Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

10964963 .. 10965729

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G102400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAGGAAGAAATTGATCTCTCAGCACTCCTGGACCTGACCCTTGGCCTTCCTGGAGCTAGGGTTAACCCTTGCCCAGAACCAGACCAACTTTCCACTGCCCTCACTTTGTGTGATCCAACTTGGAATTACGACACACACCAGAGAAAAGCAGAGGAATATTTAGACCCTGCTCCTCTCAGATTTGCCCTTCCTAATCCGGAACACGAGAAAATGTCGGGTACGAATGATATCAACAAGGAATTAAAGAAGAAGAAGAGAAACCAAGCAGTGCCGGATACGGTGAGTCTACAGCCTCGGGATGAGGGGCCTTGGAAAATCAGGAAGAAGCTGACAGCAAGCGACACTGGAAACTGCTCAAGGCTACTGATGCCGAAAAAATCGGTCATCGACCATGTTATGTGTTACTTGGATGACAAGTTTGCCAAAAGGGTCATGAGCGGAGAGGGTATAGGAGTTTTGGTTGTAGACTGCGACACAAACACCGGGCATTACTTGAATTTCAAGCTTTGGGGGTCAGCCGAGTTTTACATTCTCAACGGAGATTGGAGGCAAGAGTTTGTGCACAGGAGAGGCTTGAAGGAGAAGGATAGAATTGGGCTTTATTGGGATACCTCCAAATCCATGTTCATGTTTTCTGTTCTTGAAAGGGCAATCCAATCCCAATTCCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

25.73

Weight (kDa)

6.96

Isoelectric Point (pI)

36.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	2 cut(s)	289, 468
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	110
AcsI	RAATTY	1 cut(s)	499
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	499, 505, 580, 647
AjnI	CCWGG	2 cut(s)	30, 52
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	3 cut(s)	59, 331, 508
AluI	AGCT	3 cut(s)	59, 331, 508
Alw21I	GWGCWC	1 cut(s)	567
Alw44I	GTGCAC	1 cut(s)	563
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	46, 308
ApaLI	GTGCAC	1 cut(s)	563
ApoI	RAATTY	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	34, 308
AsuC2I	CCSGG	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	567
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	567
BciT130I	CCWGG	2 cut(s)	32, 54
BciVI	GTATCC	2 cut(s)	271, 604
BcnI	CCSGG	1 cut(s)	487
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	290
BfuI	GTATCC	2 cut(s)	271, 604
Bme1390I	CCNGG	3 cut(s)	32, 54, 487
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	34, 308
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	32, 54, 487
BmsI	GCATC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	487
BsaJI	CCNNGG	3 cut(s)	43, 296, 311
BsaWI	WCCGGW	1 cut(s)	199
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 447, 477
Bse1I	ACTGG	1 cut(s)	352
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	32, 54
BseDI	CCNNGG	3 cut(s)	43, 296, 311
BseGI	GGATG	2 cut(s)	307, 418
BseMII	CTCAG	2 cut(s)	36, 193
BseNI	ACTGG	1 cut(s)	352
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	567
BshFI	GGCC	2 cut(s)	48, 310
BsiHKAI	GWGCWC	1 cut(s)	567
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	200, 275, 486
BsnI	GGCC	2 cut(s)	48, 310
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	567
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	2 cut(s)	16, 115
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	2 cut(s)	48, 310
BspCNI	CTCAG	2 cut(s)	35, 192
BspEI	TCCGGA	1 cut(s)	199
BspHI	TCATGA	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	3 cut(s)	43, 296, 311
BssMI	GATC	2 cut(s)	16, 115
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	43, 311
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	2 cut(s)	32, 54
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	2 cut(s)	22, 179
BstF5I	GGATG	2 cut(s)	307, 418
BstKTI	GATC	2 cut(s)	19, 118
BstMBI	GATC	2 cut(s)	16, 115
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	2 cut(s)	32, 54
BstSCI	CCNGG	3 cut(s)	30, 52, 485
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	1 cut(s)	567
BsuI	GTATCC	2 cut(s)	271, 604
BsuRI	GGCC	2 cut(s)	48, 310
BtsCI	GGATG	2 cut(s)	307, 418
BtsI	GCAGTG	2 cut(s)	96, 276
BtsIMutI	CAGTG	3 cut(s)	96, 276, 345
Cac8I	GCNNGC	1 cut(s)	340
CciI	TCATGA	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	34, 308
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	4 cut(s)	395, 436, 625, 631
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	2 cut(s)	22, 179
DpnI	GATC	2 cut(s)	18, 117
DpnII	GATC	2 cut(s)	16, 115
DraIII	CACNNNGTG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	2 cut(s)	43, 311
Eco32I	GATATC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	30, 52
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	43, 311
ErhI	CCWWGG	2 cut(s)	43, 311
FaeI	CATG	4 cut(s)	398, 439, 628, 634
FaiI	YATR	6 cut(s)	396, 401, 437, 452, 626, 632
FatI	CATG	4 cut(s)	394, 435, 624, 630
FblI	GTMKAC	2 cut(s)	289, 468
FokI	GGATG	2 cut(s)	314, 425
FspBI	CTAG	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	48, 310
HapII	CCGG	3 cut(s)	200, 275, 486
Hin1II	CATG	4 cut(s)	398, 439, 628, 634
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	286
HpaI	GTTAAC	1 cut(s)	67
HpaII	CCGG	3 cut(s)	200, 275, 486
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	4 cut(s)	67, 290, 469, 565
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	5 cut(s)	200, 299, 322, 436, 644
Hpy8I	GTNNAC	4 cut(s)	67, 290, 469, 565
HpyAV	CCTTC	4 cut(s)	59, 200, 574, 580
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	2 cut(s)	22, 179
Hsp92II	CATG	4 cut(s)	398, 439, 628, 634
Kpn2I	TCCGGA	1 cut(s)	199
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	16, 115
LmnI	GCTCC	2 cut(s)	56, 178
LweI	GCATC	1 cut(s)	360
MaeI	CTAG	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	18, 117
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	2 cut(s)	16, 115
MboII	GAAGA	5 cut(s)	20, 262, 265, 268, 337
MhlI	GDGCHC	1 cut(s)	567
MluCI	AATT	6 cut(s)	12, 127, 242, 499, 594, 665
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	9 cut(s)	113, 148, 186, 298, 306, 439, 543, 566, 625
MroI	TCCGGA	1 cut(s)	199
MseI	TTAA	2 cut(s)	66, 245
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	3 cut(s)	200, 275, 486
MspR9I	CCNGG	3 cut(s)	32, 54, 487
MvaI	CCWGG	2 cut(s)	32, 54
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	16, 115
NlaIII	CATG	4 cut(s)	398, 439, 628, 634
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	547
PagI	TCATGA	1 cut(s)	435
PfoI	TCCNGGA	2 cut(s)	30, 52
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp6I	CCWGG	2 cut(s)	30, 52
PspGI	CCWGG	2 cut(s)	30, 52
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	2 cut(s)	34, 308
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	66, 245
Sau3AI	GATC	2 cut(s)	16, 115
Sau96I	GGNCC	2 cut(s)	34, 308
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	3 cut(s)	32, 54, 487
SduI	GDGCHC	1 cut(s)	567
SetI	ASST	5 cut(s)	39, 61, 333, 510, 617
SfaNI	GCATC	1 cut(s)	360
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	6 cut(s)	12, 127, 242, 499, 594, 665
SsiI	CCGC	1 cut(s)	441
SspI	AATATT	1 cut(s)	161
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	3 cut(s)	30, 52, 485
StyI	CCWWGG	2 cut(s)	43, 311
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	390
TaqII	GACCGA	1 cut(s)	373
TasI	AATT	6 cut(s)	12, 127, 242, 499, 594, 665
Tru1I	TTAA	2 cut(s)	66, 245
Tru9I	TTAA	2 cut(s)	66, 245
TscAI	CASTG	3 cut(s)	103, 276, 352
TspDTI	ATGAA	2 cut(s)	17, 619
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	3 cut(s)	103, 276, 352
VneI	GTGCAC	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	499
XmiI	GTMKAC	2 cut(s)	289, 468
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.