RchiOBHm_Chr2g0142241

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001575
Physical Location & Seq
Forward (+)
59703605 .. 59704599
995 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51241

Sequence Viewer

Length: 678 bp
ATGTTTATCACCCCCACTCTTAGCATCTCTTGCATAACTTGTATGCAGCAGGGGGAGGAAGGTAGCAATAAGGATCATGAATCGCATGGGAAGATAAGGCTCAACGGCTTCGTGCCGGAGAATCCATATGGAGGAACCGGTGGAGGTCTTTGGGATGATGGTATGTACCATGGCGTAAGAGAAATCGCTGTCACTTCTGGTTTATGCATCGACTCAATTCGTGTGGCGTATGATAAAGATGGTGAGCTTGTCACTGCTCATAAGCATGGAGGTGACGAAGGCGGCGCCAATGCTCAGATCAAGCTAGAGTATCCAGATGAGTTCCTAGTGAGTGTTAGTGGACATTGTTTTGGGGCACCCTGGATAGTTGGTGATCCGGTGGTGATACGGTCACTCAAATTTGAGAGCAATAGAAGAACATTTGGACCATTTGGAGTTGAAGTAGGCACACCTTTTACTTTCACAGTTGAAGATGGAGGCCAAATTGTTGGCATGAAGGGAAGAAGTGGTTTGTACATAGATGCAATTGGGTTTCACATATCCCATGCCCCCAAAAGAAAACTCTTTCGGAGAGTTAAGGAGGGTCTTAAAAAGCTTTGGCCTTCAAAAGCTTATGACATCTTGATTAAAATCACCAAACCTCTTCAAATTTTTCAATGTACATGTATAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

225

Amino Acids

24.65

Weight (kDa)

7.07

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 42 - 179 2.2e-39 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 284, 355
AciI CCGC 1 cut(s) 282
AclWI GGATC 2 cut(s) 81, 368
AcsI RAATTY 2 cut(s) 398, 648
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 3 cut(s) 167, 515, 661
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 662
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 5 cut(s) 440, 470, 606, 647, 656
AjnI CCWGG 1 cut(s) 359
AluBI AGCT 4 cut(s) 247, 304, 595, 611
AluI AGCT 4 cut(s) 247, 304, 595, 611
AlwI GGATC 2 cut(s) 81, 368
AoxI GGCC 2 cut(s) 478, 599
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 2 cut(s) 398, 648
AsiGI ACCGGT 1 cut(s) 137
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 5 cut(s) 254, 284, 383, 394, 625
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 2 cut(s) 284, 355
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 152, 233, 467
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 361
BciVI GTATCC 1 cut(s) 321
BfaI CTAG 2 cut(s) 305, 326
BfoI RGCGCY 1 cut(s) 288
BfuI GTATCC 1 cut(s) 321
BisI GCNGC 2 cut(s) 47, 283
BlsI GCNGC 2 cut(s) 48, 284
Bme1390I CCNGG 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 3 cut(s) 136, 286, 357
BmrFI CCNGG 1 cut(s) 361
BmsI GCATC 3 cut(s) 33, 216, 511
BsaBI GATNNNNATC 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 169, 359
BsaWI WCCGGW 2 cut(s) 137, 376
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse118I RCCGGY 1 cut(s) 137
Bse8I GATNNNNATC 1 cut(s) 629
BseBI CCWGG 1 cut(s) 361
BseDI CCNNGG 2 cut(s) 169, 359
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 629
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 58
BshFI GGCC 2 cut(s) 480, 601
BshNI GGYRCC 2 cut(s) 284, 355
BshTI ACCGGT 1 cut(s) 137
BsiSI CCGG 3 cut(s) 116, 138, 377
BslI CCNNNNNNNGG 1 cut(s) 131
BsnI GGCC 2 cut(s) 480, 601
Bsp1286I GDGCHC 1 cut(s) 358
Bsp1407I TGTACA 2 cut(s) 513, 659
Bsp143I GATC 3 cut(s) 73, 297, 373
Bsp19I CCATGG 1 cut(s) 169
BspACI CCGC 1 cut(s) 282
BspANI GGCC 2 cut(s) 480, 601
BspCNI CTCAG 1 cut(s) 307
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 136, 286, 357
BspPI GGATC 2 cut(s) 81, 368
BspT107I GGYRCC 2 cut(s) 284, 355
BsrFI RCCGGY 1 cut(s) 137
BsrGI TGTACA 2 cut(s) 513, 659
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 169, 359
BssMI GATC 3 cut(s) 73, 297, 373
BssNI GRCGYC 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 169
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 2 cut(s) 390, 466
Bst6I CTCTTC 1 cut(s) 648
BstACI GRCGYC 1 cut(s) 285
BstAPI GCANNNNNTGC 1 cut(s) 30
BstAUI TGTACA 2 cut(s) 513, 659
BstDEI CTNAG 2 cut(s) 20, 294
BstDSI CCRYGG 1 cut(s) 169
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 3 cut(s) 76, 300, 376
BstMBI GATC 3 cut(s) 73, 297, 373
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 361
BstNSI RCATGY 2 cut(s) 666, 676
BstSCI CCNGG 1 cut(s) 359
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 488
BsuI GTATCC 1 cut(s) 321
BsuRI GGCC 2 cut(s) 480, 601
BtgI CCRYGG 1 cut(s) 169
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 252
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 425
Csp6I GTAC 3 cut(s) 166, 514, 660
CspAI ACCGGT 1 cut(s) 137
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 8 cut(s) 77, 86, 170, 266, 493, 545, 663, 673
CviJI RGCY 8 cut(s) 100, 108, 247, 304, 480, 595, 601, 611
CviKI_1 RGCY 8 cut(s) 100, 108, 247, 304, 480, 595, 601, 611
CviQI GTAC 3 cut(s) 166, 514, 660
DdeI CTNAG 2 cut(s) 20, 294
DinI GGCGCC 1 cut(s) 286
DpnI GATC 3 cut(s) 75, 299, 375
DpnII GATC 3 cut(s) 73, 297, 373
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco130I CCWWGG 1 cut(s) 169
Eco47I GGWCC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 359
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 209
EgeI GGCGCC 1 cut(s) 286
EheI GGCGCC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 8 cut(s) 80, 89, 173, 269, 496, 548, 666, 676
FatI CATG 8 cut(s) 76, 85, 169, 265, 492, 544, 662, 672
FauNDI CATATG 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 47, 283
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 2 cut(s) 47, 283
FspBI CTAG 2 cut(s) 305, 326
GlaI GCGC 1 cut(s) 286
GluI GCNGC 2 cut(s) 47, 283
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 2 cut(s) 480, 601
HapII CCGG 3 cut(s) 116, 138, 377
HhaI GCGC 1 cut(s) 287
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 8 cut(s) 80, 89, 173, 269, 496, 548, 666, 676
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HindIII AAGCTT 2 cut(s) 593, 609
HinfI GANTC 3 cut(s) 80, 121, 212
HpaII CCGG 3 cut(s) 116, 138, 377
HphI GGTGA 5 cut(s) 254, 284, 383, 394, 625
Hpy166II GTNNAC 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 297, 570
Hpy188III TCNNGA 3 cut(s) 77, 314, 622
Hpy8I GTNNAC 1 cut(s) 341
HpyAV CCTTC 4 cut(s) 53, 272, 490, 612
HpyCH4III ACNGT 2 cut(s) 390, 466
HpyCH4V TGCA 4 cut(s) 33, 46, 207, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 2 cut(s) 20, 294
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 8 cut(s) 80, 89, 173, 269, 496, 548, 666, 676
HspAI GCGC 1 cut(s) 285
KasI GGCGCC 1 cut(s) 284
Kzo9I GATC 3 cut(s) 73, 297, 373
LpnPI CCDG 8 cut(s) 35, 129, 151, 183, 327, 346, 373, 390
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 3 cut(s) 33, 216, 511
MaeI CTAG 2 cut(s) 305, 326
MaeIII GTNAC 4 cut(s) 190, 250, 272, 390
MalI GATC 3 cut(s) 75, 299, 375
MboI GATC 3 cut(s) 73, 297, 373
MboII GAAGA 5 cut(s) 103, 426, 482, 513, 635
MfeI CAATTG 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 5 cut(s) 216, 398, 483, 525, 648
Mly113I GGCGCC 1 cut(s) 285
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 7 cut(s) 49, 125, 137, 263, 470, 574, 651
Mph1103I ATGCAT 1 cut(s) 209
MseI TTAA 3 cut(s) 576, 588, 627
MslI CAYNNNNRTG 2 cut(s) 264, 270
MspI CCGG 3 cut(s) 116, 138, 377
MspR9I CCNGG 1 cut(s) 361
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 361
MwoI GCNNNNNNNGC 1 cut(s) 30
NarI GGCGCC 1 cut(s) 285
NcoI CCATGG 1 cut(s) 169
NdeI CATATG 1 cut(s) 127
NdeII GATC 3 cut(s) 73, 297, 373
NlaIII CATG 8 cut(s) 80, 89, 173, 269, 496, 548, 666, 676
NlaIV GGNNCC 3 cut(s) 136, 286, 357
NmuCI GTSAC 4 cut(s) 190, 250, 272, 390
NsiI ATGCAT 1 cut(s) 209
NspI RCATGY 2 cut(s) 666, 676
PagI TCATGA 1 cut(s) 76
PciI ACATGT 1 cut(s) 662
PfeI GAWTC 2 cut(s) 80, 121
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 2 cut(s) 48, 284
PleI GAGTC 1 cut(s) 206
PluTI GGCGCC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 206
PscI ACATGT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 3 cut(s) 136, 286, 357
PspPI GGNCC 1 cut(s) 425
RsaI GTAC 3 cut(s) 167, 515, 661
RsaNI GTAC 3 cut(s) 166, 514, 660
RseI CAYNNNNRTG 2 cut(s) 264, 270
SaqAI TTAA 3 cut(s) 576, 588, 627
SatI GCNGC 2 cut(s) 47, 283
Sau3AI GATC 3 cut(s) 73, 297, 373
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 361
SduI GDGCHC 1 cut(s) 358
SetI ASST 9 cut(s) 64, 148, 249, 274, 306, 454, 597, 613, 643
SfaNI GCATC 3 cut(s) 33, 216, 511
SfoI GGCGCC 1 cut(s) 286
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 2 cut(s) 264, 270
Sse9I AATT 5 cut(s) 216, 398, 483, 525, 648
SsiI CCGC 1 cut(s) 282
SspDI GGCGCC 1 cut(s) 284
SspMI CTAG 2 cut(s) 305, 326
StyD4I CCNGG 1 cut(s) 359
StyI CCWWGG 1 cut(s) 169
TaaI ACNGT 2 cut(s) 390, 466
TaqI TCGA 1 cut(s) 210
TasI AATT 5 cut(s) 216, 398, 483, 525, 648
TatI WGTACW 2 cut(s) 513, 659
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 2 cut(s) 80, 121
Tru1I TTAA 3 cut(s) 576, 588, 627
Tru9I TTAA 3 cut(s) 576, 588, 627
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 4 cut(s) 190, 250, 272, 390
TseI GCWGC 1 cut(s) 46
Tsp45I GTSAC 4 cut(s) 190, 250, 272, 390
TspDTI ATGAA 2 cut(s) 93, 509
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 425
XapI RAATTY 2 cut(s) 398, 648
XceI RCATGY 2 cut(s) 666, 676
XspI CTAG 2 cut(s) 305, 326
Zsp2I ATGCAT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.