Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002072

Physical Location & Seq

Genomic Coordinates Reverse (-)

67113463 .. 67114383

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG414100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTGAAACACTCCTGTTTCCATCTCTGTTTGCTTCAACAAGGGAAGAGCAACACCTACCCTGTGCACTCAACCAAGCTGAACACAGAGGTCTTGATCTAGGGCTAAGTCTGGGCTCCATTGACTACGACCCGTGGATCATCAAGAAGAAGTTGACGGTCAGCGACCTCGGAGAATTGAGCAGGCTTTTGGTGCCCAAGAGTTTAACCCAGAAACATGTTTTGCGATTCATGAACAAGAGCTTGAACGAAAGGGTCCACAGTAGCAATGGGGAACTTGTCACCGTTTACGACTGTGACATGAAATCGAAGCATGAGTTGGTCTTCAAATACTGGCCGTCGTCAAAGAGTTACGTTCTGCAAGCAAACTGGAAGAAGGAGTTTGTGAATGTGAGGAAATTGAAGGAAGGTGATCAAATTGGGCTTTATTGGGATGCTCGGCGTTCCATTTTCGTATTTTCTCTTCTTAAACGAGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

160

Amino Acids

18.53

Weight (kDa)

9.21

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	50 - 157	5.5e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78635 AT1G78640 AT2G33720
fragaria_vesca	FvH4_3g33791 FvH4_3g37630
malus_domestica	MD14G1106900.v1.1
prunus_persica	Prupe.5G092200_v2.0.a1 Prupe.5G102200_v2.0.a1 Prupe.5G102300_v2.0.a1 Prupe.5G102400_v2.0.a1 Prupe.5G102500_v2.0.a1
pyrus_communis	pycom05g30850 pycom05g30870 pycom14g10060
rosa_chinensis	RchiOBHm_Chr2g0116441
rosa_laevigata	RLG00000003924 RLG00000018270 RLG00000035460 RLG00000035470
rosa_multiflora	Rmu_sc0000338.1_g000013 Rmu_sc0000689.1_g000016 Rmu_sc0001164.1_g000007 Rmu_sc0004191.1_g000056 Rmu_sc0019528.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019310 Rroxscaffold_1G00019370 Rroxscaffold_5G00379640
rosa_rugosa	Rorug05G0141100 Rorug05G0339700
rosa_samantha	Rh2AG262200 Rh2CG268400 Rh2CG268500 Rh2DG270400 Rh5AG402000 Rh5BG019500 Rh5BG414100 Rh5CG438600 Rh5DG428700 Rh7AG166100 Rh7BG168200 Rh7CG174500 Rh7DG167800
rosa_wichuraiana	Rw5G037840 Rw7G014460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	39, 247, 328, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	2 cut(s)	80, 243
AluI	AGCT	2 cut(s)	80, 243
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	335
ApaLI	GTGCAC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	2 cut(s)	274, 422
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	70, 198
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	447, 479
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	412
BfaI	CTAG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	3 cut(s)	118, 195, 257
BmsI	GCATC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	134, 169
Bse1I	ACTGG	2 cut(s)	338, 374
Bse3DI	GCAATG	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	134, 169
BseGI	GGATG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	274
BseNI	ACTGG	2 cut(s)	338, 374
BseSI	GKGCMC	2 cut(s)	70, 198
BshFI	GGCC	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	337
Bsp1286I	GDGCHC	3 cut(s)	70, 119, 198
Bsp143I	GATC	3 cut(s)	97, 138, 412
BspANI	GGCC	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	118, 195, 257
BspPI	GGATC	1 cut(s)	146
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	274
BsrI	ACTGG	2 cut(s)	338, 374
BssECI	CCNNGG	2 cut(s)	134, 169
BssMI	GATC	3 cut(s)	97, 138, 412
Bst4CI	ACNGT	4 cut(s)	160, 263, 286, 296
Bst6I	CTCTTC	2 cut(s)	42, 468
BstC8I	GCNNGC	2 cut(s)	185, 363
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	3 cut(s)	100, 141, 415
BstMBI	GATC	3 cut(s)	97, 138, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	221
BstSLI	GKGCMC	2 cut(s)	70, 198
BstV2I	GAAGAC	1 cut(s)	316
BsuRI	GGCC	1 cut(s)	337
BtgI	CCRYGG	1 cut(s)	134
BtsCI	GGATG	1 cut(s)	439
Cac8I	GCNNGC	2 cut(s)	185, 363
CciI	TCATGA	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	4 cut(s)	218, 232, 301, 314
CviJI	RGCY	8 cut(s)	5, 80, 106, 117, 187, 243, 337, 424
CviKI_1	RGCY	8 cut(s)	5, 80, 106, 117, 187, 243, 337, 424
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	3 cut(s)	99, 140, 414
DpnII	GATC	3 cut(s)	97, 138, 412
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	2 cut(s)	42, 468
EarI	CTCTTC	2 cut(s)	42, 468
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	4 cut(s)	221, 235, 304, 317
FaiI	YATR	4 cut(s)	219, 233, 302, 315
FatI	CATG	4 cut(s)	217, 231, 300, 313
FbaI	TGATCA	1 cut(s)	412
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	119
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	337
Hin1II	CATG	4 cut(s)	221, 235, 304, 317
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	228
HphI	GGTGA	2 cut(s)	274, 422
Hpy166II	GTNNAC	4 cut(s)	68, 156, 259, 289
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	3 cut(s)	95, 145, 232
Hpy8I	GTNNAC	4 cut(s)	68, 156, 259, 289
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	3 cut(s)	370, 397, 401
HpyCH4III	ACNGT	4 cut(s)	160, 263, 286, 296
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	68, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	4 cut(s)	221, 235, 304, 317
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	97, 138, 412
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	7 cut(s)	29, 76, 98, 169, 224, 319, 355
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	3 cut(s)	280, 296, 350
MalI	GATC	3 cut(s)	99, 140, 414
MboI	GATC	3 cut(s)	97, 138, 412
MboII	GAAGA	5 cut(s)	59, 160, 316, 385, 455
MhlI	GDGCHC	3 cut(s)	70, 119, 198
MluCI	AATT	3 cut(s)	176, 398, 417
MnlI	CCTC	3 cut(s)	83, 179, 387
MseI	TTAA	2 cut(s)	206, 468
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	3 cut(s)	97, 138, 412
NlaIII	CATG	4 cut(s)	221, 235, 304, 317
NlaIV	GGNNCC	3 cut(s)	118, 195, 257
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	280, 296
NspI	RCATGY	1 cut(s)	221
PagI	TCATGA	1 cut(s)	231
PciI	ACATGT	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	217
PspN4I	GGNNCC	3 cut(s)	118, 195, 257
PspPI	GGNCC	1 cut(s)	256
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	206, 468
Sau3AI	GATC	3 cut(s)	97, 138, 412
Sau96I	GGNCC	1 cut(s)	256
SduI	GDGCHC	3 cut(s)	70, 119, 198
SetI	ASST	7 cut(s)	60, 82, 94, 171, 245, 357, 412
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	3 cut(s)	176, 398, 417
SspMI	CTAG	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	160, 263, 286, 296
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	308
TasI	AATT	3 cut(s)	176, 398, 417
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	206, 468
Tru9I	TTAA	2 cut(s)	206, 468
TseFI	GTSAC	2 cut(s)	280, 296
Tsp45I	GTSAC	2 cut(s)	280, 296
TspDTI	ATGAA	3 cut(s)	220, 248, 317
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	221
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.