Rmu_sc0001164.1_g000007

B3 domain-containing protein At2g33720-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001164.1
Physical Location & Seq
Forward (+)
38153 .. 43398
5246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001164.1_g000007.1.cds

Sequence Viewer

Length: 1344 bp
atgtggcgggggtggtggtggagctccgacggggttgatggcgacatcaatctctccctccccggcgaaagttcaccagtgagcccacctgaggcggttttctgctttccgatcgatcaaggcccacgaccatgccggcacgaccacgccaccactcctgtgccgcatgctttgcgccgtcatgctcatcgtcatcacgacctgccagatccaaatctcgtcgtcgacgagtctaggataccagcgccgaagctcgaccaccgtacaccacagccaccacacattagaggttcagtgtcaagaactccgcctcaaaccatgccgaacgatttcaaattttcatcgatttacttgcatcgatttctaacattctggcgtcgcctcaccgacatggtgatgttgccggacggttccgggcaagctgacagtggtgatgccgacatcaagattcgctggtggcttggggattgggctccgacttcttttggggtcggactgggcgcttccaatccgttgcgatgtggcttcgtggcggtgaaccgggtgtttacggcggggtggtggtggtggtgtttggagcatcatggcgggtggctgctagagtgggtcgtccggcgacggactgctttgcggcagtggaaggttgcgacgcagggagtagtgaagaagaggggtggagaactgggcttgacaaacttttttgggcctcgggtgaactatacaaatgagaaagaaaggatgtcatctttgcctccaactaaatcgttcccagaagaccatatttcagcaccatcgacacctttgttctatgaattccttccatcttcatcttcaagtaccatggtggatgagttgaccaagcaaagaaatgaggtcacagctgccaagattgctaatcgtttgagattttatactcgtaagcagttaatgaaagagcattgttggggggtttcaactcatttgtgtttgtctaacccttggatactcaagaaaatgctgaccaggattgatctcttgaacttgagcaggctgctgttgccatcatacctgataaacaaccctgaattccctttcttgggtgacaagtttccccatagggttaagtgtcaggggttaattgtgactgtctatgactcggacacaaaaaccaaccatcgatttgttctgaaacaacggggctcctccactagctatgtcttgatcggaaagtggagagaggattttgtgaagaggagaaagttgaaggatatatggggacaaaatcggactgtattgggactgtcgcaggttcaagttcatcttttctgctctcagtctcagacgggtaacctggatagtagttga

Protein Analysis

447

Amino Acids

51.27

Weight (kDa)

9.73

Isoelectric Point (pI)

48.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 210, 1276
AccI GTMKAC 1 cut(s) 225
AciI CCGC 8 cut(s) 7, 95, 164, 308, 533, 554, 588, 631
AclWI GGATC 1 cut(s) 203
AcsI RAATTY 3 cut(s) 335, 812, 1064
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 2 cut(s) 265, 838
AfiI CCNNNNNNNGG 3 cut(s) 91, 1075, 1076
AgsI TTSAA 6 cut(s) 334, 834, 954, 1018, 1243, 1292
AjnI CCWGG 2 cut(s) 1001, 1329
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 5 cut(s) 24, 253, 422, 881, 1191
AluI AGCT 5 cut(s) 24, 253, 422, 881, 1191
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 1320
AlwI GGATC 1 cut(s) 203
Ama87I CYCGRG 1 cut(s) 708
AoxI GGCC 2 cut(s) 121, 704
ApeKI GCWGC 3 cut(s) 595, 881, 1030
ApoI RAATTY 3 cut(s) 335, 812, 1064
Asp700I GAANNNNTTC 2 cut(s) 329, 816
AspLEI GCGC 3 cut(s) 177, 247, 503
AspS9I GGNCC 2 cut(s) 122, 704
AsuC2I CCSGG 3 cut(s) 63, 415, 542
AsuHPI GGTGA 7 cut(s) 66, 376, 406, 443, 547, 724, 1091
AvaI CYCGRG 1 cut(s) 708
AxyI CCTNAGG 1 cut(s) 90
BanII GRGCYC 4 cut(s) 26, 86, 475, 1181
BbsI GAAGAC 1 cut(s) 780
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 3 cut(s) 582, 868, 1017
BccI CCATC 5 cut(s) 32, 799, 829, 1048, 1161
BceAI ACGGC 2 cut(s) 162, 567
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 2 cut(s) 1003, 1331
BciVI GTATCC 2 cut(s) 231, 975
BcnI CCSGG 3 cut(s) 63, 415, 542
BcoDI GTCTC 1 cut(s) 1320
BfaI CTAG 3 cut(s) 234, 599, 1188
BfoI RGCGCY 2 cut(s) 248, 504
BfuAI ACCTGC 2 cut(s) 210, 1276
BfuI GTATCC 2 cut(s) 231, 975
BisI GCNGC 5 cut(s) 164, 596, 632, 882, 1031
BlsI GCNGC 5 cut(s) 165, 597, 633, 883, 1032
Bme1390I CCNGG 5 cut(s) 63, 415, 542, 1003, 1331
BmeT110I CYCGRG 1 cut(s) 708
BmgT120I GGNCC 2 cut(s) 122, 704
BmiI GGNNCC 3 cut(s) 412, 474, 1180
BmrFI CCNGG 5 cut(s) 63, 415, 542, 1003, 1331
BmrI ACTGGG 2 cut(s) 506, 692
BmsI GCATC 3 cut(s) 364, 424, 589
BmuI ACTGGG 2 cut(s) 506, 692
BpiI GAAGAC 1 cut(s) 780
BpuEI CTTGAG 2 cut(s) 971, 1042
BpuMI CCSGG 3 cut(s) 63, 415, 542
Bsa29I ATCGAT 4 cut(s) 114, 344, 358, 1156
BsaBI GATNNNNATC 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 4 cut(s) 61, 707, 840, 977
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 1075, 1076
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 3 cut(s) 77, 501, 687
Bse21I CCTNAGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 1003, 1331
BseCI ATCGAT 4 cut(s) 114, 344, 358, 1156
BseDI CCNNGG 4 cut(s) 61, 707, 840, 977
BseGI GGATG 2 cut(s) 744, 853
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 3 cut(s) 91, 1075, 1076
BseMII CTCAG 3 cut(s) 81, 1325, 1331
BseNI ACTGG 3 cut(s) 77, 501, 687
BseRI GAGGAG 2 cut(s) 1171, 1246
BseXI GCAGC 3 cut(s) 582, 868, 1017
Bsh1285I CGRYCG 1 cut(s) 114
BshFI GGCC 2 cut(s) 123, 706
BshVI ATCGAT 4 cut(s) 114, 344, 358, 1156
BsiEI CGRYCG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 1 cut(s) 708
BsiSI CCGG 6 cut(s) 63, 136, 404, 414, 541, 613
BslFI GGGAC 2 cut(s) 1269, 1290
BslI CCNNNNNNNGG 3 cut(s) 91, 1075, 1076
BsmAI GTCTC 1 cut(s) 1320
BsmFI GGGAC 2 cut(s) 1269, 1290
BsnI GGCC 2 cut(s) 123, 706
BsoBI CYCGRG 1 cut(s) 708
Bsp1286I GDGCHC 4 cut(s) 26, 86, 475, 1181
Bsp143I GATC 5 cut(s) 111, 115, 208, 1009, 1200
Bsp19I CCATGG 1 cut(s) 840
BspACI CCGC 8 cut(s) 7, 95, 164, 308, 533, 554, 588, 631
BspANI GGCC 2 cut(s) 123, 706
BspCNI CTCAG 3 cut(s) 82, 1324, 1330
BspDI ATCGAT 4 cut(s) 114, 344, 358, 1156
BspLI GGNNCC 3 cut(s) 412, 474, 1180
BspMI ACCTGC 2 cut(s) 210, 1276
BspPI GGATC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 3 cut(s) 77, 501, 687
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 4 cut(s) 61, 707, 840, 977
BssMI GATC 5 cut(s) 111, 115, 208, 1009, 1200
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 840, 977
Bst2UI CCWGG 2 cut(s) 1003, 1331
Bst4CI ACNGT 6 cut(s) 263, 410, 428, 1126, 1270, 1281
Bst6I CTCTTC 2 cut(s) 662, 1223
BstACI GRCGYC 1 cut(s) 376
BstAPI GCANNNNNTGC 1 cut(s) 172
BstC8I GCNNGC 4 cut(s) 137, 168, 420, 1028
BstDEI CTNAG 3 cut(s) 90, 1311, 1317
BstDSI CCRYGG 1 cut(s) 840
BstEII GGTNACC 1 cut(s) 1325
BstF5I GGATG 2 cut(s) 744, 853
BstH2I RGCGCY 2 cut(s) 248, 504
BstHHI GCGC 3 cut(s) 177, 247, 503
BstKTI GATC 5 cut(s) 114, 118, 211, 1012, 1203
BstMAI GTCTC 1 cut(s) 1320
BstMBI GATC 5 cut(s) 111, 115, 208, 1009, 1200
BstMCI CGRYCG 1 cut(s) 114
BstMWI GCNNNNNNNGC 3 cut(s) 172, 890, 1036
BstNI CCWGG 2 cut(s) 1003, 1331
BstNSI RCATGY 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 1325
BstSCI CCNGG 5 cut(s) 61, 413, 540, 1001, 1329
BstV1I GCAGC 3 cut(s) 582, 868, 1017
BstV2I GAAGAC 1 cut(s) 780
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Bsu15I ATCGAT 4 cut(s) 114, 344, 358, 1156
Bsu36I CCTNAGG 1 cut(s) 90
BsuI GTATCC 2 cut(s) 231, 975
BsuRI GGCC 2 cut(s) 123, 706
BsuTUI ATCGAT 4 cut(s) 114, 344, 358, 1156
BtgI CCRYGG 1 cut(s) 840
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 744, 853
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 4 cut(s) 84, 300, 433, 641
BveI ACCTGC 2 cut(s) 210, 1276
Cac8I GCNNGC 4 cut(s) 137, 168, 420, 1028
CfoI GCGC 3 cut(s) 177, 247, 503
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 2 cut(s) 122, 704
ClaI ATCGAT 4 cut(s) 114, 344, 358, 1156
CseI GACGC 2 cut(s) 365, 658
Csp6I GTAC 2 cut(s) 264, 837
CviAII CATG 7 cut(s) 132, 167, 182, 319, 391, 584, 841
CviQI GTAC 2 cut(s) 264, 837
DdeI CTNAG 3 cut(s) 90, 1311, 1317
DpnI GATC 5 cut(s) 113, 117, 210, 1011, 1202
DpnII GATC 5 cut(s) 111, 115, 208, 1009, 1200
Eam1104I CTCTTC 2 cut(s) 662, 1223
EarI CTCTTC 2 cut(s) 662, 1223
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 2 cut(s) 840, 977
Eco24I GRGCYC 4 cut(s) 26, 86, 475, 1181
Eco53kI GAGCTC 1 cut(s) 24
Eco81I CCTNAGG 1 cut(s) 90
Eco88I CYCGRG 1 cut(s) 708
Eco91I GGTNACC 1 cut(s) 1325
EcoICRI GAGCTC 1 cut(s) 24
EcoO65I GGTNACC 1 cut(s) 1325
EcoRI GAATTC 2 cut(s) 812, 1064
EcoRII CCWGG 2 cut(s) 1001, 1329
EcoT14I CCWWGG 2 cut(s) 840, 977
EcoT38I GRGCYC 4 cut(s) 26, 86, 475, 1181
ErhI CCWWGG 2 cut(s) 840, 977
FaeI CATG 7 cut(s) 135, 170, 185, 322, 394, 587, 844
FalI AAGNNNNNCTT 2 cut(s) 1284, 1316
FaqI GGGAC 2 cut(s) 1269, 1290
FatI CATG 7 cut(s) 131, 166, 181, 318, 390, 583, 840
FauI CCCGC 2 cut(s) 547, 581
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 5 cut(s) 164, 596, 632, 882, 1031
FokI GGATG 2 cut(s) 751, 860
FriOI GRGCYC 4 cut(s) 26, 86, 475, 1181
Fsp4HI GCNGC 5 cut(s) 164, 596, 632, 882, 1031
FspBI CTAG 3 cut(s) 234, 599, 1188
GlaI GCGC 3 cut(s) 176, 246, 502
GluI GCNGC 5 cut(s) 164, 596, 632, 882, 1031
HaeII RGCGCY 2 cut(s) 248, 504
HaeIII GGCC 2 cut(s) 123, 706
HapII CCGG 6 cut(s) 63, 136, 404, 414, 541, 613
HgaI GACGC 2 cut(s) 365, 658
HhaI GCGC 3 cut(s) 177, 247, 503
Hin1I GRCGYC 1 cut(s) 376
Hin1II CATG 7 cut(s) 135, 170, 185, 322, 394, 587, 844
Hin6I GCGC 3 cut(s) 175, 245, 501
HinP1I GCGC 3 cut(s) 175, 245, 501
HincII GTYRAC 2 cut(s) 226, 855
HindII GTYRAC 2 cut(s) 226, 855
HinfI GANTC 3 cut(s) 230, 448, 1133
HpaII CCGG 6 cut(s) 63, 136, 404, 414, 541, 613
HphI GGTGA 7 cut(s) 66, 376, 406, 443, 547, 724, 1091
Hpy166II GTNNAC 7 cut(s) 74, 226, 266, 538, 549, 715, 855
Hpy188I TCNGA 9 cut(s) 28, 111, 477, 494, 1138, 1167, 1205, 1266, 1320
Hpy188III TCNNGA 6 cut(s) 197, 300, 445, 988, 1015, 1198
Hpy8I GTNNAC 7 cut(s) 74, 226, 266, 538, 549, 715, 855
Hpy99I CGWCG 7 cut(s) 32, 224, 227, 230, 381, 621, 652
HpyAV CCTTC 3 cut(s) 634, 827, 1237
HpyCH4III ACNGT 6 cut(s) 263, 410, 428, 1126, 1270, 1281
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 890, 1036
HpyF3I CTNAG 3 cut(s) 90, 1311, 1317
Hsp92I GRCGYC 1 cut(s) 376
Hsp92II CATG 7 cut(s) 135, 170, 185, 322, 394, 587, 844
HspAI GCGC 3 cut(s) 175, 245, 501
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
Kzo9I GATC 5 cut(s) 111, 115, 208, 1009, 1200
LmnI GCTCC 5 cut(s) 21, 29, 478, 577, 1184
Lsp1109I GCAGC 3 cut(s) 582, 868, 1017
LweI GCATC 3 cut(s) 364, 424, 589
MaeI CTAG 3 cut(s) 234, 599, 1188
MaeIII GTNAC 4 cut(s) 874, 1079, 1120, 1325
MalI GATC 5 cut(s) 113, 117, 210, 1011, 1202
MboI GATC 5 cut(s) 111, 115, 208, 1009, 1200
MboII GAAGA 6 cut(s) 676, 679, 785, 816, 822, 1240
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 4 cut(s) 26, 86, 475, 1181
MluCI AATT 4 cut(s) 335, 812, 1064, 1116
MlyI GAGTC 2 cut(s) 239, 1127
MmeI TCCRAC 4 cut(s) 51, 472, 500, 779
MroNI GCCGGC 1 cut(s) 135
MroXI GAANNNNTTC 2 cut(s) 329, 816
MseI TTAA 3 cut(s) 926, 1101, 1115
MslI CAYNNNNRTG 4 cut(s) 130, 158, 389, 395
MspA1I CMGCKG 1 cut(s) 881
MspI CCGG 6 cut(s) 63, 136, 404, 414, 541, 613
MspR9I CCNGG 5 cut(s) 63, 415, 542, 1003, 1331
MvaI CCWGG 2 cut(s) 1003, 1331
MwoI GCNNNNNNNGC 3 cut(s) 172, 890, 1036
NaeI GCCGGC 1 cut(s) 137
NciI CCSGG 3 cut(s) 63, 415, 542
NcoI CCATGG 1 cut(s) 840
NdeII GATC 5 cut(s) 111, 115, 208, 1009, 1200
NgoMIV GCCGGC 1 cut(s) 135
NlaIII CATG 7 cut(s) 135, 170, 185, 322, 394, 587, 844
NlaIV GGNNCC 3 cut(s) 412, 474, 1180
NmuCI GTSAC 3 cut(s) 874, 1079, 1120
NspI RCATGY 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 158
PaeI GCATGC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 137
PdmI GAANNNNTTC 2 cut(s) 329, 816
PfeI GAWTC 1 cut(s) 448
PkrI GCNGC 5 cut(s) 165, 597, 633, 883, 1032
Ple19I CGATCG 1 cut(s) 114
PleI GAGTC 2 cut(s) 238, 1127
PpsI GAGTC 2 cut(s) 238, 1127
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 2 cut(s) 1001, 1329
PspEI GGTNACC 1 cut(s) 1325
PspGI CCWGG 2 cut(s) 1001, 1329
PspN4I GGNNCC 3 cut(s) 412, 474, 1180
PspPI GGNCC 2 cut(s) 122, 704
PsuI RGATCY 1 cut(s) 208
PvuI CGATCG 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 2 cut(s) 265, 838
RsaNI GTAC 2 cut(s) 264, 837
RseI CAYNNNNRTG 4 cut(s) 130, 158, 389, 395
SacI GAGCTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 3 cut(s) 926, 1101, 1115
SatI GCNGC 5 cut(s) 164, 596, 632, 882, 1031
Sau3AI GATC 5 cut(s) 111, 115, 208, 1009, 1200
Sau96I GGNCC 2 cut(s) 122, 704
SchI GAGTC 2 cut(s) 239, 1127
ScrFI CCNGG 5 cut(s) 63, 415, 542, 1003, 1331
SduI GDGCHC 4 cut(s) 26, 86, 475, 1181
SfaNI GCATC 3 cut(s) 364, 424, 589
SgrDI CGTCGACG 1 cut(s) 224
SmiMI CAYNNNNRTG 4 cut(s) 130, 158, 389, 395
SmlI CTYRAG 2 cut(s) 986, 1021
SmoI CTYRAG 2 cut(s) 986, 1021
SphI GCATGC 1 cut(s) 170
Sse9I AATT 4 cut(s) 335, 812, 1064, 1116
SsiI CCGC 8 cut(s) 7, 95, 164, 308, 533, 554, 588, 631
SspMI CTAG 3 cut(s) 234, 599, 1188
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 5 cut(s) 61, 413, 540, 1001, 1329
StyI CCWWGG 2 cut(s) 840, 977
TaaI ACNGT 6 cut(s) 263, 410, 428, 1126, 1270, 1281
TaqI TCGA 7 cut(s) 114, 225, 255, 344, 358, 794, 1156
TasI AATT 4 cut(s) 335, 812, 1064, 1116
TauI GCSGC 2 cut(s) 166, 634
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 3 cut(s) 926, 1101, 1115
Tru9I TTAA 3 cut(s) 926, 1101, 1115
TscAI CASTG 4 cut(s) 84, 300, 433, 641
TseFI GTSAC 3 cut(s) 874, 1079, 1120
TseI GCWGC 3 cut(s) 595, 881, 1030
Tsp45I GTSAC 3 cut(s) 874, 1079, 1120
TspDTI ATGAA 5 cut(s) 330, 816, 825, 944, 1286
TspGWI ACGGA 2 cut(s) 501, 634
TspRI CASTG 4 cut(s) 84, 300, 433, 641
XapI RAATTY 3 cut(s) 335, 812, 1064
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 2 cut(s) 329, 816
XspI CTAG 3 cut(s) 234, 599, 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.