Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

59921951 .. 59922895

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00379640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTCACTGGTTTCGGGCAAGCCGACGATGGTGATGCCGACATCGAGATTAGGCGGTGGTTTGGGGGGCTGGGCTCGAATTCTTTTGGATTCGGGCTGGGCTCTTCTAAGCAGTTGCGATGTGGTTTCGTGGCAGCGAACCGGATGTTTACGGCGGACAATGGTGTTTGGCGGGTCATGGCTGCCGGTGGAAGGTTGCGGCGCAAGGTGCGGTGCGAGAGGAGGGAGTTAAGTGATGGTGCCGGTCTTGTATGGGTGTGGGAGAGAGTGGCCACGGCGGGCGGATTTGACTTCGATGTGGAGTCGGTGATACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.51

Weight (kDa)

8.88

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	7 cut(s)	55, 155, 172, 199, 211, 278, 282
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	2 cut(s)	134, 182
ApoI	RAATTY	1 cut(s)	79
AspLEI	GCGC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	239
BanII	GRGCYC	2 cut(s)	77, 104
BbvI	GCAGC	2 cut(s)	146, 169
BccI	CCATC	2 cut(s)	23, 230
BceAI	ACGGC	2 cut(s)	168, 291
BcgI	CGANNNNNNTGC	2 cut(s)	17, 51
BisI	GCNGC	3 cut(s)	135, 183, 200
BlsI	GCNGC	3 cut(s)	136, 184, 201
BmiI	GGNNCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	2 cut(s)	185, 242
Bse1I	ACTGG	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	146, 169
BseYI	CCCAGC	2 cut(s)	70, 97
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	3 cut(s)	142, 186, 243
BslI	CCNNNNNNNGG	1 cut(s)	192
BsnI	GGCC	1 cut(s)	272
Bsp1286I	GDGCHC	2 cut(s)	77, 104
BspACI	CCGC	7 cut(s)	55, 155, 172, 199, 211, 278, 282
BspANI	GGCC	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	241
BspQI	GCTCTTC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	185, 242
BsrI	ACTGG	1 cut(s)	13
BssAI	RCCGGY	2 cut(s)	185, 242
BssECI	CCNNGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	315
Bst6I	CTCTTC	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	21, 280
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	146, 169
BsuRI	GGCC	1 cut(s)	272
BtgI	CCRYGG	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	2 cut(s)	21, 280
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	2 cut(s)	185, 242
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	7 cut(s)	23, 70, 75, 97, 102, 182, 272
CviKI_1	RGCY	7 cut(s)	23, 70, 75, 97, 102, 182, 272
DdeI	CTNAG	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
EciI	GGCGGA	2 cut(s)	170, 297
Eco24I	GRGCYC	2 cut(s)	77, 104
EcoRI	GAATTC	1 cut(s)	79
EcoT38I	GRGCYC	2 cut(s)	77, 104
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	179, 253
FatI	CATG	1 cut(s)	177
FauI	CCCGC	2 cut(s)	165, 271
Fnu4HI	GCNGC	3 cut(s)	135, 183, 200
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	2 cut(s)	77, 104
Fsp4HI	GCNGC	3 cut(s)	135, 183, 200
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	3 cut(s)	135, 183, 200
GsaI	CCCAGC	2 cut(s)	74, 101
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	3 cut(s)	142, 186, 243
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	90, 302
HpaII	CCGG	3 cut(s)	142, 186, 243
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	315
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	108
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	109
LpnPI	CCDG	5 cut(s)	56, 83, 155, 199, 256
Lsp1109I	GCAGC	2 cut(s)	146, 169
LweI	GCATC	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	2 cut(s)	77, 104
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	1 cut(s)	79
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	2 cut(s)	213, 216
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	1 cut(s)	230
Msp20I	TGGCCA	1 cut(s)	272
MspI	CCGG	3 cut(s)	142, 186, 243
MwoI	GCNNNNNNNGC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	4
PciSI	GCTCTTC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	90
PkrI	GCNGC	3 cut(s)	136, 184, 201
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PspFI	CCCAGC	2 cut(s)	70, 97
PspN4I	GGNNCC	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	3 cut(s)	135, 183, 200
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	77, 104
SetI	ASST	2 cut(s)	197, 210
SfaNI	GCATC	1 cut(s)	25
Sse9I	AATT	1 cut(s)	79
SsiI	CCGC	7 cut(s)	55, 155, 172, 199, 211, 278, 282
TaaI	ACNGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	45, 77, 294
TasI	AATT	1 cut(s)	79
TauI	GCSGC	1 cut(s)	202
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	2 cut(s)	134, 182
Tsp45I	GTSAC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	13
XapI	RAATTY	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.