Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

15048250 .. 15048651

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG167800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCATCTTTGCCTCCAACTAAATCGTTCCCAGAAGACCATATTTCAGCACCATCGACACCTTTGTTCTATGAATTCCTTCCATCTTCATCTTCAAGTACCATGGTGGATGAGTTGACCAAGCAAAGAAATGAGGTCACAGCTGCCAAGAATGCTAATCGTTTGAGATTTTATACTCGTAAGCAGTTAATGAAAGAGCATTGTTGGGGGGTTTCAACTCAGTTGTGTTTGTCTAACCCTTGGATACTCAAGAAAATGCTGACCAGGAGTGATCTCTTGAACTTGAGCAGGCTGCTGTTGCCATCATACCTGATAAACAACCCTGAATTCCCTTTCTTGGGTGACAAGTTTCCCCATAGGGTCAAGTGTCAGGGGACAGGGGTTAAATGTGACTGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

133

Amino Acids

15.18

Weight (kDa)

9.22

Isoelectric Point (pI)

61.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	74, 326
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	337, 338
AgsI	TTSAA	3 cut(s)	96, 216, 280
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	143, 292
ApoI	RAATTY	2 cut(s)	74, 326
Asp700I	GAANNNNTTC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	130, 279
BccI	CCATC	3 cut(s)	61, 91, 310
BciT130I	CCWGG	1 cut(s)	265
BciVI	GTATCC	1 cut(s)	237
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	144, 293
BlsI	GCNGC	2 cut(s)	145, 294
Bme1390I	CCNGG	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	233, 304
BsaJI	CCNNGG	2 cut(s)	102, 239
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 338
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	2 cut(s)	102, 239
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	337, 338
BseMII	CTCAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	130, 279
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	2 cut(s)	337, 338
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	157
Bsp143I	GATC	1 cut(s)	271
Bsp19I	CCATGG	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	102, 239
BssMI	GATC	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	102, 239
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	1 cut(s)	395
BstC8I	GCNNGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	219
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 298
BstNI	CCWGG	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	130, 279
BstV2I	GAAGAC	1 cut(s)	42
BsuI	GTATCC	1 cut(s)	237
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	2 cut(s)	143, 292
CviKI_1	RGCY	2 cut(s)	143, 292
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	102, 239
EcoRI	GAATTC	2 cut(s)	74, 326
EcoRII	CCWGG	1 cut(s)	263
EcoT14I	CCWWGG	2 cut(s)	102, 239
ErhI	CCWWGG	2 cut(s)	102, 239
FaeI	CATG	1 cut(s)	106
FaiI	YATR	7 cut(s)	42, 72, 104, 174, 307, 357, 400
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	144, 293
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	2 cut(s)	144, 293
GluI	GCNGC	2 cut(s)	144, 293
Hin1II	CATG	1 cut(s)	106
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188III	TCNNGA	2 cut(s)	250, 277
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	1 cut(s)	395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 298
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	45, 250, 274, 277, 323, 336, 356, 363
Lsp1109I	GCAGC	2 cut(s)	130, 279
MaeIII	GTNAC	3 cut(s)	136, 341, 389
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	3 cut(s)	47, 78, 84
MluCI	AATT	2 cut(s)	74, 326
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	2 cut(s)	24, 127
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	188, 384
MspA1I	CMGCKG	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	265
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	152, 298
NcoI	CCATGG	1 cut(s)	102
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	106
NmuCI	GTSAC	3 cut(s)	136, 341, 389
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	1 cut(s)	78
PkrI	GCNGC	2 cut(s)	145, 294
Psp6I	CCWGG	1 cut(s)	263
PspGI	CCWGG	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	188, 384
SatI	GCNGC	2 cut(s)	144, 293
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	4 cut(s)	64, 138, 145, 312
SmlI	CTYRAG	2 cut(s)	248, 283
SmoI	CTYRAG	2 cut(s)	248, 283
Sse9I	AATT	2 cut(s)	74, 326
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	102, 239
TaaI	ACNGT	1 cut(s)	395
TaqI	TCGA	1 cut(s)	56
TasI	AATT	2 cut(s)	74, 326
Tru1I	TTAA	2 cut(s)	188, 384
Tru9I	TTAA	2 cut(s)	188, 384
TseFI	GTSAC	3 cut(s)	136, 341, 389
TseI	GCWGC	2 cut(s)	143, 292
Tsp45I	GTSAC	3 cut(s)	136, 341, 389
TspDTI	ATGAA	3 cut(s)	78, 87, 206
XapI	RAATTY	2 cut(s)	74, 326
XmnI	GAANNNNTTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.