Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

1471938 .. 1472270

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG019500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTCAGACCTAAGCCCAGTACCAATCTCCTCTACATGACAATTGCACGCACAGTAGCCTCATCACTTCCGATCGATCAAGGCCGCCACAACCATGCCGGTCCGCCCACACCGCCACGCCTGCTCCTCAAGATCCACATCGCCCCGCCTGTGCCGCATGATTTGCACCGTCATGCTCATCGTCAAGACGACCTGCCAGACCGACTCCCCATCGCCGACGAGTCTTGGATACCAGGGACGAGGCTCCACCACCGTAAACCACAGCCACCGCGCATCAAAGGTTCAGTGCCCAGAACTCTGCCTCAACCGCCATGCCAAAAGGTAGAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

12.44

Weight (kDa)

10.86

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccII	CGCG	1 cut(s)	271
AciI	CCGC	7 cut(s)	85, 104, 113, 146, 155, 269, 308
AclWI	GGATC	1 cut(s)	127
AfaI	GTAC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	232
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	291
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	2 cut(s)	85, 155
BlsI	GCNGC	2 cut(s)	86, 156
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	18
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	233
BseJI	GATNNNNATC	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	20, 116
BseSI	GKGCMC	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	271
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	72, 76, 132
BspACI	CCGC	7 cut(s)	85, 104, 113, 146, 155, 269, 308
BspANI	GGCC	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	3 cut(s)	72, 76, 132
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	55, 170, 254
BstAPI	GCANNNNNTGC	1 cut(s)	163
BstC8I	GCNNGC	2 cut(s)	49, 122
BstDEI	CTNAG	1 cut(s)	12
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	3 cut(s)	75, 79, 135
BstMBI	GATC	3 cut(s)	72, 76, 132
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 121, 154, 163, 307
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	1 cut(s)	271
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	222
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	75
BtgZI	GCGATG	2 cut(s)	124, 196
BtsIMutI	CAGTG	1 cut(s)	291
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	2 cut(s)	49, 122
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	101
ClaI	ATCGAT	1 cut(s)	75
CpoI	CGGWCCG	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	21
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	5 cut(s)	37, 95, 158, 173, 312
CviJI	RGCY	5 cut(s)	16, 59, 84, 244, 265
CviKI_1	RGCY	5 cut(s)	16, 59, 84, 244, 265
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	3 cut(s)	74, 78, 134
DpnII	GATC	3 cut(s)	72, 76, 132
EciI	GGCGGA	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	101
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	5 cut(s)	40, 98, 161, 176, 315
FaiI	YATR	5 cut(s)	38, 96, 159, 174, 313
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	5 cut(s)	36, 94, 157, 172, 311
FauI	CCCGC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	85, 155
Fsp4HI	GCNGC	2 cut(s)	85, 155
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	2 cut(s)	85, 155
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	5 cut(s)	40, 98, 161, 176, 315
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	204, 221
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	8, 72
Hpy188III	TCNNGA	2 cut(s)	130, 185
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	221
HpyCH4III	ACNGT	3 cut(s)	55, 170, 254
HpyCH4V	TGCA	2 cut(s)	47, 166
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 121, 154, 163, 307
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	5 cut(s)	40, 98, 161, 176, 315
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	72, 76, 132
LmnI	GCTCC	2 cut(s)	129, 249
LpnPI	CCDG	9 cut(s)	31, 112, 134, 162, 206, 210, 219, 246, 304
LweI	GCATC	1 cut(s)	282
MalI	GATC	3 cut(s)	74, 78, 134
MboI	GATC	3 cut(s)	72, 76, 132
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	2 cut(s)	198, 230
MnlI	CCTC	5 cut(s)	41, 70, 137, 234, 312
MslI	CAYNNNNRTG	2 cut(s)	93, 171
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	5 cut(s)	112, 121, 154, 163, 307
NdeII	GATC	3 cut(s)	72, 76, 132
NlaIII	CATG	5 cut(s)	40, 98, 161, 176, 315
NlaIV	GGNNCC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	86, 156
Ple19I	CGATCG	1 cut(s)	75
PleI	GAGTC	2 cut(s)	198, 229
PpsI	GAGTC	2 cut(s)	198, 229
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	132
PvuI	CGATCG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	2 cut(s)	93, 171
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SatI	GCNGC	2 cut(s)	85, 155
Sau3AI	GATC	3 cut(s)	72, 76, 132
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	2 cut(s)	198, 230
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	4 cut(s)	13, 195, 283, 324
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	93, 171
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	7 cut(s)	85, 104, 113, 146, 155, 269, 308
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	55, 170, 254
TaqI	TCGA	1 cut(s)	75
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	42
TauI	GCSGC	2 cut(s)	87, 157
TscAI	CASTG	1 cut(s)	291
TspRI	CASTG	1 cut(s)	291
VpaK11BI	GGWCC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.