2 cut(s) 235, 347
BcnI CCSGG 1 cut(s) 389
BcoDI GTCTC 2 cut(s) 408, 933
BfaI CTAG 3 cut(s) 338, 530, 749
BfoI RGCGCY 1 cut(s) 116
BfuI GTATCC 2 cut(s) 235, 347
BisI GCNGC 1 cut(s) 103
BlsI GCNGC 1 cut(s) 104
Bme1390I CCNGG 3 cut(s) 373, 389, 826
Bme18I GGWCC 2 cut(s) 437, 887
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 2 cut(s) 437, 887
BmiI GGNNCC 4 cut(s) 385, 527, 822, 977
BmrFI CCNGG 3 cut(s) 373, 389, 826
BmsI GCATC 5 cut(s) 183, 216, 523, 627, 660
BplI GAGNNNNNCTC 2 cut(s) 823, 855
BpmI CTGGAG 1 cut(s) 338
BpuMI CCSGG 1 cut(s) 389
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 589
BsaI GGTCTC 2 cut(s) 408, 933
BsaJI CCNNGG 4 cut(s) 149, 387, 593, 824
BsaWI WCCGGW 1 cut(s) 581
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 888, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse118I RCCGGY 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 2 cut(s) 373, 826
BseDI CCNNGG 4 cut(s) 149, 387, 593, 824
BseGI GGATG 3 cut(s) 160, 604, 834
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMII CTCAG 2 cut(s) 120, 297
BseRI GAGGAG 2 cut(s) 282, 300
BseSI GKGCMC 2 cut(s) 326, 825
BseXI GCAGC 1 cut(s) 114
BshNI GGYRCC 3 cut(s) 525, 820, 975
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 4 cut(s) 116, 389, 560, 582
BslFI GGGAC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 2 cut(s) 408, 933
BsmFI GGGAC 1 cut(s) 472
Bso31I GGTCTC 2 cut(s) 408, 933
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 4 cut(s) 292, 326, 388, 825
Bsp143I GATC 6 cut(s) 52, 83, 145, 183, 216, 733
BspACI CCGC 2 cut(s) 363, 557
BspCNI CTCAG 2 cut(s) 119, 298
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 4 cut(s) 385, 527, 822, 977
BspPI GGATC 2 cut(s) 140, 741
BspT107I GGYRCC 3 cut(s) 525, 820, 975
BspTNI GGTCTC 2 cut(s) 408, 933
BsrFI RCCGGY 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 4 cut(s) 149, 387, 593, 824
BssMI GATC 6 cut(s) 52, 83, 145, 183, 216, 733
BssNI GRCGYC 1 cut(s) 589
BssT1I CCWWGG 2 cut(s) 149, 593
Bst2UI CCWGG 2 cut(s) 373, 826
Bst4CI ACNGT 5 cut(s) 242, 525, 757, 799, 852
BstACI GRCGYC 1 cut(s) 589
BstC8I GCNNGC 1 cut(s) 693
BstDEI CTNAG 2 cut(s) 106, 306
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 3 cut(s) 160, 604, 834
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 6 cut(s) 55, 86, 148, 186, 219, 736
BstMAI GTCTC 2 cut(s) 408, 933
BstMBI GATC 6 cut(s) 52, 83, 145, 183, 216, 733
BstNI CCWGG 2 cut(s) 373, 826
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 3 cut(s) 371, 387, 824
BstSLI GKGCMC 2 cut(s) 326, 825
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 145, 733
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 2 cut(s) 145, 733
BsuI GTATCC 2 cut(s) 235, 347
BtsCI GGATG 3 cut(s) 160, 604, 834
BtsIMutI CAGTG 3 cut(s) 355, 808, 854
Cac8I GCNNGC 1 cut(s) 693
CciI TCATGA 1 cut(s) 55
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 559
Cfr13I GGNCC 2 cut(s) 437, 887
Csp6I GTAC 5 cut(s) 526, 563, 848, 899, 976
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 3 cut(s) 30, 56, 710
CviJI RGCY 7 cut(s) 105, 247, 290, 316, 386, 504, 745
CviKI_1 RGCY 7 cut(s) 105, 247, 290, 316, 386, 504, 745
CviQI GTAC 5 cut(s) 526, 563, 848, 899, 976
DdeI CTNAG 2 cut(s) 106, 306
DpnI GATC 6 cut(s) 54, 85, 147, 185, 218, 735
DpnII GATC 6 cut(s) 52, 83, 145, 183, 216, 733
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 2 cut(s) 149, 593
Eco24I GRGCYC 2 cut(s) 292, 388
Eco31I GGTCTC 2 cut(s) 408, 933
Eco47I GGWCC 2 cut(s) 437, 887
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 901
Eco88I CYCGRG 1 cut(s) 840
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 290
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 371, 824
EcoT14I CCWWGG 2 cut(s) 149, 593
EcoT22I ATGCAT 1 cut(s) 653
EcoT38I GRGCYC 2 cut(s) 292, 388
ErhI CCWWGG 2 cut(s) 149, 593
FaeI CATG 3 cut(s) 33, 59, 713
FaqI GGGAC 1 cut(s) 472
FatI CATG 3 cut(s) 29, 55, 709
FauI CCCGC 1 cut(s) 356
FauNDI CATATG 1 cut(s) 883
Fnu4HI GCNGC 1 cut(s) 103
FokI GGATG 3 cut(s) 167, 611, 841
FriOI GRGCYC 2 cut(s) 292, 388
Fsp4HI GCNGC 1 cut(s) 103
FspBI CTAG 3 cut(s) 338, 530, 749
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 1 cut(s) 116
HapII CCGG 4 cut(s) 116, 389, 560, 582
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 3 cut(s) 33, 59, 713
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 4 cut(s) 162, 212, 606, 656
HpaII CCGG 4 cut(s) 116, 389, 560, 582
HphI GGTGA 6 cut(s) 178, 254, 284, 379, 622, 805
Hpy166II GTNNAC 1 cut(s) 806
Hpy188I TCNGA 5 cut(s) 179, 254, 383, 623, 926
Hpy188III TCNNGA 2 cut(s) 56, 87
Hpy8I GTNNAC 1 cut(s) 806
HpyAV CCTTC 3 cut(s) 59, 273, 925
HpyCH4III ACNGT 5 cut(s) 242, 525, 757, 799, 852
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 5 cut(s) 46, 207, 536, 651, 986
HpyF3I CTNAG 2 cut(s) 106, 306
HpySE526I ACGT 1 cut(s) 589
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 3 cut(s) 33, 59, 713
HspAI GCGC 1 cut(s) 113
KpnI GGTACC 2 cut(s) 529, 979
Kzo9I GATC 6 cut(s) 52, 83, 145, 183, 216, 733
LmnI GCTCC 3 cut(s) 287, 295, 383
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 5 cut(s) 183, 216, 523, 627, 660
MaeI CTAG 3 cut(s) 338, 530, 749
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 4 cut(s) 200, 367, 793, 852
MalI GATC 6 cut(s) 54, 85, 147, 185, 218, 735
MboI GATC 6 cut(s) 52, 83, 145, 183, 216, 733
MboII GAAGA 4 cut(s) 106, 525, 888, 975
MfeI CAATTG 2 cut(s) 537, 987
MflI RGATCY 2 cut(s) 145, 733
MhlI GDGCHC 4 cut(s) 292, 326, 388, 825
MluCI AATT 7 cut(s) 410, 452, 495, 537, 860, 945, 987
MlyI GAGTC 2 cut(s) 206, 650
MmeI TCCRAC 2 cut(s) 361, 750
Mph1103I ATGCAT 1 cut(s) 653
MseI TTAA 2 cut(s) 398, 474
MslI CAYNNNNRTG 1 cut(s) 714
MspI CCGG 4 cut(s) 116, 389, 560, 582
MspR9I CCNGG 3 cut(s) 373, 389, 826
MunI CAATTG 2 cut(s) 537, 987
MvaI CCWGG 2 cut(s) 373, 826
NciI CCSGG 1 cut(s) 389
NdeI CATATG 1 cut(s) 883
NdeII GATC 6 cut(s) 52, 83, 145, 183, 216, 733
NlaIII CATG 3 cut(s) 33, 59, 713
NlaIV GGNNCC 4 cut(s) 385, 527, 822, 977
NmuCI GTSAC 3 cut(s) 367, 793, 852
NsiI ATGCAT 1 cut(s) 653
PagI TCATGA 1 cut(s) 55
PfeI GAWTC 2 cut(s) 162, 606
PkrI GCNGC 1 cut(s) 104
PleI GAGTC 2 cut(s) 206, 650
PpsI GAGTC 2 cut(s) 206, 650
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 371, 824
PspEI GGTNACC 1 cut(s) 367
PspGI CCWGG 2 cut(s) 371, 824
PspN4I GGNNCC 4 cut(s) 385, 527, 822, 977
PspPI GGNCC 2 cut(s) 437, 887
PsuI RGATCY 2 cut(s) 145, 733
RsaI GTAC 5 cut(s) 527, 564, 849, 900, 977
RsaNI GTAC 5 cut(s) 526, 563, 848, 899, 976
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 398, 474
SatI GCNGC 1 cut(s) 103
Sau3AI GATC 6 cut(s) 52, 83, 145, 183, 216, 733
Sau96I GGNCC 2 cut(s) 437, 887
SchI GAGTC 2 cut(s) 206, 650
ScrFI CCNGG 3 cut(s) 373, 389, 826
SduI GDGCHC 4 cut(s) 292, 326, 388, 825
SfaNI GCATC 5 cut(s) 183, 216, 523, 627, 660
SinI GGWCC 2 cut(s) 437, 887
SmiMI CAYNNNNRTG 1 cut(s) 714
Sse9I AATT 7 cut(s) 410, 452, 495, 537, 860, 945, 987
SsiI CCGC 2 cut(s) 363, 557
SspMI CTAG 3 cut(s) 338, 530, 749
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 371, 387, 824
StyI CCWWGG 2 cut(s) 149, 593
TaaI ACNGT 5 cut(s) 242, 525, 757, 799, 852
TaiI ACGT 1 cut(s) 592
TaqI TCGA 3 cut(s) 210, 215, 654
TasI AATT 7 cut(s) 410, 452, 495, 537, 860, 945, 987
TatI WGTACW 1 cut(s) 898
TfiI GAWTC 2 cut(s) 162, 606
Tru1I TTAA 2 cut(s) 398, 474
Tru9I TTAA 2 cut(s) 398, 474
TscAI CASTG 3 cut(s) 355, 808, 861
TseFI GTSAC 3 cut(s) 367, 793, 852
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 3 cut(s) 367, 793, 852
TspDTI ATGAA 1 cut(s) 536
TspGWI ACGGA 1 cut(s) 618
TspRI CASTG 3 cut(s) 355, 808, 861
VpaK11BI GGWCC 2 cut(s) 437, 887
XapI RAATTY 2 cut(s) 410, 860
XspI CTAG 3 cut(s) 338, 530, 749
ZraI GACGTC 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.