Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

41308081 .. 41308314

Gene Structure 234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0339700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGATTCTGCATGGGGGGCCGTGGTTTTATCTGAACACAATGCTTGTGGTGGGGGAGTACGACGGCCTAGGTCCCATGGAGGATGTGCCGCTGAATTTGATGGAAACCTGGGTTGCCGTAAAAGGGCTACCTTTTGCTCTGAGGAACAAAGTGGCACTCTCCATGGGGGGCTCTTCTCTAGGGAATGTAATCCGGTTTAACTTGAATGCGTTGAAGAGAAAAGAAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

77

Amino Acids

8.55

Weight (kDa)

5.75

Isoelectric Point (pI)

41.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	123
AgsI	TTSAA	2 cut(s)	205, 214
AjnI	CCWGG	1 cut(s)	107
AoxI	GGCC	2 cut(s)	17, 64
ApoI	RAATTY	1 cut(s)	94
AspA2I	CCTAGG	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	17, 71
AvaII	GGWCC	1 cut(s)	71
AvrII	CCTAGG	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	173
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	3 cut(s)	4, 79, 101
BciT130I	CCWGG	1 cut(s)	109
BfaI	CTAG	2 cut(s)	68, 179
BisI	GCNGC	1 cut(s)	89
BlnI	CCTAGG	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	17, 71
BmiI	GGNNCC	2 cut(s)	18, 73
BmrFI	CCNGG	1 cut(s)	109
BsaJI	CCNNGG	5 cut(s)	20, 67, 75, 108, 162
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	5 cut(s)	20, 67, 75, 108, 162
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	19, 66
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	19, 66
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp19I	CCATGG	2 cut(s)	75, 162
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	2 cut(s)	19, 66
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	18, 73
BspQI	GCTCTTC	1 cut(s)	178
BssECI	CCNNGG	5 cut(s)	20, 67, 75, 108, 162
BssT1I	CCWWGG	3 cut(s)	67, 75, 162
Bst2UI	CCWGG	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	178, 209
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	3 cut(s)	20, 75, 162
BstF5I	GGATG	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	19, 66
BtgI	CCRYGG	3 cut(s)	20, 75, 162
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	2 cut(s)	17, 71
Csp6I	GTAC	1 cut(s)	58
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	3 cut(s)	11, 76, 163
CviJI	RGCY	4 cut(s)	19, 66, 127, 171
CviKI_1	RGCY	4 cut(s)	19, 66, 127, 171
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	1 cut(s)	140
Eam1104I	CTCTTC	2 cut(s)	178, 209
EarI	CTCTTC	2 cut(s)	178, 209
Eco130I	CCWWGG	3 cut(s)	67, 75, 162
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	3 cut(s)	67, 75, 162
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	3 cut(s)	67, 75, 162
FaeI	CATG	3 cut(s)	14, 79, 166
FaiI	YATR	3 cut(s)	12, 77, 164
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	3 cut(s)	10, 75, 162
Fnu4HI	GCNGC	1 cut(s)	89
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	68, 179
GluI	GCNGC	1 cut(s)	89
HaeIII	GGCC	2 cut(s)	19, 66
HapII	CCGG	1 cut(s)	193
Hin1II	CATG	3 cut(s)	14, 79, 166
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	33, 141
Hpy99I	CGWCG	1 cut(s)	65
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	140
Hsp92II	CATG	3 cut(s)	14, 79, 166
LguI	GCTCTTC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	94, 121, 206
MaeI	CTAG	2 cut(s)	68, 179
MboII	GAAGA	2 cut(s)	165, 226
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	2 cut(s)	73, 135
MseI	TTAA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	16
NcoI	CCATGG	2 cut(s)	75, 162
NlaIII	CATG	3 cut(s)	14, 79, 166
NlaIV	GGNNCC	2 cut(s)	18, 73
PciSI	GCTCTTC	1 cut(s)	178
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	90
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	18, 73
PspPI	GGNCC	2 cut(s)	17, 71
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	1 cut(s)	89
Sau96I	GGNCC	2 cut(s)	17, 71
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	3 cut(s)	73, 110, 133
SinI	GGWCC	1 cut(s)	71
Sse9I	AATT	1 cut(s)	94
SsiI	CCGC	1 cut(s)	89
SspMI	CTAG	2 cut(s)	68, 179
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	3 cut(s)	67, 75, 162
TasI	AATT	1 cut(s)	94
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	71
XapI	RAATTY	1 cut(s)	94
XmaJI	CCTAGG	1 cut(s)	67
XspI	CTAG	2 cut(s)	68, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.