Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

67260608 .. 67261365

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035470

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCTGAAACACTCCTGTTTCCATCTCTGTTTGCTTCAACAAGGGAAGAGCAACGCCTTCCCTGTGCACTCAACCAAGCTGAACACAGAGGTCTTGATCTAGGGCTAAGTCTGGGCTCCATTGACTACGACCCGTGGATCATCAAGAAGAAGTTGACGATCAGCGACCTCGGAGAATTGAGCAGGCTTTTGGTGCCCAAGAGTTTAACCCAGAAACATGTTTTGCGATTCATGAACAAGAGCTTGAACGAAAGGGTCCACAGTAGCAATGGGGAACTTGTCACCGTTTACGACTGTGACATGAAATCGAAGCATGAGTTGGTCTTCAAATACTGGCGGTCGTCAAAGAGTTACGTTTTGCAAGCAAACTGGAAGAAGGAGTTTGTGAATGTGAGGAAATTGAAGGAAGGTTTTGCAATGGCTTGTAATATATTCTGGTACGGTTATGCATCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

153

Amino Acids

17.61

Weight (kDa)

9.26

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	146
AfaI	GTAC	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	39, 247, 328, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	2 cut(s)	80, 243
AluI	AGCT	2 cut(s)	80, 243
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	146
ApaLI	GTGCAC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	70, 198
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	31
BfaI	CTAG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	118, 195, 257
BpiI	GAAGAC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	134, 169
Bse1I	ACTGG	2 cut(s)	338, 374
Bse3DI	GCAATG	2 cut(s)	274, 423
BseDI	CCNNGG	2 cut(s)	134, 169
BseMI	GCAATG	2 cut(s)	274, 423
BseNI	ACTGG	2 cut(s)	338, 374
BseSI	GKGCMC	2 cut(s)	70, 198
Bsh1285I	CGRYCG	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	70
Bsp1286I	GDGCHC	3 cut(s)	70, 119, 198
Bsp143I	GATC	3 cut(s)	97, 138, 159
BspACI	CCGC	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	118, 195, 257
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	193
BsrDI	GCAATG	2 cut(s)	274, 423
BsrI	ACTGG	2 cut(s)	338, 374
BssECI	CCNNGG	2 cut(s)	134, 169
BssMI	GATC	3 cut(s)	97, 138, 159
Bst4CI	ACNGT	4 cut(s)	263, 286, 296, 443
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	185, 363
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	134
BstKTI	GATC	3 cut(s)	100, 141, 162
BstMBI	GATC	3 cut(s)	97, 138, 159
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	221
BstSLI	GKGCMC	2 cut(s)	70, 198
BstV2I	GAAGAC	1 cut(s)	316
BtgI	CCRYGG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	185, 363
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	4 cut(s)	218, 232, 301, 314
CviJI	RGCY	7 cut(s)	5, 80, 106, 117, 187, 243, 422
CviKI_1	RGCY	7 cut(s)	5, 80, 106, 117, 187, 243, 422
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	3 cut(s)	99, 140, 161
DpnII	GATC	3 cut(s)	97, 138, 159
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	256
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	4 cut(s)	221, 235, 304, 317
FaiI	YATR	7 cut(s)	219, 233, 302, 315, 431, 447, 457
FatI	CATG	4 cut(s)	217, 231, 300, 313
FriOI	GRGCYC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	101
Hin1II	CATG	4 cut(s)	221, 235, 304, 317
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	228
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	4 cut(s)	68, 156, 259, 289
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	3 cut(s)	95, 145, 232
Hpy8I	GTNNAC	4 cut(s)	68, 156, 259, 289
HpyAV	CCTTC	4 cut(s)	68, 370, 397, 401
HpyCH4III	ACNGT	4 cut(s)	263, 286, 296, 443
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	4 cut(s)	68, 361, 416, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	221, 235, 304, 317
Kzo9I	GATC	3 cut(s)	97, 138, 159
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	29, 76, 98, 169, 224, 319, 355, 421
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	280, 296, 350
MalI	GATC	3 cut(s)	99, 140, 161
MboI	GATC	3 cut(s)	97, 138, 159
MboII	GAAGA	4 cut(s)	59, 160, 316, 385
MhlI	GDGCHC	3 cut(s)	70, 119, 198
MluCI	AATT	2 cut(s)	176, 398
MnlI	CCTC	3 cut(s)	83, 179, 387
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	3 cut(s)	97, 138, 159
NlaIII	CATG	4 cut(s)	221, 235, 304, 317
NlaIV	GGNNCC	3 cut(s)	118, 195, 257
NmuCI	GTSAC	2 cut(s)	280, 296
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	231
PciI	ACATGT	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	118, 195, 257
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	206
Sau3AI	GATC	3 cut(s)	97, 138, 159
Sau96I	GGNCC	1 cut(s)	256
SduI	GDGCHC	3 cut(s)	70, 119, 198
SetI	ASST	6 cut(s)	82, 94, 171, 245, 357, 412
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	2 cut(s)	176, 398
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	263, 286, 296, 443
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	308
TasI	AATT	2 cut(s)	176, 398
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TseFI	GTSAC	2 cut(s)	280, 296
Tsp45I	GTSAC	2 cut(s)	280, 296
TspDTI	ATGAA	3 cut(s)	220, 248, 317
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	101
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.