Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

30809070 .. 30809492

Gene Structure 423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g30870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATCTTCGCGGAGGACACGAACTCTCTACCGATCGATCCGACCTGGGACTACAGCTCAATTTGGAAAATCAGGAAGAGGCTAGCGGCGAGCGATCTCGGAGAGCTGAGCAGGCTGTTGATGCCAAAAGAGGCAGTGCGAAAACACGTTATGTCTTACTTGGACGACAAGTTAGCCAAGATGGTCGACAGTAAAGAGGGCTTACCAGTTACAGTTGTGGACTGGGATACGTGCAACCGGCATGAGTTAACTTTTAAGCATTGGAACTCTGGCGATTTTTACATTCTGAATGGAGGTTGGAGACCGGAGTTTGTGGTTCGAAGAGGCTTAAAGGAAAATGACGAAATCGGTCTTTACCTTGACTGGGATTGGAAAACTTCCAAGTACATCTTCACGTTTTCTGTTCTTCAAAGAACAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

141

Amino Acids

16.53

Weight (kDa)

6.83

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	26 - 131	3e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	186
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	11, 86
AclWI	GGATC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	410
AjnI	CCWGG	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	2 cut(s)	57, 106
AluI	AGCT	2 cut(s)	57, 106
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	319
AsuNHI	GCTAGC	1 cut(s)	82
BccI	CCATC	1 cut(s)	175
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	83
BfmI	CTRYAG	1 cut(s)	52
BfuI	GTATCC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	87
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	46
BmrI	ACTGGG	2 cut(s)	232, 373
BmsI	GCATC	1 cut(s)	111
BmtI	GCTAGC	1 cut(s)	86
BmuI	ACTGGG	2 cut(s)	232, 373
Bpu1102I	GCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	36
BsaAI	YACGTR	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse118I	RCCGGY	1 cut(s)	237
Bse1I	ACTGG	3 cut(s)	206, 227, 368
BseBI	CCWGG	1 cut(s)	46
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	3 cut(s)	206, 227, 368
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	2 cut(s)	238, 305
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	295
Bsp119I	TTCGAA	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	3, 33, 37, 94
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	11, 86
BspCNI	CTCAG	1 cut(s)	99
BspDI	ATCGAT	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	11
BspOI	GCTAGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	237
BsrI	ACTGG	3 cut(s)	206, 227, 368
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	4 cut(s)	3, 33, 37, 94
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	191, 214
Bst6I	CTCTTC	2 cut(s)	71, 316
BstBAI	YACGTR	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	3 cut(s)	84, 91, 113
BstDEI	CTNAG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	4 cut(s)	6, 36, 40, 97
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	4 cut(s)	3, 33, 37, 94
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 121
BstNI	CCWGG	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	1 cut(s)	11
Bsu15I	ATCGAT	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	84, 91, 113
Cfr10I	RCCGGY	1 cut(s)	237
ClaI	ATCGAT	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	7 cut(s)	57, 82, 106, 115, 176, 201, 327
CviKI_1	RGCY	7 cut(s)	57, 82, 106, 115, 176, 201, 327
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	4 cut(s)	5, 35, 39, 96
DpnII	GATC	4 cut(s)	3, 33, 37, 94
Eam1104I	CTCTTC	2 cut(s)	71, 316
EarI	CTCTTC	2 cut(s)	71, 316
Eco31I	GGTCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	1 cut(s)	245
FaiI	YATR	2 cut(s)	152, 243
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	1 cut(s)	87
HapII	CCGG	2 cut(s)	238, 305
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	2 cut(s)	187, 249
HindII	GTYRAC	2 cut(s)	187, 249
HpaI	GTTAAC	1 cut(s)	249
HpaII	CCGG	2 cut(s)	238, 305
Hpy166II	GTNNAC	3 cut(s)	187, 220, 249
Hpy188I	TCNGA	3 cut(s)	42, 101, 288
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	3 cut(s)	187, 220, 249
HpyCH4III	ACNGT	2 cut(s)	191, 214
HpyCH4IV	ACGT	3 cut(s)	147, 230, 395
HpyCH4V	TGCA	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 121
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	3 cut(s)	147, 230, 395
Hsp92II	CATG	1 cut(s)	245
KspAI	GTTAAC	1 cut(s)	249
Kzo9I	GATC	4 cut(s)	3, 33, 37, 94
LweI	GCATC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	3 cut(s)	147, 230, 395
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	4 cut(s)	5, 35, 39, 96
MboI	GATC	4 cut(s)	3, 33, 37, 94
MboII	GAAGA	4 cut(s)	88, 333, 382, 398
MluCI	AATT	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	65, 278
MnlI	CCTC	6 cut(s)	7, 72, 124, 190, 287, 317
MseI	TTAA	3 cut(s)	248, 255, 329
MspI	CCGG	2 cut(s)	238, 305
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	112, 121
NdeII	GATC	4 cut(s)	3, 33, 37, 94
NheI	GCTAGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	245
NspV	TTCGAA	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	88
Ple19I	CGATCG	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PvuI	CGATCG	1 cut(s)	36
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SalI	GTCGAC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	248, 255, 329
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	3, 33, 37, 94
ScrFI	CCNGG	1 cut(s)	46
SetI	ASST	8 cut(s)	47, 59, 108, 150, 233, 298, 360, 398
SfaNI	GCATC	1 cut(s)	111
SfcI	CTRYAG	1 cut(s)	52
SfuI	TTCGAA	1 cut(s)	319
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	11, 86
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	191, 214
TaiI	ACGT	3 cut(s)	150, 233, 398
TaqI	TCGA	3 cut(s)	36, 186, 319
TaqII	GACCGA	1 cut(s)	338
TasI	AATT	1 cut(s)	60
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	248, 255, 329
Tru9I	TTAA	3 cut(s)	248, 255, 329
TscAI	CASTG	1 cut(s)	141
TspRI	CASTG	1 cut(s)	141
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.