Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

29579715 .. 29580644

Gene Structure 930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78635.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCTCTCTTCGTCCTCTCTAAATCCTCAGCAAAGAAGAGTCAGACGTTTATGAGCCAAGAGCAGCAGGGGACGTCTCCGTTGAACACAGACGAAGCCTTAAAGAGTCATCATAGCTTCTCGCAGAACCCAAATTACATCGAAAGTAATCTGTCTAGAAGATACCAGACTAACTTTTCGCTTGGCTCACAAAGAATCTCTGGGCAGTTTTTGATGATCCCTAATCCTGGATTTGTCGACACAAGTTCGATGACAAATACTCACGATACCAGTCTAGCAAATTTTCAGACTGTGCCTACAACTACCAATCCAAAGATTATCTTGAAAGAGGAAAAAGAAAATGAGGAGGAGCAACAGTACTGGACCATCAAGAAGGAACTGACCAAGAGCGATGCTTGCCAACGGCTTACTCTGTCAAAAAGCTCTGTTGAGGAGCACATTCTCAAGCATCTCCTTCCAGAAGATTCCCAAAAGATAGACAAAGGCAAGCCCGGAATCACGGTTAAGGTATACGACAACGATACTGACACTGAGCACGAGCTATGTCTAGCATTCCAGTGTAGCTATGTTCTAAAGAATGGTTGGGTGAAAACATTTGTCAAAAGGAGAGGGTTGGAGGAAGGAGACATGATTGGTCTCTTCTGGGAATGCTCTACTTCTAAGCTTCATTTTAGTGTGCTTTTTCGTGTAAATGCAAAAGCTCCTGCAGCAGAAGAAAAAGAAGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

243

Amino Acids

27.65

Weight (kDa)

6.4

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	77
AccI	GTMKAC	2 cut(s)	237, 510
AclWI	GGATC	1 cut(s)	211
AcsI	RAATTY	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	74
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	85, 325
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	7 cut(s)	117, 423, 541, 564, 664, 701, 725
AluI	AGCT	7 cut(s)	117, 423, 541, 564, 664, 701, 725
Alw21I	GWGCWC	2 cut(s)	438, 537
Alw26I	GTCTC	3 cut(s)	81, 618, 641
AlwI	GGATC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	64, 707
ApoI	RAATTY	1 cut(s)	280
ArsI	GACNNNNNNTTYG	2 cut(s)	160, 192
AspS9I	GGNCC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	363
BauI	CACGAG	1 cut(s)	536
Bbv12I	GWGCWC	2 cut(s)	438, 537
BbvCI	CCTCAGC	1 cut(s)	28
BbvI	GCAGC	2 cut(s)	76, 719
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	419
BciT130I	CCWGG	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	3 cut(s)	81, 618, 641
BfaI	CTAG	3 cut(s)	156, 275, 548
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	2 cut(s)	65, 708
BlsI	GCNGC	2 cut(s)	66, 709
BmcAI	AGTACT	1 cut(s)	359
Bme1390I	CCNGG	2 cut(s)	228, 492
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	228, 492
BmsI	GCATC	2 cut(s)	382, 457
Bpu10I	CCTNAGC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	270, 365, 556
BseBI	CCWGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	42, 522
BseNI	ACTGG	3 cut(s)	270, 365, 556
BseRI	GAGGAG	3 cut(s)	359, 362, 446
BseXI	GCAGC	2 cut(s)	76, 719
BsiHKAI	GWGCWC	2 cut(s)	438, 537
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	81, 618, 641
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	2 cut(s)	551, 653
Bso31I	GGTCTC	1 cut(s)	641
Bsp1286I	GDGCHC	2 cut(s)	438, 537
Bsp143I	GATC	1 cut(s)	216
BspCNI	CTCAG	2 cut(s)	41, 523
BspMAI	CTGCAG	1 cut(s)	709
BspPI	GGATC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	641
BsrI	ACTGG	3 cut(s)	270, 365, 556
BssMI	GATC	1 cut(s)	216
BssNAI	GTATAC	1 cut(s)	511
BssNI	GRCGYC	1 cut(s)	74
BssSI	CACGAG	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	292, 357, 502
Bst6I	CTCTTC	3 cut(s)	14, 32, 644
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	397, 488
BstDEI	CTNAG	3 cut(s)	28, 531, 660
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	3 cut(s)	81, 618, 641
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 707
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	226, 490
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	2 cut(s)	76, 719
BstZ17I	GTATAC	1 cut(s)	511
BtgZI	GCGATG	1 cut(s)	405
BtsIMutI	CAGTG	2 cut(s)	528, 563
Cac8I	GCNNGC	2 cut(s)	397, 488
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	1 cut(s)	628
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	3 cut(s)	28, 531, 660
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
Eam1104I	CTCTTC	3 cut(s)	14, 32, 644
EarI	CTCTTC	3 cut(s)	14, 32, 644
Eco31I	GGTCTC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	226
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	1 cut(s)	631
FaiI	YATR	6 cut(s)	53, 114, 511, 544, 567, 629
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	627
FblI	GTMKAC	2 cut(s)	237, 510
Fnu4HI	GCNGC	2 cut(s)	65, 708
Fsp4HI	GCNGC	2 cut(s)	65, 708
FspBI	CTAG	3 cut(s)	156, 275, 548
GluI	GCNGC	2 cut(s)	65, 708
HapII	CCGG	1 cut(s)	492
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	631
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	2 cut(s)	662, 723
HinfI	GANTC	5 cut(s)	40, 106, 195, 464, 495
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	2 cut(s)	238, 511
Hpy188I	TCNGA	2 cut(s)	45, 288
Hpy188III	TCNNGA	5 cut(s)	156, 263, 322, 370, 458
Hpy8I	GTNNAC	2 cut(s)	238, 511
HpyAV	CCTTC	3 cut(s)	367, 464, 614
HpyCH4III	ACNGT	3 cut(s)	292, 357, 502
HpyCH4IV	ACGT	2 cut(s)	47, 74
HpyCH4V	TGCA	2 cut(s)	695, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 707
HpyF3I	CTNAG	3 cut(s)	28, 531, 660
HpySE526I	ACGT	2 cut(s)	47, 74
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	631
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	3 cut(s)	349, 433, 706
Lsp1109I	GCAGC	2 cut(s)	76, 719
LweI	GCATC	2 cut(s)	382, 457
MaeI	CTAG	3 cut(s)	156, 275, 548
MaeII	ACGT	2 cut(s)	47, 74
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	5 cut(s)	49, 171, 473, 631, 725
MhlI	GDGCHC	2 cut(s)	438, 537
MluCI	AATT	2 cut(s)	133, 280
MlyI	GAGTC	2 cut(s)	49, 115
MmeI	TCCRAC	1 cut(s)	594
MnlI	CCTC	9 cut(s)	15, 26, 37, 322, 337, 340, 424, 602, 610
MseI	TTAA	3 cut(s)	101, 504, 730
MslI	CAYNNNNRTG	2 cut(s)	556, 672
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	2 cut(s)	228, 492
Mva1269I	GAATGC	2 cut(s)	551, 653
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	396, 707
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	631
PctI	GAATGC	2 cut(s)	551, 653
PfeI	GAWTC	3 cut(s)	195, 464, 495
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	66, 709
PleI	GAGTC	2 cut(s)	48, 114
PpsI	GAGTC	2 cut(s)	48, 114
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	363
PsrI	GAACNNNNNNTAC	2 cut(s)	119, 151
PstI	CTGCAG	1 cut(s)	709
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	556, 672
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	101, 504, 730
SatI	GCNGC	2 cut(s)	65, 708
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	1 cut(s)	363
ScaI	AGTACT	1 cut(s)	359
SchI	GAGTC	2 cut(s)	49, 115
ScrFI	CCNGG	2 cut(s)	228, 492
SduI	GDGCHC	2 cut(s)	438, 537
SfaNI	GCATC	2 cut(s)	382, 457
SfcI	CTRYAG	1 cut(s)	705
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	556, 672
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	133, 280
SspMI	CTAG	3 cut(s)	156, 275, 548
StyD4I	CCNGG	2 cut(s)	226, 490
TaaI	ACNGT	3 cut(s)	292, 357, 502
TaiI	ACGT	2 cut(s)	50, 77
TaqI	TCGA	3 cut(s)	141, 237, 248
TasI	AATT	2 cut(s)	133, 280
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	195, 464, 495
Tru1I	TTAA	3 cut(s)	101, 504, 730
Tru9I	TTAA	3 cut(s)	101, 504, 730
TscAI	CASTG	2 cut(s)	535, 563
TseI	GCWGC	2 cut(s)	64, 707
TspDTI	ATGAA	1 cut(s)	656
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	535, 563
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	1 cut(s)	280
XbaI	TCTAGA	1 cut(s)	155
XmiI	GTMKAC	2 cut(s)	237, 510
XspI	CTAG	3 cut(s)	156, 275, 548
ZraI	GACGTC	1 cut(s)	75
ZrmI	AGTACT	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.