Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

29042582 .. 29042908

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG268500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATTATACAATCTATTCATTGGAAATATTTACGTTGGGGGATCATGGTATACTGTAGAACCATACCAAGCAAACACAAAAGAGTCAGAAGGTTCGATACGGATTCGCACAAGCTTTACAGGATTCAGAGACTATTTGAAGAAGCAAGAGCTGGAGAAGCGCTTAAGTATCATGTTTCTACAAGACCGAAGCACTCCAGCTCGTTCGATCCATGGGTCTTCAAAAAGATGTTGGGTCACACTGATAAGATACTGAGGTTGTCTCTGCAGAAGCCATGGGTGGATAAGGATGTGCTCCCATACATGTCTCAATTATCCAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

13.09

Weight (kDa)

10.15

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	50, 203
AfeI	AGCGCT	1 cut(s)	162
AflII	CTTAAG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	140, 223
AluBI	AGCT	3 cut(s)	115, 152, 201
AluI	AGCT	3 cut(s)	115, 152, 201
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	3 cut(s)	124, 267, 312
AlwI	GGATC	2 cut(s)	50, 203
Aor51HI	AGCGCT	1 cut(s)	162
AspLEI	GCGC	1 cut(s)	163
BaeI	ACNNNNGTAYC	2 cut(s)	242, 275
BarI	GAAGNNNNNNTAC	2 cut(s)	82, 114
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	297
BcoDI	GTCTC	3 cut(s)	124, 267, 312
BfaI	CTAG	1 cut(s)	325
BfmI	CTRYAG	2 cut(s)	55, 266
BfoI	RGCGCY	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	164
BpiI	GAAGAC	1 cut(s)	211
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpmI	CTGGAG	2 cut(s)	174, 181
BsaJI	CCNNGG	3 cut(s)	212, 275, 318
BseDI	CCNNGG	3 cut(s)	212, 275, 318
BseGI	GGATG	1 cut(s)	295
BseMII	CTCAG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	297
BsmAI	GTCTC	3 cut(s)	124, 267, 312
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	42, 208
Bsp19I	CCATGG	2 cut(s)	212, 275
BspCNI	CTCAG	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	270
BspPI	GGATC	2 cut(s)	50, 203
BspTI	CTTAAG	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	212, 275, 318
BssMI	GATC	2 cut(s)	42, 208
BssNAI	GTATAC	1 cut(s)	52
BssT1I	CCWWGG	3 cut(s)	212, 275, 318
Bst1107I	GTATAC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	56
BstAFI	CTTAAG	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	2 cut(s)	212, 275
BstF5I	GGATG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	2 cut(s)	45, 211
BstMAI	GTCTC	3 cut(s)	124, 267, 312
BstMBI	GATC	2 cut(s)	42, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNSI	RCATGY	1 cut(s)	307
BstSFI	CTRYAG	2 cut(s)	55, 266
BstV2I	GAAGAC	1 cut(s)	211
BstZ17I	GTATAC	1 cut(s)	52
BtgI	CCRYGG	2 cut(s)	212, 275
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	240
CfoI	GCGC	1 cut(s)	163
CviAII	CATG	5 cut(s)	46, 173, 213, 276, 304
CviJI	RGCY	4 cut(s)	115, 152, 201, 274
CviKI_1	RGCY	4 cut(s)	115, 152, 201, 274
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	2 cut(s)	44, 210
DpnII	GATC	2 cut(s)	42, 208
Eco130I	CCWWGG	3 cut(s)	212, 275, 318
Eco47III	AGCGCT	1 cut(s)	162
EcoT14I	CCWWGG	3 cut(s)	212, 275, 318
ErhI	CCWWGG	3 cut(s)	212, 275, 318
FaeI	CATG	5 cut(s)	49, 176, 216, 279, 307
FaiI	YATR	9 cut(s)	8, 47, 52, 65, 174, 214, 277, 301, 305
FatI	CATG	5 cut(s)	45, 172, 212, 275, 303
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	1 cut(s)	302
FspBI	CTAG	1 cut(s)	325
GlaI	GCGC	1 cut(s)	162
GsuI	CTGGAG	2 cut(s)	174, 181
HaeII	RGCGCY	1 cut(s)	164
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	5 cut(s)	49, 176, 216, 279, 307
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	3 cut(s)	84, 104, 124
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	89, 129
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	5 cut(s)	49, 176, 216, 279, 307
HspAI	GCGC	1 cut(s)	161
Kzo9I	GATC	2 cut(s)	42, 208
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	3 cut(s)	106, 138, 211
MaeI	CTAG	1 cut(s)	325
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	44, 210
MboI	GATC	2 cut(s)	42, 208
MboII	GAAGA	2 cut(s)	152, 211
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	93
MnlI	CCTC	1 cut(s)	249
MseI	TTAA	1 cut(s)	165
MspCI	CTTAAG	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	158
NcoI	CCATGG	2 cut(s)	212, 275
NdeII	GATC	2 cut(s)	42, 208
NlaIII	CATG	5 cut(s)	49, 176, 216, 279, 307
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	307
PciI	ACATGT	1 cut(s)	303
PfeI	GAWTC	2 cut(s)	104, 124
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	303
PstI	CTGCAG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	42, 208
SchI	GAGTC	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	6 cut(s)	37, 95, 117, 154, 203, 260
SfcI	CTRYAG	2 cut(s)	55, 266
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	311
SspI	AATATT	1 cut(s)	29
SspMI	CTAG	1 cut(s)	325
StyI	CCWWGG	3 cut(s)	212, 275, 318
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	96, 207
TaqII	GACCGA	1 cut(s)	202
TasI	AATT	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	104, 124
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	236
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	247
Vha464I	CTTAAG	1 cut(s)	164
XceI	RCATGY	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.