Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001575

Physical Location & Seq

Genomic Coordinates Forward (+)

59022946 .. 59023844

Gene Structure 899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTTATCACCCCCACTCTTAGCATCTCTTGCATAACTTGTATTCAGCAGGGAGAGGAAGGTAGCAATAACGATCATGAATCACATGGGAAGATAAAGCTCAACGGATTTGTGCCCAAGAAACCTTATGGAGGAACCCGTGGAGGTCTTTGGGATGATGGTATGTACCATGGCGTGAGAGAAATCACTGTCACTTCTGGTTTATGCATCGACTCAATTCGTGTGGCGTATGATAAAGATGGTGAGCTTGTCAATGCTCAAAAGCATGGAGGTGATGGGGGCGGCGCCAATGCTCAGATCAAGCTAGAGTATCCAGATGAGTTCCTGGTGAGTGTTAGTGGACACTGTTTTGGGGCACCCTGGATGGTTGGCAATCCGGTGGTGATACGGTCACTCAAATTCGAGAGCAATAGAAGAACATTTGGACCATTTGGCGTTGAAGTAGGCACACCTTTTAGTTTCACAGTTGAAGATGGAGGCCAAATTGTTGGCATGAAGGGAAGAAGTGGTTGGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCCAAAAGAAAACTCTTTCGGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jacalin

Protein Analysis

193

Amino Acids

20.74

Weight (kDa)

6.15

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Jacalin	PF01419	41 - 179	7.5e-41	Jacalin-like lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73040
fragaria_vesca	FvH4_6g32850 FvH4_6g32860 FvH4_6g32860 FvH4_6g32860 FvH4_6g32861
malus_domestica	MD09G1197000.v1.1 MD09G1197500.v1.1 MD17G1178400.v1.1
prunus_persica	Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1 Prupe.3G053500_v2.0.a1
pyrus_communis	pycom09g11400 pycom09g11410
rosa_chinensis	RchiOBHm_Chr2g0134911 RchiOBHm_Chr2g0142141 RchiOBHm_Chr2g0142241 RchiOBHm_Chr2g0142271 RchiOBHm_Chr7g0224981 RchiOBHm_Chr7g0225051
rosa_laevigata	RLG00000019429 RLG00000019949 RLG00000019951
rosa_multiflora	Rmu_co8028502.1_g000001 Rmu_sc0001211.1_g000055 Rmu_sc0004139.1_g000001 Rmu_ssc0000401.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102840 Rroxscaffold_2G00102860 Rroxscaffold_2G00109660
rosa_rugosa	Rorug02G0321000 Rorug02G0370800 Rorug02G0371200
rosa_samantha	Rh2AG372700 Rh2AG422700 Rh2AG423300 Rh2BG378500 Rh2BG432900 Rh2CG357400 Rh2CG409600 Rh2DG395400 Rh2DG442600
rosa_wichuraiana	Rw0G014850 Rw2G030370 Rw2G034640 Rw2G034660 Rw2G034680 Rw2G034690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	284, 355
AciI	CCGC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	167, 515
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	440, 470
AjnI	CCWGG	2 cut(s)	324, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	493, 525
AluBI	AGCT	3 cut(s)	100, 247, 304
AluI	AGCT	3 cut(s)	100, 247, 304
AoxI	GGCC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	254, 284, 340, 394
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	2 cut(s)	117, 358
BanI	GGYRCC	2 cut(s)	284, 355
BccI	CCATC	5 cut(s)	152, 233, 269, 358, 467
BciT130I	CCWGG	2 cut(s)	326, 361
BciVI	GTATCC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	305
BfoI	RGCGCY	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	321
BisI	GCNGC	1 cut(s)	283
BlsI	GCNGC	1 cut(s)	284
Bme1390I	CCNGG	2 cut(s)	326, 361
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	3 cut(s)	136, 286, 357
BmrFI	CCNGG	2 cut(s)	326, 361
BmsI	GCATC	3 cut(s)	33, 216, 511
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	139, 169, 359
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	326, 361
BseDI	CCNNGG	3 cut(s)	139, 169, 359
BseGI	GGATG	2 cut(s)	160, 369
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	1 cut(s)	308
BseSI	GKGCMC	2 cut(s)	117, 358
BshFI	GGCC	1 cut(s)	480
BshNI	GGYRCC	2 cut(s)	284, 355
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	131
BsnI	GGCC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	117, 358
Bsp143I	GATC	2 cut(s)	73, 297
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	136, 286, 357
BspT107I	GGYRCC	2 cut(s)	284, 355
BssECI	CCNNGG	3 cut(s)	139, 169, 359
BssMI	GATC	2 cut(s)	73, 297
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	326, 361
Bst4CI	ACNGT	4 cut(s)	190, 347, 390, 466
BstACI	GRCGYC	1 cut(s)	285
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	20, 294
BstDSI	CCRYGG	2 cut(s)	139, 169
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	2 cut(s)	160, 369
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	76, 300
BstMBI	GATC	2 cut(s)	73, 297
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNI	CCWGG	2 cut(s)	326, 361
BstSCI	CCNGG	2 cut(s)	324, 359
BstSLI	GKGCMC	2 cut(s)	117, 358
BstXI	CCANNNNNNTGG	1 cut(s)	488
BsuI	GTATCC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	480
BtgI	CCRYGG	2 cut(s)	139, 169
BtsCI	GGATG	2 cut(s)	160, 369
BtsIMutI	CAGTG	2 cut(s)	186, 343
CciI	TCATGA	1 cut(s)	76
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	166, 514
CspCI	CAANNNNNGTGG	2 cut(s)	204, 239
CviAII	CATG	6 cut(s)	77, 86, 170, 266, 493, 545
CviJI	RGCY	4 cut(s)	100, 247, 304, 480
CviKI_1	RGCY	4 cut(s)	100, 247, 304, 480
CviQI	GTAC	2 cut(s)	166, 514
DdeI	CTNAG	2 cut(s)	20, 294
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	2 cut(s)	75, 299
DpnII	GATC	2 cut(s)	73, 297
Eco130I	CCWWGG	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	425
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRII	CCWGG	2 cut(s)	324, 359
EcoT14I	CCWWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	209
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	6 cut(s)	80, 89, 173, 269, 496, 548
FatI	CATG	6 cut(s)	76, 85, 169, 265, 492, 544
Fnu4HI	GCNGC	1 cut(s)	283
FokI	GGATG	2 cut(s)	167, 376
Fsp4HI	GCNGC	1 cut(s)	283
FspBI	CTAG	1 cut(s)	305
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	480
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	6 cut(s)	80, 89, 173, 269, 496, 548
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	80, 212
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	4 cut(s)	254, 284, 340, 394
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	297, 571
Hpy188III	TCNNGA	3 cut(s)	77, 314, 403
Hpy8I	GTNNAC	1 cut(s)	341
HpyAV	CCTTC	2 cut(s)	53, 490
HpyCH4III	ACNGT	4 cut(s)	190, 347, 390, 466
HpyCH4V	TGCA	3 cut(s)	33, 207, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	20, 294
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	6 cut(s)	80, 89, 173, 269, 496, 548
HspAI	GCGC	1 cut(s)	285
KasI	GGCGCC	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	73, 297
LpnPI	CCDG	8 cut(s)	35, 183, 311, 327, 338, 346, 373, 390
LweI	GCATC	3 cut(s)	33, 216, 511
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	190, 390
MalI	GATC	2 cut(s)	75, 299
MboI	GATC	2 cut(s)	73, 297
MboII	GAAGA	4 cut(s)	103, 426, 482, 513
MfeI	CAATTG	1 cut(s)	525
MhlI	GDGCHC	2 cut(s)	117, 358
MluCI	AATT	4 cut(s)	216, 398, 483, 525
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	5 cut(s)	49, 125, 137, 263, 470
Mph1103I	ATGCAT	1 cut(s)	209
MseI	TTAA	1 cut(s)	577
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	326, 361
MunI	CAATTG	1 cut(s)	525
MvaI	CCWGG	2 cut(s)	326, 361
MwoI	GCNNNNNNNGC	1 cut(s)	30
NarI	GGCGCC	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	2 cut(s)	73, 297
NlaIII	CATG	6 cut(s)	80, 89, 173, 269, 496, 548
NlaIV	GGNNCC	3 cut(s)	136, 286, 357
NmuCI	GTSAC	2 cut(s)	190, 390
NsiI	ATGCAT	1 cut(s)	209
PagI	TCATGA	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	284
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	324, 359
PspGI	CCWGG	2 cut(s)	324, 359
PspN4I	GGNNCC	3 cut(s)	136, 286, 357
PspPI	GGNCC	1 cut(s)	425
RsaI	GTAC	2 cut(s)	167, 515
RsaNI	GTAC	2 cut(s)	166, 514
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	577
SatI	GCNGC	1 cut(s)	283
Sau3AI	GATC	2 cut(s)	73, 297
Sau96I	GGNCC	1 cut(s)	425
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	326, 361
SduI	GDGCHC	2 cut(s)	117, 358
SetI	ASST	8 cut(s)	64, 102, 127, 148, 249, 274, 306, 454
SfaNI	GCATC	3 cut(s)	33, 216, 511
SfoI	GGCGCC	1 cut(s)	286
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	4 cut(s)	216, 398, 483, 525
SsiI	CCGC	1 cut(s)	282
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	324, 359
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	4 cut(s)	190, 347, 390, 466
TaqI	TCGA	2 cut(s)	210, 402
TasI	AATT	4 cut(s)	216, 398, 483, 525
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	577
Tru9I	TTAA	1 cut(s)	577
TscAI	CASTG	2 cut(s)	193, 350
TseFI	GTSAC	2 cut(s)	190, 390
Tsp45I	GTSAC	2 cut(s)	190, 390
TspDTI	ATGAA	2 cut(s)	93, 509
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	193, 350
VpaK11BI	GGWCC	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	398
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.