Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Forward (+)

10264120 .. 10265198

Gene Structure 1079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G092200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGAGGAAGAAAATGAGCTCTCAGCACTCCTAGCCCTAAACCCTGGTCGTGCTAGTAGCAGTGCAAATCCTTGTCCACTACCGGGCCAAGTTTCCACTGCCCTCACTTTGTGTGATCCAACTTGGAATTACAACACAAACCAGAGAAAAGCAGAGGAATTCGACCCTGCTCCTCTCAGATTTTCCGCATTCCCTCCTAATCTGAAACACAAGAAAATAACGAATAATATGAACAAGGAATTAAAGAAGAAGAAAAGAAACCCAGTAGTGCCGGAAACTACGCTGAGTCCACAGCCTCAGGATCACGGGCCTTGGAAAATCAGGAAGAAGCTGACAGTAAGCGACCTTGGAAGCTGCTCAAGGCTACTAATGCCGAAAAAACCGGTCATCGACCATGTTTTGCATTACTTGGATGACACGTTTGCCAAAAGGGTTAAGAGTGGAGAGGGCATAGAAGTTATAGTTGAAGACTGCGATACAAACACCAGGCATCACATGACTTTCAAGCTTTGGGGGTCGGCCGAGAGCTACATTCTCAATGGAGATTGGAGACTAGAGTTTGTGCATAGGAGAGGCTTGGAGGAGAATGATAAAATTGGGCTTTATTGGGATACCTCCAAATCCATGTTCATGTTTTCTGTTCTTGAAAGGGCAAGGCAATCCCAGTTACCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

226

Amino Acids

25.69

Weight (kDa)

8.82

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	2 cut(s)	110, 309
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	417
AgeI	ACCGGT	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	467, 505, 647
AjnI	CCWGG	2 cut(s)	43, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	5 cut(s)	19, 331, 354, 508, 528
AluI	AGCT	5 cut(s)	19, 331, 354, 508, 528
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	2 cut(s)	110, 309
AoxI	GGCC	3 cut(s)	85, 308, 519
ApeKI	GCWGC	1 cut(s)	354
ApoI	RAATTY	1 cut(s)	158
AsiGI	ACCGGT	1 cut(s)	382
AspS9I	GGNCC	2 cut(s)	85, 308
AsuC2I	CCSGG	1 cut(s)	84
AxyI	CCTNAGG	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	341
BciT130I	CCWGG	2 cut(s)	45, 487
BciVI	GTATCC	1 cut(s)	604
BcnI	CCSGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	3 cut(s)	32, 54, 554
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	1 cut(s)	355
BlsI	GCNGC	1 cut(s)	356
Bme1390I	CCNGG	3 cut(s)	45, 84, 487
BmgT120I	GGNCC	2 cut(s)	85, 308
BmrFI	CCNGG	3 cut(s)	45, 84, 487
BmrI	ACTGGG	2 cut(s)	257, 658
BmsI	GCATC	1 cut(s)	499
BmuI	ACTGGG	2 cut(s)	257, 658
BpiI	GAAGAC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	43, 311, 346
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	382
Bse1I	ACTGG	2 cut(s)	263, 664
Bse21I	CCTNAGG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	45, 487
BseDI	CCNNGG	3 cut(s)	43, 311, 346
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	4 cut(s)	36, 190, 275, 311
BseNI	ACTGG	2 cut(s)	263, 664
BseRI	GAGGAG	2 cut(s)	162, 596
BseX3I	CGGCCG	1 cut(s)	519
BseXI	GCAGC	1 cut(s)	341
Bsh1285I	CGRYCG	1 cut(s)	522
BshFI	GGCC	3 cut(s)	87, 310, 521
BshTI	ACCGGT	1 cut(s)	382
BsiEI	CGRYCG	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	3 cut(s)	83, 272, 383
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	544
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	87, 310, 521
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	115, 301
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	3 cut(s)	87, 310, 521
BspCNI	CTCAG	4 cut(s)	35, 189, 276, 310
BspPI	GGATC	2 cut(s)	110, 309
BsrFI	RCCGGY	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	263, 664
BssAI	RCCGGY	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	43, 311, 346
BssMI	GATC	2 cut(s)	115, 301
BssT1I	CCWWGG	2 cut(s)	311, 346
Bst2UI	CCWGG	2 cut(s)	45, 487
Bst4CI	ACNGT	1 cut(s)	337
BstDEI	CTNAG	4 cut(s)	22, 176, 284, 297
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	2 cut(s)	118, 304
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	2 cut(s)	115, 301
BstMCI	CGRYCG	1 cut(s)	522
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 370
BstNI	CCWGG	2 cut(s)	45, 487
BstSCI	CCNGG	3 cut(s)	43, 82, 485
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	474
BstZI	CGGCCG	1 cut(s)	519
Bsu36I	CCTNAGG	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	87, 310, 521
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	2 cut(s)	67, 96
BtsIMutI	CAGTG	2 cut(s)	67, 96
Cfr10I	RCCGGY	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	85, 308
CspAI	ACCGGT	1 cut(s)	382
CviAII	CATG	4 cut(s)	395, 496, 625, 631
DdeI	CTNAG	4 cut(s)	22, 176, 284, 297
DpnI	GATC	2 cut(s)	117, 303
DpnII	GATC	2 cut(s)	115, 301
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	519
EagI	CGGCCG	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	311, 346
Eco24I	GRGCYC	1 cut(s)	21
Eco52I	CGGCCG	1 cut(s)	519
Eco53kI	GAGCTC	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	19
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	43, 485
EcoT14I	CCWWGG	2 cut(s)	311, 346
EcoT38I	GRGCYC	1 cut(s)	21
ErhI	CCWWGG	2 cut(s)	311, 346
FaeI	CATG	4 cut(s)	398, 499, 628, 634
FaiI	YATR	8 cut(s)	230, 396, 452, 461, 497, 567, 626, 632
FatI	CATG	4 cut(s)	394, 495, 624, 630
Fnu4HI	GCNGC	1 cut(s)	355
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	355
FspBI	CTAG	3 cut(s)	32, 54, 554
GluI	GCNGC	1 cut(s)	355
HaeIII	GGCC	3 cut(s)	87, 310, 521
HapII	CCGG	3 cut(s)	83, 272, 383
Hin1II	CATG	4 cut(s)	398, 499, 628, 634
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	1 cut(s)	286
HpaII	CCGG	3 cut(s)	83, 272, 383
Hpy166II	GTNNAC	2 cut(s)	77, 290
Hpy188I	TCNGA	2 cut(s)	179, 204
Hpy188III	TCNNGA	3 cut(s)	299, 322, 644
Hpy8I	GTNNAC	2 cut(s)	77, 290
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	65, 403, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 370
HpyF3I	CTNAG	4 cut(s)	22, 176, 284, 297
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	4 cut(s)	398, 499, 628, 634
Kzo9I	GATC	2 cut(s)	115, 301
LmnI	GCTCC	1 cut(s)	175
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	3 cut(s)	32, 54, 554
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	666
MalI	GATC	2 cut(s)	117, 303
MboI	GATC	2 cut(s)	115, 301
MboII	GAAGA	5 cut(s)	20, 259, 262, 337, 479
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	4 cut(s)	127, 158, 239, 594
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	9 cut(s)	113, 148, 183, 204, 306, 439, 566, 574, 625
MseI	TTAA	2 cut(s)	242, 435
MslI	CAYNNNNRTG	1 cut(s)	629
MspI	CCGG	3 cut(s)	83, 272, 383
MspR9I	CCNGG	3 cut(s)	45, 84, 487
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	2 cut(s)	45, 487
MwoI	GCNNNNNNNGC	2 cut(s)	32, 370
NciI	CCSGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	115, 301
NlaIII	CATG	4 cut(s)	398, 499, 628, 634
NmeAIII	GCCGAG	1 cut(s)	547
PctI	GAATGC	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	382
PkrI	GCNGC	1 cut(s)	356
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	21
Psp6I	CCWGG	2 cut(s)	43, 485
PspGI	CCWGG	2 cut(s)	43, 485
PspPI	GGNCC	2 cut(s)	85, 308
RseI	CAYNNNNRTG	1 cut(s)	629
SacI	GAGCTC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	242, 435
SatI	GCNGC	1 cut(s)	355
Sau3AI	GATC	2 cut(s)	115, 301
Sau96I	GGNCC	2 cut(s)	85, 308
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	3 cut(s)	45, 84, 487
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	21, 333, 348, 356, 422, 510, 530, 617, 673
SfaNI	GCATC	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	629
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	4 cut(s)	127, 158, 239, 594
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	3 cut(s)	32, 54, 554
SstI	GAGCTC	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	43, 82, 485
StyI	CCWWGG	2 cut(s)	311, 346
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	162, 390
TasI	AATT	4 cut(s)	127, 158, 239, 594
Tru1I	TTAA	2 cut(s)	242, 435
Tru9I	TTAA	2 cut(s)	242, 435
TscAI	CASTG	2 cut(s)	67, 103
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	245, 619
TspRI	CASTG	2 cut(s)	67, 103
XapI	RAATTY	1 cut(s)	158
XspI	CTAG	3 cut(s)	32, 54, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.