Rw2G034660

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001575
Physical Location & Seq
Forward (+)
57026102 .. 57030420
4319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034660.1

Sequence Viewer

Length: 636 bp
ATGCAGCAGGGGGAGGAAGGTAGCAATAAGGATCATGAATCGCATGGGAAGATAAGGCTCAACGGCTTCGTGCCGGAGAAACCATATGGAGGAACCAGTGGAGGTCTTTGGGATGATGGTATGTACCATGGCGTAAGAGAAATCGCTGTCACTTCTGGTTTATGCATCGACTCAATTCGTGTGGCGTATGATAAAGATGGTGAGCTTGTCAATGCTCATAAGCATGGAGGTGACGGGGGCGGCGCCAATCCTCAGATCAAGCTAGAGTATCCAGATGAGTTCCTAGTGAGTGTTAGTGGACACTGTTTTGGGGCACCCTGGATAGTTGGCAATCCGGTGGTGATACGGTCACTCAAATTCGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTTGAAGTAGGCACACCTATTACTTTCACAGTTGAAGATGGAGGCCAAATTGTTGGCATGAAGGGAAGAAGTGGTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAGAGTTAAGGAGGGTCTTAAAAAGCTCTGGCCTTCAAAAGCTTATGACATCTTGATTAAAATCGCCAAACCTCTTCAAATTTTTCAATGTACATGTATAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

211

Amino Acids

23.16

Weight (kDa)

8.62

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 27 - 165 1.3e-38 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 313
AciI CCGC 1 cut(s) 240
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 2 cut(s) 356, 606
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 3 cut(s) 125, 473, 619
AfiI CCNNNNNNNGG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 620
AgsI TTSAA 5 cut(s) 398, 428, 564, 605, 614
AjnI CCWGG 1 cut(s) 317
AjuI GAANNNNNNNTTGG 2 cut(s) 451, 483
AluBI AGCT 4 cut(s) 205, 262, 553, 569
AluI AGCT 4 cut(s) 205, 262, 553, 569
AlwI GGATC 1 cut(s) 39
AoxI GGCC 2 cut(s) 436, 557
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 2 cut(s) 356, 606
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 383
AsuHPI GGTGA 3 cut(s) 212, 242, 352
AvaII GGWCC 1 cut(s) 383
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 2 cut(s) 242, 313
BbvI GCAGC 1 cut(s) 16
BccI CCATC 3 cut(s) 110, 191, 425
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 1 cut(s) 319
BciVI GTATCC 1 cut(s) 279
BfaI CTAG 2 cut(s) 263, 284
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 1 cut(s) 279
BisI GCNGC 2 cut(s) 5, 241
BlsI GCNGC 2 cut(s) 6, 242
Bme1390I CCNGG 1 cut(s) 319
Bme18I GGWCC 1 cut(s) 383
BmgT120I GGNCC 1 cut(s) 383
BmiI GGNNCC 3 cut(s) 94, 244, 315
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 2 cut(s) 174, 469
BsaBI GATNNNNATC 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 127, 317
BsaWI WCCGGW 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 96
Bse8I GATNNNNATC 1 cut(s) 587
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 127, 317
BseGI GGATG 1 cut(s) 118
BseJI GATNNNNATC 1 cut(s) 587
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMII CTCAG 1 cut(s) 266
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 2 cut(s) 438, 559
BshNI GGYRCC 2 cut(s) 242, 313
BsiSI CCGG 2 cut(s) 74, 335
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 2 cut(s) 438, 559
Bsp1286I GDGCHC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 2 cut(s) 31, 255
Bsp19I CCATGG 1 cut(s) 127
BspACI CCGC 1 cut(s) 240
BspANI GGCC 2 cut(s) 438, 559
BspCNI CTCAG 1 cut(s) 265
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 3 cut(s) 94, 244, 315
BspPI GGATC 1 cut(s) 39
BspT107I GGYRCC 2 cut(s) 242, 313
BsrGI TGTACA 1 cut(s) 617
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 127, 317
BssMI GATC 2 cut(s) 31, 255
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 305, 348, 424
Bst6I CTCTTC 1 cut(s) 606
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 2 cut(s) 34, 258
BstMBI GATC 2 cut(s) 31, 255
BstNI CCWGG 1 cut(s) 319
BstNSI RCATGY 2 cut(s) 624, 634
BstSCI CCNGG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 1 cut(s) 16
BstXI CCANNNNNNTGG 1 cut(s) 446
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 2 cut(s) 438, 559
BtgI CCRYGG 1 cut(s) 127
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 103, 301
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 124, 472, 618
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 8 cut(s) 35, 44, 128, 224, 451, 503, 621, 631
CviJI RGCY 8 cut(s) 58, 66, 205, 262, 438, 553, 559, 569
CviKI_1 RGCY 8 cut(s) 58, 66, 205, 262, 438, 553, 559, 569
CviQI GTAC 3 cut(s) 124, 472, 618
DdeI CTNAG 1 cut(s) 252
DinI GGCGCC 1 cut(s) 244
DpnI GATC 2 cut(s) 33, 257
DpnII GATC 2 cut(s) 31, 255
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 127
Eco47I GGWCC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 127
EcoT22I ATGCAT 1 cut(s) 167
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 127
FaeI CATG 8 cut(s) 38, 47, 131, 227, 454, 506, 624, 634
FatI CATG 8 cut(s) 34, 43, 127, 223, 450, 502, 620, 630
FauNDI CATATG 1 cut(s) 85
Fnu4HI GCNGC 2 cut(s) 5, 241
FokI GGATG 1 cut(s) 125
Fsp4HI GCNGC 2 cut(s) 5, 241
FspBI CTAG 2 cut(s) 263, 284
GlaI GCGC 1 cut(s) 244
GluI GCNGC 2 cut(s) 5, 241
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 2 cut(s) 438, 559
HapII CCGG 2 cut(s) 74, 335
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 8 cut(s) 38, 47, 131, 227, 454, 506, 624, 634
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 567
HinfI GANTC 2 cut(s) 38, 170
HpaII CCGG 2 cut(s) 74, 335
HphI GGTGA 3 cut(s) 212, 242, 352
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 255, 528
Hpy188III TCNNGA 4 cut(s) 35, 272, 361, 580
Hpy8I GTNNAC 1 cut(s) 299
HpyAV CCTTC 3 cut(s) 11, 448, 570
HpyCH4III ACNGT 3 cut(s) 305, 348, 424
HpyCH4V TGCA 3 cut(s) 4, 165, 482
HpyF3I CTNAG 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 8 cut(s) 38, 47, 131, 227, 454, 506, 624, 634
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 2 cut(s) 31, 255
LpnPI CCDG 8 cut(s) 87, 109, 141, 285, 304, 331, 348, 541
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 174, 469
MaeI CTAG 2 cut(s) 263, 284
MaeIII GTNAC 3 cut(s) 148, 230, 348
MalI GATC 2 cut(s) 33, 257
MboI GATC 2 cut(s) 31, 255
MboII GAAGA 5 cut(s) 61, 384, 440, 471, 593
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 5 cut(s) 174, 356, 441, 483, 606
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 8 cut(s) 7, 83, 95, 221, 261, 428, 532, 609
Mph1103I ATGCAT 1 cut(s) 167
MseI TTAA 3 cut(s) 534, 546, 585
MslI CAYNNNNRTG 2 cut(s) 222, 228
MspI CCGG 2 cut(s) 74, 335
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 319
NarI GGCGCC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 127
NdeI CATATG 1 cut(s) 85
NdeII GATC 2 cut(s) 31, 255
NlaIII CATG 8 cut(s) 38, 47, 131, 227, 454, 506, 624, 634
NlaIV GGNNCC 3 cut(s) 94, 244, 315
NmuCI GTSAC 3 cut(s) 148, 230, 348
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 2 cut(s) 624, 634
PagI TCATGA 1 cut(s) 34
PciI ACATGT 1 cut(s) 620
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 6, 242
PleI GAGTC 1 cut(s) 164
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 164
PscI ACATGT 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 94, 244, 315
PspPI GGNCC 1 cut(s) 383
RsaI GTAC 3 cut(s) 125, 473, 619
RsaNI GTAC 3 cut(s) 124, 472, 618
RseI CAYNNNNRTG 2 cut(s) 222, 228
SaqAI TTAA 3 cut(s) 534, 546, 585
SatI GCNGC 2 cut(s) 5, 241
Sau3AI GATC 2 cut(s) 31, 255
Sau96I GGNCC 1 cut(s) 383
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 1 cut(s) 316
SetI ASST 9 cut(s) 22, 106, 207, 232, 264, 412, 555, 571, 601
SfaNI GCATC 2 cut(s) 174, 469
SfoI GGCGCC 1 cut(s) 244
SinI GGWCC 1 cut(s) 383
SmiMI CAYNNNNRTG 2 cut(s) 222, 228
Sse9I AATT 5 cut(s) 174, 356, 441, 483, 606
SsiI CCGC 1 cut(s) 240
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 2 cut(s) 263, 284
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 127
TaaI ACNGT 3 cut(s) 305, 348, 424
TaqI TCGA 2 cut(s) 168, 360
TasI AATT 5 cut(s) 174, 356, 441, 483, 606
TatI WGTACW 1 cut(s) 617
TauI GCSGC 1 cut(s) 243
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 3 cut(s) 534, 546, 585
Tru9I TTAA 3 cut(s) 534, 546, 585
TscAI CASTG 2 cut(s) 103, 308
TseFI GTSAC 3 cut(s) 148, 230, 348
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 3 cut(s) 148, 230, 348
TspDTI ATGAA 2 cut(s) 51, 467
TspRI CASTG 2 cut(s) 103, 308
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 2 cut(s) 356, 606
XceI RCATGY 2 cut(s) 624, 634
XspI CTAG 2 cut(s) 263, 284
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.